Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0009849

Physical Location & Seq

Genomic Coordinates Reverse (-)

6499279 .. 6504130

Gene Structure 4852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g08370.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGGTAGCCCAAAGAAGGATCAGAACAAGGGCTTCTTCGCAGCCATGAGTTCCGGCCTCTCCATGTTTGGCAACGCCATGCACCGATCCGTCGGCGGGTTGCTTGGTTATGAAGGGGTGGAAGTCATAAATCCAGAGGGAGGCAAAGAAGATGCAGAGGAGGAAGCTCAAAGAGGAAGATGGAAGCAGGAGGAACGAGACAGTTACTGGAGGATGATGCAGAAGTATATAGGTTCAGATGTAACATCAATGGTGACTCTTCCTGTACTTATCTTTGAGCCAATGACAATGCTGCAGAAAATGGCTGAGTTAATGGAGTATTCACACTTGTTGGATTGCGCCGATGAATGTGAGGATCCTTATATGCAGTTGGTGTTTGCCACATCATGGGCGATATCGGTCTACTATGCCTACCAGCGGACGTGGAAGCCATTCAATCCTATCCTTGGGGAGACTTATGAAATGGTTAATCACTCAGGGGTTACATTTATTGCAGAGCAGGTGAGTCATCATCCACCAATGAGTGCTGGGCATGCAGAAAATGATCATTTCACTTATGATGTGACATCAAAACTGAAGACTAAATTTTTAGGGAACTCTGTTGATGTTTACCCTGTTGGAAGAACACGTGTGACTCTTAAAAGAAATGGTGTAGTCTTAGATTTAGTGCCACCTCCCACAAAGGTGAACAACTTGATATTTGGCCGGACATGGGTTGATTCACCAGGAGAGATGATTATGACCAATCTGACGACTGGGGACAAAGTTGTGCTATATTTTCAGCCATGTGGCTGGTTTGGAGCTGGCCGCTATGAAGTGGATGGATATGTTTATAATGCTGCTGAGGAACCTCAGACACTGATGACTGGGAAATGGAATGAGTCAATGAGTTATCAACCATGTGATTTGGAAGGGGAACCCCTTCCAGGCACAGAATTGAAAGAGGTTTGGCACGTTGCTGATGTTCCAAAGAACGACAAATTTCAGTACACATATTTTGCGCATAAACTAAATAGCTTTGACACCGCTCCTAAAAAGTTTTTGGCATCAGACTCTCGTTTGCGCCCGGATAGATATGCACTTGAGAAGGGTGATCTATCCAAATCTGGTGCAGAAAAAAGCAGATTGGAGGAGAGGCAGAGAGCTGAAAAGAAAGAACGAGAGGCCAAGCATCATCAGTTTACACCAAGATGGTTTGACTTGACTGAGGAAGTTACACCTACACCTTGGGGTGACTTGGAAGTCTATCAATATAACAATAAATACACTGAACACCAAGCCGCAATTGATAGCTCTGACTCAATTGATGTGGTTGATGTTACATCAATTGAATTCAACCCATGGCAGTTTGGTAACCTGTCTGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

457

Amino Acids

52.04

Weight (kDa)

