Rh5CG467000

Belongs to the OSBP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0009849
Physical Location & Seq
Forward (+)
65064332 .. 65069513
5182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG467000.1

Sequence Viewer

Length: 975 bp
ATGCTTGGTTATGAAGGGGTGGAAGTTATAAATCCAGAGGGAGGCAAAGAAGACGCAGAGGAGGAAGCTCAACGAGGAAGATGGAAACAGGAGGAACGAGACAGTTACTGGAAGATGATGCAAAAGTATATAGGTTCAGATATAACATCAATGGTGACTCTTCCTGTATATATTTTTGAGCCAATGACAATGCTGCAGAAAATGGCAGAGCTTATGGAATATTCACACTTGTTGGATCGCGCTGATGAATGTGAGGATCCTTATATGCGGTTGGTGTACACCACTTCATGGGCTATATCTGTCTACTACGCCTACCAGCGAACATGGAAACCATTTAATCCTATACTTGGGGAGACTTATGAGATGGTTAATCACTGTGGGATTACATTCGTTGCAGAGCAGGTTAGTCATCATCCACCAATGAGTGCTGCTCATGGTGAAAATGAGCATTTCACTTATGATGTGACGTCAAAGCTGAAAACTAAATTTTTAGGAAACTCTCTTGATGTTTACCCTGTTGGAAGAACCCGAGTGACTCTTAAAAGAGATGGTGTAGTCTTAGATTTAGTGCCACCTCCCACAAAGGTAAACAACTTGATATTCGGACGGACTTGGGTTGATTCACCTGGAGAGATGATCATGACAAATCTGACAACTGGGGACAAAGCTGTGCTATGTTTCCAGCCTTGTGGCTGGTTTGGAGCTGGTCGTTATGAAGTGGATGGATATGTTTATAATTCTGCTGAGGAACCTAAGATATTGATGACTGGGAAATGGAATGAATCCATGAATTATCAACCTTGTGACATGGAAGGGGAACCCCTTCCAGGAACAGAATTAAAAGAGGTACTCATAGTCTTATCTTTGTTGTATAATTTTGTCAGTCAAGTTTCATCTGCAATATGCGCAACTGTATTCTTCGAGTTAAGTTACATCTACATTATTTTTATGAAGAGCATTTTAATACTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP

Protein Analysis

324

Amino Acids

37.12

Weight (kDa)

4.84

Isoelectric Point (pI)