5.12

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59420
fragaria_vesca	FvH4_3g36500 FvH4_3g36500
malus_domestica	MD03G1090000.v1.1 MD11G1099300.v1.1
prunus_persica	Prupe.6G074200_v2.0.a1 Prupe.6G074200_v2.0.a1
pyrus_communis	pycom03g07160 pycom11g08370
rosa_chinensis	RchiOBHm_Chr5g0065361 RchiOBHm_Chr5g0065411
rosa_laevigata	RLG00000035786
rosa_multiflora	Rmu_sc0009942.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015830
rosa_rugosa	Rorug05G0371500 Rorug05G0371500 Rorug05G0371600
rosa_samantha	Rh5BG444700 Rh5CG467000 Rh5DG457000
rosa_wichuraiana	Rw5G040310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	834
AarI	CACCTGC	1 cut(s)	490
AasI	GACNNNNNNGTC	1 cut(s)	1241
Acc16I	TGCGCA	1 cut(s)	1002
Acc36I	ACCTGC	1 cut(s)	490
AccB7I	CCANNNNNTGG	1 cut(s)	387
AccBSI	CCGCTC	1 cut(s)	1028
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	5 cut(s)	96, 418, 808, 1026, 1281
AclWI	GGATC	4 cut(s)	27, 81, 350, 363
AcoI	YGGCCR	2 cut(s)	703, 805
AcsI	RAATTY	3 cut(s)	584, 980, 1331
AcuI	CTGAAG	1 cut(s)	596
AcvI	CACGTG	1 cut(s)	629
AfaI	GTAC	2 cut(s)	267, 989
AfiI	CCNNNNNNNGG	8 cut(s)	16, 96, 140, 387, 417, 446, 712, 926
AflIII	ACRYGT	2 cut(s)	626, 628
AgsI	TTSAA	4 cut(s)	436, 940, 1331, 1336
AjiI	CACGTC	1 cut(s)	423
AjnI	CCWGG	2 cut(s)	724, 925
AleI	CACNNNNGTG	1 cut(s)	683
AluBI	AGCT	5 cut(s)	167, 803, 1017, 1145, 1293
AluI	AGCT	5 cut(s)	167, 803, 1017, 1145, 1293
Alw26I	GTCTC	2 cut(s)	192, 446
AlwI	GGATC	4 cut(s)	27, 81, 350, 363
AlwNI	CAGNNNCTG	2 cut(s)	207, 859
AoxI	GGCC	4 cut(s)	55, 703, 805, 1164
ApeKI	GCWGC	3 cut(s)	41, 292, 839
ApoI	RAATTY	3 cut(s)	584, 980, 1331
Asp700I	GAANNNNTTC	2 cut(s)	431, 921
AspLEI	GCGC	3 cut(s)	341, 1003, 1065
AsuC2I	CCSGG	1 cut(s)	1067
AsuHPI	GGTGA	6 cut(s)	265, 514, 697, 714, 1103, 1244
BamHI	GGATCC	1 cut(s)	355
BbrPI	CACGTG	1 cut(s)	629
BbsI	GAAGAC	1 cut(s)	584
BbvCI	CCTCAGC	1 cut(s)	843
BbvI	GCAGC	3 cut(s)	53, 279, 826
BccI	CCATC	3 cut(s)	174, 815, 1185
BciT130I	CCWGG	2 cut(s)	726, 927
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	1067
BcoDI	GTCTC	2 cut(s)	192, 446
BfmI	CTRYAG	2 cut(s)	293, 1362
BfuAI	ACCTGC	1 cut(s)	490
BisI	GCNGC	5 cut(s)	42, 293, 808, 840, 1281
BlsI	GCNGC	5 cut(s)	43, 294, 809, 841, 1282
Bme1390I	CCNGG	3 cut(s)	726, 927, 1067
BmgBI	CACGTC	1 cut(s)	423
BmiI	GGNNCC	3 cut(s)	357, 849, 918
BmrFI	CCNGG	3 cut(s)	726, 927, 1067
BmrI	ACTGGG	2 cut(s)	765, 876
BmsI	GCATC	4 cut(s)	142, 207, 1055, 1180
BmuI	ACTGGG	2 cut(s)	765, 876
BpiI	GAAGAC	1 cut(s)	584
BpmI	CTGGAG	1 cut(s)	229
Bpu10I	CCTNAGC	1 cut(s)	843
BpuEI	CTTGAG	1 cut(s)	1103
BpuMI	CCSGG	1 cut(s)	1067
BsaAI	YACGTR	1 cut(s)	629
BsaJI	CCNNGG	3 cut(s)	445, 1226, 1340
Bsc4I	CCNNNNNNNGG	8 cut(s)	16, 96, 140, 387, 417, 446, 712, 926
Bse1I	ACTGG	3 cut(s)	212, 760, 871
BseBI	CCWGG	2 cut(s)	726, 927
BseDI	CCNNGG	3 cut(s)	445, 1226, 1340
BseGI	GGATG	3 cut(s)	219, 511, 826
BseLI	CCNNNNNNNGG	8 cut(s)	16, 96, 140, 387, 417, 446, 712, 926
BseMII	CTCAG	5 cut(s)	297, 489, 834, 866, 1197
BseNI	ACTGG	3 cut(s)	212, 760, 871
BseRI	GAGGAG	2 cut(s)	173, 1145
BseXI	GCAGC	3 cut(s)	53, 279, 826
BseYI	CCCAGC	1 cut(s)	527
BsgI	GTGCAG	1 cut(s)	1131
BshFI	GGCC	4 cut(s)	57, 705, 807, 1166
BsiSI	CCGG	3 cut(s)	54, 706, 1067
BslFI	GGGAC	1 cut(s)	773
BslI	CCNNNNNNNGG	8 cut(s)	16, 96, 140, 387, 417, 446, 712, 926
BsmAI	GTCTC	2 cut(s)	192, 446
BsmFI	GGGAC	1 cut(s)	773
BsnI	GGCC	4 cut(s)	57, 705, 807, 1166
Bsp143I	GATC	5 cut(s)	19, 86, 355, 544, 1093
Bsp19I	CCATGG	1 cut(s)	1340
BspACI	CCGC	5 cut(s)	96, 418, 808, 1026, 1281
BspANI	GGCC	4 cut(s)	57, 705, 807, 1166
BspCNI	CTCAG	5 cut(s)	298, 488, 835, 865, 1198
BspLI	GGNNCC	3 cut(s)	357, 849, 918
BspMAI	CTGCAG	2 cut(s)	297, 1366
BspMI	ACCTGC	1 cut(s)	490
BspPI	GGATC	4 cut(s)	27, 81, 350, 363
BsrBI	CCGCTC	1 cut(s)	1028
BsrI	ACTGG	3 cut(s)	212, 760, 871
BssECI	CCNNGG	3 cut(s)	445, 1226, 1340
BssMI	GATC	5 cut(s)	19, 86, 355, 544, 1093
BssT1I	CCWWGG	3 cut(s)	445, 1226, 1340
Bst2UI	CCWGG	2 cut(s)	726, 927
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	264
BstBAI	YACGTR	1 cut(s)	629
BstC8I	GCNNGC	2 cut(s)	534, 805
BstDEI	CTNAG	6 cut(s)	306, 475, 658, 843, 852, 1206
BstDSI	CCRYGG	1 cut(s)	1340
BstEII	GGTNACC	1 cut(s)	1352
BstF5I	GGATG	3 cut(s)	219, 511, 826
BstHHI	GCGC	3 cut(s)	341, 1003, 1065
BstKTI	GATC	5 cut(s)	22, 89, 358, 547, 1096
BstMAI	GTCTC	2 cut(s)	192, 446
BstMBI	GATC	5 cut(s)	19, 86, 355, 544, 1093
BstMWI	GCNNNNNNNGC	1 cut(s)	533
BstNI	CCWGG	2 cut(s)	726, 927
BstNSI	RCATGY	1 cut(s)	536
BstPI	GGTNACC	1 cut(s)	1352
BstSCI	CCNGG	3 cut(s)	724, 925, 1065
BstSFI	CTRYAG	2 cut(s)	293, 1362
BstV1I	GCAGC	3 cut(s)	53, 279, 826
BstV2I	GAAGAC	1 cut(s)	584
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	792
BstYI	RGATCY	1 cut(s)	355
BsuRI	GGCC	4 cut(s)	57, 705, 807, 1166
BtgI	CCRYGG	1 cut(s)	1340
BtrI	CACGTC	1 cut(s)	423
BtsCI	GGATG	3 cut(s)	219, 511, 826
BtsIMutI	CAGTG	2 cut(s)	857, 1266
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	2 cut(s)	534, 805
CaiI	CAGNNNCTG	2 cut(s)	207, 859
CfoI	GCGC	3 cut(s)	341, 1003, 1065
Csp6I	GTAC	2 cut(s)	266, 988
CspCI	CAANNNNNGTGG	2 cut(s)	1290, 1325
CviAII	CATG	9 cut(s)	46, 64, 79, 387, 533, 711, 786, 900, 1341
CviQI	GTAC	2 cut(s)	266, 988
DdeI	CTNAG	6 cut(s)	306, 475, 658, 843, 852, 1206
DpnI	GATC	5 cut(s)	21, 88, 357, 546, 1095
DpnII	GATC	5 cut(s)	19, 86, 355, 544, 1093
DrdI	GACNNNNNNGTC	1 cut(s)	1241
DseDI	GACNNNNNNGTC	1 cut(s)	1241