30.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxysterol_BP PF01237 35 - 267 2.7e-81 Oxysterol-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 29, 735
AatII GACGTC 1 cut(s) 470
Acc16I TGCGCA 1 cut(s) 907
Acc36I ACCTGC 1 cut(s) 391
AccB7I CCANNNNNTGG 1 cut(s) 288
AccI GTMKAC 1 cut(s) 303
AccII CGCG 1 cut(s) 240
AciI CCGC 1 cut(s) 268
AclWI GGATC 3 cut(s) 243, 251, 264
AcsI RAATTY 1 cut(s) 485
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 2 cut(s) 278, 849
AfiI CCNNNNNNNGG 4 cut(s) 41, 288, 347, 827
AjnI CCWGG 2 cut(s) 625, 826
AluBI AGCT 5 cut(s) 68, 211, 475, 668, 704
AluI AGCT 5 cut(s) 68, 211, 475, 668, 704
Alw26I GTCTC 2 cut(s) 93, 347
AlwI GGATC 3 cut(s) 243, 251, 264
AlwNI CAGNNNCTG 1 cut(s) 108
Ama87I CYCGRG 1 cut(s) 528
ApeKI GCWGC 2 cut(s) 193, 428
ApoI RAATTY 1 cut(s) 485
Asp700I GAANNNNTTC 1 cut(s) 822
AspLEI GCGC 2 cut(s) 242, 908
AsuHPI GGTGA 3 cut(s) 166, 449, 615
AvaI CYCGRG 1 cut(s) 528
BamHI GGATCC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 57
BbvCI CCTCAGC 1 cut(s) 744
BbvI GCAGC 2 cut(s) 180, 415
BccI CCATC 4 cut(s) 75, 358, 542, 716
BciT130I CCWGG 2 cut(s) 627, 828
BclI TGATCA 1 cut(s) 636
BcoDI GTCTC 2 cut(s) 93, 347
BfmI CTRYAG 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 391
BisI GCNGC 2 cut(s) 194, 429
BlsI GCNGC 2 cut(s) 195, 430
Bme1390I CCNGG 2 cut(s) 627, 828
BmeT110I CYCGRG 1 cut(s) 528
BmiI GGNNCC 3 cut(s) 258, 750, 819
BmrFI CCNGG 2 cut(s) 627, 828
BmrI ACTGGG 2 cut(s) 666, 777
BmsI GCATC 1 cut(s) 108
BmuI ACTGGG 2 cut(s) 666, 777
BpiI GAAGAC 1 cut(s) 57
BplI GAGNNNNNCTC 2 cut(s) 415, 447
BpmI CTGGAG 1 cut(s) 648
Bpu10I CCTNAGC 1 cut(s) 744
BsaHI GRCGYC 1 cut(s) 467
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 288, 347, 827
Bse1I ACTGG 3 cut(s) 113, 661, 772
BseBI CCWGG 2 cut(s) 627, 828
BseGI GGATG 2 cut(s) 412, 727
BseLI CCNNNNNNNGG 4 cut(s) 41, 288, 347, 827
BseMII CTCAG 1 cut(s) 735
BseNI ACTGG 3 cut(s) 113, 661, 772
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 2 cut(s) 180, 415
Bsh1236I CGCG 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 528
BslFI GGGAC 1 cut(s) 674
BslI CCNNNNNNNGG 4 cut(s) 41, 288, 347, 827
BsmAI GTCTC 2 cut(s) 93, 347
BsmFI GGGAC 1 cut(s) 674
BsoBI CYCGRG 1 cut(s) 528
Bsp1407I TGTACA 1 cut(s) 276
Bsp143I GATC 3 cut(s) 235, 256, 636
BspACI CCGC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 736
BspFNI CGCG 1 cut(s) 240
BspHI TCATGA 1 cut(s) 639
BspLI GGNNCC 3 cut(s) 258, 750, 819
BspMAI CTGCAG 1 cut(s) 198
BspMI ACCTGC 1 cut(s) 391
BspPI GGATC 3 cut(s) 243, 251, 264
BspQI GCTCTTC 1 cut(s) 947
BsrGI TGTACA 1 cut(s) 276
BsrI ACTGG 3 cut(s) 113, 661, 772
BssMI GATC 3 cut(s) 235, 256, 636
BssNI GRCGYC 1 cut(s) 467
Bst2UI CCWGG 2 cut(s) 627, 828
Bst4CI ACNGT 4 cut(s) 104, 377, 913, 969
Bst6I CTCTTC 2 cut(s) 165, 947
BstACI GRCGYC 1 cut(s) 467
BstAUI TGTACA 1 cut(s) 276
BstDEI CTNAG 3 cut(s) 559, 744, 753
BstF5I GGATG 2 cut(s) 412, 727
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 2 cut(s) 242, 908
BstKTI GATC 3 cut(s) 238, 259, 639
BstMAI GTCTC 2 cut(s) 93, 347
BstMBI GATC 3 cut(s) 235, 256, 636
BstMWI GCNNNNNNNGC 1 cut(s) 905
BstNI CCWGG 2 cut(s) 627, 828
BstSCI CCNGG 2 cut(s) 625, 826
BstSFI CTRYAG 1 cut(s) 194
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 180, 415
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 689
BstYI RGATCY 1 cut(s) 256
BtsCI GGATG 2 cut(s) 412, 727
BtsIMutI CAGTG 1 cut(s) 373
BveI ACCTGC 1 cut(s) 391
CaiI CAGNNNCTG 1 cut(s) 108
CciI TCATGA 1 cut(s) 639
CfoI GCGC 2 cut(s) 242, 908
CseI GACGC 1 cut(s) 62
Csp6I GTAC 2 cut(s) 277, 848
CviAII CATG 6 cut(s) 288, 324, 434, 640, 787, 808
CviJI RGCY 9 cut(s) 68, 181, 211, 293, 475, 668, 685, 693, 704
CviKI_1 RGCY 9 cut(s) 68, 181, 211, 293, 475, 668, 685, 693, 704
CviQI GTAC 2 cut(s) 277, 848
DdeI CTNAG 3 cut(s) 559, 744, 753
DpnI GATC 3 cut(s) 237, 258, 638
DpnII GATC 3 cut(s) 235, 256, 636
Eam1104I CTCTTC 2 cut(s) 165, 947
EarI CTCTTC 2 cut(s) 165, 947
Eco88I CYCGRG 1 cut(s) 528
EcoRII CCWGG 2 cut(s) 625, 826
FaeI CATG 6 cut(s) 291, 327, 437, 643, 790, 811
FaqI GGGAC 1 cut(s) 674
FatI CATG 6 cut(s) 287, 323, 433, 639, 786, 807
FbaI TGATCA 1 cut(s) 636
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 194, 429
FokI GGATG 2 cut(s) 399, 734
Fsp4HI GCNGC 2 cut(s) 194, 429
FspI TGCGCA 1 cut(s) 907
GlaI GCGC 2 cut(s) 241, 907
GluI GCNGC 2 cut(s) 194, 429
GsuI CTGGAG 1 cut(s) 648
HgaI GACGC 1 cut(s) 62
HhaI GCGC 2 cut(s) 242, 908
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 6 cut(s) 291, 327, 437, 643, 790, 811
Hin6I GCGC 2 cut(s) 240, 906
HinP1I GCGC 2 cut(s) 240, 906
HinfI GANTC 4 cut(s) 157, 535, 620, 782
HphI GGTGA 3 cut(s) 166, 449, 615
Hpy166II GTNNAC 5 cut(s) 277, 279, 304, 511, 589
Hpy188I TCNGA 3 cut(s) 139, 605, 651
Hpy188III TCNNGA 3 cut(s) 35, 503, 640
Hpy8I GTNNAC 5 cut(s) 277, 279, 304, 511, 589
HpyAV CCTTC 3 cut(s) 8, 806, 833
HpyCH4III ACNGT 4 cut(s) 104, 377, 913, 969
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 4 cut(s) 121, 196, 395, 899
HpyF10VI GCNNNNNNNGC 1 cut(s) 905
HpyF3I CTNAG 3 cut(s) 559, 744, 753
HpySE526I ACGT 1 cut(s) 467
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 6 cut(s) 291, 327, 437, 643, 790, 811
HspAI GCGC 2 cut(s) 240, 906
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 3 cut(s) 235, 256, 636
LguI GCTCTTC 1 cut(s) 947
LmnI GCTCC 1 cut(s) 701
Lsp1109I GCAGC 2 cut(s) 180, 415
LweI GCATC 1 cut(s) 108
MaeII ACGT 1 cut(s) 467
MaeIII GTNAC 6 cut(s) 104, 154, 463, 532, 803, 929
MalI GATC 3 cut(s) 237, 258, 638
MboI GATC 3 cut(s) 235, 256, 636
MboII GAAGA 7 cut(s) 62, 90, 124, 152, 534, 910, 964
MflI RGATCY 1 cut(s) 256
MluCI AATT 5 cut(s) 485, 736, 790, 836, 874
MlyI GAGTC 2 cut(s) 151, 529
MmeI TCCRAC 2 cut(s) 213, 499
MroXI GAANNNNTTC 1 cut(s) 822
MseI TTAA 6 cut(s) 336, 369, 540, 839, 926, 962
MspR9I CCNGG 2 cut(s) 627, 828
MvaI CCWGG 2 cut(s) 627, 828
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 905
NdeII GATC 3 cut(s) 235, 256, 636
NlaIII CATG 6 cut(s) 291, 327, 437, 643, 790, 811
NlaIV GGNNCC 3 cut(s) 258, 750, 819
NmuCI GTSAC 4 cut(s) 154, 463, 532, 803
NsbI TGCGCA 1 cut(s) 907
PagI TCATGA 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 947
PdmI GAANNNNTTC 1 cut(s) 822
PfeI GAWTC 2 cut(s) 620, 782
PflMI CCANNNNNTGG 1 cut(s) 288
PfoI TCCNGGA 1 cut(s) 826
PkrI GCNGC 2 cut(s) 195, 430
PleI GAGTC 2 cut(s) 151, 529
PpsI GAGTC 2 cut(s) 151, 529
PsiI TTATAA 2 cut(s) 29, 735
Psp6I CCWGG 2 cut(s) 625, 826
PspGI CCWGG 2 cut(s) 625, 826
PspN4I GGNNCC 3 cut(s) 258, 750, 819
PstI CTGCAG 1 cut(s) 198
PstNI CAGNNNCTG 1 cut(s) 108
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 2 cut(s) 278, 849
RsaNI GTAC 2 cut(s) 277, 848
SapI GCTCTTC 1 cut(s) 947
SaqAI TTAA 6 cut(s) 336, 369, 540, 839, 926, 962
SatI GCNGC 2 cut(s) 194, 429
Sau3AI GATC 3 cut(s) 235, 256, 636
SchI GAGTC 2 cut(s) 151, 529
ScrFI CCNGG 2 cut(s) 627, 828
SfaNI GCATC 1 cut(s) 108
SfcI CTRYAG 1 cut(s) 194
Sse9I AATT 5 cut(s) 485, 736, 790, 836, 874
SsiI CCGC 1 cut(s) 268
SspI AATATT 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 625, 826
TaaI ACNGT 4 cut(s) 104, 377, 913, 969
TaiI ACGT 1 cut(s) 470
TaqI TCGA 1 cut(s) 921
TasI AATT 5 cut(s) 485, 736, 790, 836, 874
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 2 cut(s) 620, 782
Tru1I TTAA 6 cut(s) 336, 369, 540, 839, 926, 962
Tru9I TTAA 6 cut(s) 336, 369, 540, 839, 926, 962
TscAI CASTG 1 cut(s) 380
TseFI GTSAC 4 cut(s) 154, 463, 532, 803
TseI GCWGC 2 cut(s) 193, 428
Tsp45I GTSAC 4 cut(s) 154, 463, 532, 803
TspDTI ATGAA 8 cut(s) 27, 261, 276, 729, 795, 803, 882, 965
TspGWI ACGGA 1 cut(s) 622
TspRI CASTG 1 cut(s) 380
Van91I CCANNNNNTGG 1 cut(s) 288
XapI RAATTY 1 cut(s) 485
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 822
ZraI GACGTC 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.