EaeI	YGGCCR	2 cut(s)	703, 805
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	3 cut(s)	445, 1226, 1340
Eco32I	GATATC	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	596
Eco72I	CACGTG	1 cut(s)	629
Eco91I	GGTNACC	1 cut(s)	1352
EcoO65I	GGTNACC	1 cut(s)	1352
EcoRI	GAATTC	1 cut(s)	1331
EcoRII	CCWGG	2 cut(s)	724, 925
EcoRV	GATATC	1 cut(s)	396
EcoT14I	CCWWGG	3 cut(s)	445, 1226, 1340
ErhI	CCWWGG	3 cut(s)	445, 1226, 1340
FaeI	CATG	9 cut(s)	49, 67, 82, 390, 536, 714, 789, 903, 1344
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FaqI	GGGAC	1 cut(s)	773
FatI	CATG	9 cut(s)	45, 63, 78, 386, 532, 710, 785, 899, 1340
FauI	CCCGC	1 cut(s)	89
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	5 cut(s)	42, 293, 808, 840, 1281
FokI	GGATG	3 cut(s)	226, 498, 833
Fsp4HI	GCNGC	5 cut(s)	42, 293, 808, 840, 1281
FspI	TGCGCA	1 cut(s)	1002
GlaI	GCGC	3 cut(s)	340, 1002, 1064
GluI	GCNGC	5 cut(s)	42, 293, 808, 840, 1281
GsaI	CCCAGC	1 cut(s)	531
GsuI	CTGGAG	1 cut(s)	229
HaeIII	GGCC	4 cut(s)	57, 705, 807, 1166
HapII	CCGG	3 cut(s)	54, 706, 1067
HhaI	GCGC	3 cut(s)	341, 1003, 1065
Hin1II	CATG	9 cut(s)	49, 67, 82, 390, 536, 714, 789, 903, 1344
Hin6I	GCGC	3 cut(s)	339, 1001, 1063
HinP1I	GCGC	3 cut(s)	339, 1001, 1063
HinfI	GANTC	7 cut(s)	256, 505, 634, 719, 881, 1052, 1298
HpaII	CCGG	3 cut(s)	54, 706, 1067
HphI	GGTGA	6 cut(s)	265, 514, 697, 714, 1103, 1244
Hpy166II	GTNNAC	5 cut(s)	403, 610, 688, 990, 1182
Hpy188I	TCNGA	6 cut(s)	24, 238, 750, 855, 1051, 1297
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	5 cut(s)	403, 610, 688, 990, 1182
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	5 cut(s)	10, 107, 905, 932, 1081
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	3 cut(s)	422, 628, 954
HpyF10VI	GCNNNNNNNGC	1 cut(s)	533
HpyF3I	CTNAG	6 cut(s)	306, 475, 658, 843, 852, 1206
HpySE526I	ACGT	3 cut(s)	422, 628, 954
Hsp92II	CATG	9 cut(s)	49, 67, 82, 390, 536, 714, 789, 903, 1344
HspAI	GCGC	3 cut(s)	339, 1001, 1063
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	5 cut(s)	19, 86, 355, 544, 1093
LmnI	GCTCC	2 cut(s)	800, 1033
Lsp1109I	GCAGC	3 cut(s)	53, 279, 826
LweI	GCATC	4 cut(s)	142, 207, 1055, 1180
MaeII	ACGT	3 cut(s)	422, 628, 954
MalI	GATC	5 cut(s)	21, 88, 357, 546, 1095
MbiI	CCGCTC	1 cut(s)	1028
MboI	GATC	5 cut(s)	19, 86, 355, 544, 1093
MboII	GAAGA	6 cut(s)	28, 161, 189, 251, 589, 633
MfeI	CAATTG	3 cut(s)	1284, 1302, 1326
MflI	RGATCY	1 cut(s)	355
MluCI	AATT	7 cut(s)	584, 935, 980, 1284, 1302, 1326, 1331
MlyI	GAGTC	6 cut(s)	250, 514, 628, 890, 1046, 1292
MmeI	TCCRAC	2 cut(s)	312, 598
MroXI	GAANNNNTTC	2 cut(s)	431, 921
MseI	TTAA	3 cut(s)	311, 468, 639
MslI	CAYNNNNRTG	2 cut(s)	683, 1189
MspA1I	CMGCKG	1 cut(s)	418
MspI	CCGG	3 cut(s)	54, 706, 1067
MspR9I	CCNGG	3 cut(s)	726, 927, 1067
MunI	CAATTG	3 cut(s)	1284, 1302, 1326
MvaI	CCWGG	2 cut(s)	726, 927
MwoI	GCNNNNNNNGC	1 cut(s)	533
NciI	CCSGG	1 cut(s)	1067
NcoI	CCATGG	1 cut(s)	1340
NdeII	GATC	5 cut(s)	19, 86, 355, 544, 1093
NlaIII	CATG	9 cut(s)	49, 67, 82, 390, 536, 714, 789, 903, 1344
NlaIV	GGNNCC	3 cut(s)	357, 849, 918
NmuCI	GTSAC	4 cut(s)	253, 562, 631, 1232
NsbI	TGCGCA	1 cut(s)	1002
NspI	RCATGY	1 cut(s)	536
OliI	CACNNNNGTG	1 cut(s)	683
PaeI	GCATGC	1 cut(s)	536
PaqCI	CACCTGC	1 cut(s)	490
PdmI	GAANNNNTTC	2 cut(s)	431, 921
PfeI	GAWTC	1 cut(s)	719
PflMI	CCANNNNNTGG	1 cut(s)	387
PkrI	GCNGC	5 cut(s)	43, 294, 809, 841, 1282
PleI	GAGTC	6 cut(s)	250, 513, 628, 889, 1046, 1292
PmaCI	CACGTG	1 cut(s)	629
PmlI	CACGTG	1 cut(s)	629
PpsI	GAGTC	6 cut(s)	250, 513, 628, 889, 1046, 1292
Ppu21I	YACGTR	1 cut(s)	629
PsiI	TTATAA	1 cut(s)	834
Psp6I	CCWGG	2 cut(s)	724, 925
PspCI	CACGTG	1 cut(s)	629
PspEI	GGTNACC	1 cut(s)	1352
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	2 cut(s)	724, 925
PspN4I	GGNNCC	3 cut(s)	357, 849, 918
PstI	CTGCAG	2 cut(s)	297, 1366
PstNI	CAGNNNCTG	2 cut(s)	207, 859
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	2 cut(s)	267, 989
RsaNI	GTAC	2 cut(s)	266, 988
RseI	CAYNNNNRTG	2 cut(s)	683, 1189
SaqAI	TTAA	3 cut(s)	311, 468, 639
SatI	GCNGC	5 cut(s)	42, 293, 808, 840, 1281
Sau3AI	GATC	5 cut(s)	19, 86, 355, 544, 1093
SchI	GAGTC	6 cut(s)	250, 514, 628, 890, 1046, 1292
ScrFI	CCNGG	3 cut(s)	726, 927, 1067
SfaNI	GCATC	4 cut(s)	142, 207, 1055, 1180
SfcI	CTRYAG	2 cut(s)	293, 1362
SmiMI	CAYNNNNRTG	2 cut(s)	683, 1189
SmlI	CTYRAG	1 cut(s)	1082
SmoI	CTYRAG	1 cut(s)	1082
SphI	GCATGC	1 cut(s)	536
Sse9I	AATT	7 cut(s)	584, 935, 980, 1284, 1302, 1326, 1331
SsiI	CCGC	5 cut(s)	96, 418, 808, 1026, 1281
StyD4I	CCNGG	3 cut(s)	724, 925, 1065
StyI	CCWWGG	3 cut(s)	445, 1226, 1340
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	3 cut(s)	425, 631, 957
TaqII	GACCGA	1 cut(s)	388
TasI	AATT	7 cut(s)	584, 935, 980, 1284, 1302, 1326, 1331
TatI	WGTACW	2 cut(s)	265, 987
TauI	GCSGC	2 cut(s)	810, 1283
TfiI	GAWTC	1 cut(s)	719
Tru1I	TTAA	3 cut(s)	311, 468, 639
Tru9I	TTAA	3 cut(s)	311, 468, 639
TscAI	CASTG	2 cut(s)	864, 1273
TseFI	GTSAC	4 cut(s)	253, 562, 631, 1232
TseI	GCWGC	3 cut(s)	41, 292, 839
Tsp45I	GTSAC	4 cut(s)	253, 562, 631, 1232
TspDTI	ATGAA	4 cut(s)	126, 360, 474, 828
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	2 cut(s)	864, 1273
Van91I	CCANNNNNTGG	1 cut(s)	387
XapI	RAATTY	3 cut(s)	584, 980, 1331
XceI	RCATGY	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	402
XmnI	GAANNNNTTC	2 cut(s)	431, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.