Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009942.1

Orthogroup ID

OG0009849

Physical Location & Seq

Genomic Coordinates Reverse (-)

18929 .. 23058

Gene Structure 4130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009942.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

atgagtatcccaaacaaggatgagaagaacaacaagggcttcttcgccgccatgagttccggcctctccgtcttcggcagcgccatgcaccgatccgttggcggttactggaagatgatgcaaaagtatataggttcagatataacatcaatggtgactcttcctgtatatatttttgagccaatgacaatgctgcagaaaatggcagagcttatggaatattcacacttgttggatcgcgctgatgaatgtgaggatccttatatgcggttggtgtacaccacttcatgggctatatctgtctactacgcctaccagcgaacatggaaaccatttaatcctatacttggggagacttatgagatggttaatcactgtgggattacattcgttgcagagcaggttagtcatcatccaccaatgagtgctgctcatggtgaaaatgagcatttcacttatgatgtgacgtcaaagctgaaaactaaatttttaggaaactctcttgatgtttaccctgttggaagaacccgagtgactcttaaaagagatggtgtagtcttagatttagtgccacctcccacaaaggtaaacaacttgatattcggacggacttgggttgattcacctggagagatgatcatgacaaatctgacaactggggacaaagctgtgctatgtttccagccttgtggctggtttggagctggtcgttatgaagtggatggatatgtttataattctgctgaggaacctaagatattgatgactgggaaatggaatgaatccatgaattatcaaccttgtgacatggaaggggaaccccttccaggaacagaattaaaagaggtttggcatattgccgatgttccggagaatgacaaatttcagtacacatactttgcacataaaataaatagctttaacactgctcctaaaaagttgttggcatcggactcgcgtttgcgccctgatagatatgcacttgagaacggcgatctatccaaagcaggtgcagagaagagcagattggaggagaggcagagagctgaaaagagagaacgagaagcaaaggaacaaaagtttacaccaagatggttcgacttaactgaggaggttacacctacaccgtggggtgacttggaagtctatcagtataacagtaaatatactcaacaccgtgctgcaattgatagctctgactctgttgatggggttgatgtgaaatcaattgacttcaacccatggcagtatggcaatgtgtccgcagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Oxysterol_BP

Protein Analysis

423

Amino Acids

48.4

Weight (kDa)

5.44

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59420
fragaria_vesca	FvH4_3g36500 FvH4_3g36500
malus_domestica	MD03G1090000.v1.1 MD11G1099300.v1.1
prunus_persica	Prupe.6G074200_v2.0.a1 Prupe.6G074200_v2.0.a1
pyrus_communis	pycom03g07160 pycom11g08370
rosa_chinensis	RchiOBHm_Chr5g0065361 RchiOBHm_Chr5g0065411
rosa_laevigata	RLG00000035786
rosa_multiflora	Rmu_sc0009942.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015830
rosa_rugosa	Rorug05G0371500 Rorug05G0371500 Rorug05G0371600
rosa_samantha	Rh5BG444700 Rh5CG467000 Rh5DG457000
rosa_wichuraiana	Rw5G040310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	735
AarI	CACCTGC	1 cut(s)	998
AasI	GACNNNNNNGTC	1 cut(s)	1142
AatII	GACGTC	1 cut(s)	470
Acc36I	ACCTGC	2 cut(s)	391, 998
AccB7I	CCANNNNNTGG	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	303
AccII	CGCG	2 cut(s)	240, 958
AccIII	TCCGGA	1 cut(s)	868
AciI	CCGC	4 cut(s)	48, 102, 268, 1263
AclWI	GGATC	4 cut(s)	87, 243, 251, 264
AcsI	RAATTY	2 cut(s)	485, 881
AcyI	GRCGYC	1 cut(s)	467
AfaI	GTAC	2 cut(s)	278, 890
AfiI	CCNNNNNNNGG	4 cut(s)	16, 288, 347, 827
AgsI	TTSAA	1 cut(s)	1237
AjnI	CCWGG	2 cut(s)	625, 826
AjuI	GAANNNNNNNTTGG	2 cut(s)	1010, 1042
AluBI	AGCT	7 cut(s)	211, 475, 668, 704, 918, 1046, 1194
AluI	AGCT	7 cut(s)	211, 475, 668, 704, 918, 1046, 1194
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	4 cut(s)	87, 243, 251, 264
Ama87I	CYCGRG	1 cut(s)	528
Aor13HI	TCCGGA	1 cut(s)	868
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	4 cut(s)	78, 193, 428, 1181
ApoI	RAATTY	2 cut(s)	485, 881
Asp700I	GAANNNNTTC	1 cut(s)	822
AspLEI	GCGC	3 cut(s)	83, 242, 966
AsuHPI	GGTGA	4 cut(s)	166, 449, 615, 1145
AvaI	CYCGRG	1 cut(s)	528
BamHI	GGATCC	1 cut(s)	256
BbsI	GAAGAC	1 cut(s)	64
BbvCI	CCTCAGC	1 cut(s)	744
BbvI	GCAGC	4 cut(s)	90, 180, 415, 1168
BccI	CCATC	5 cut(s)	358, 542, 716, 1086, 1202
BceAI	ACGGC	1 cut(s)	1006
BcgI	CGANNNNNNTGC	2 cut(s)	936, 970
BciT130I	CCWGG	2 cut(s)	627, 828
BciVI	GTATCC	1 cut(s)	17
BclI	TGATCA	1 cut(s)	636
BcoDI	GTCTC	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	194
BfoI	RGCGCY	1 cut(s)	84
BfuAI	ACCTGC	2 cut(s)	391, 998
BfuI	GTATCC	1 cut(s)	17
BisI	GCNGC	5 cut(s)	48, 79, 194, 429, 1182
BlsI	GCNGC	5 cut(s)	49, 80, 195, 430, 1183
Bme1390I	CCNGG	2 cut(s)	627, 828
BmeT110I	CYCGRG	1 cut(s)	528
BmiI	GGNNCC	3 cut(s)	258, 750, 819
BmrFI	CCNGG	2 cut(s)	627, 828
BmrI	ACTGGG	2 cut(s)	666, 777
BmsI	GCATC	2 cut(s)	108, 956
BmuI	ACTGGG	2 cut(s)	666, 777
BpiI	GAAGAC	1 cut(s)	64
BplI	GAGNNNNNCTC	2 cut(s)	415, 447
BpmI	CTGGAG	1 cut(s)	648
Bpu10I	CCTNAGC	1 cut(s)	744
BpuEI	CTTGAG	1 cut(s)	1004
BsaHI	GRCGYC	1 cut(s)	467
BsaJI	CCNNGG	2 cut(s)	1127, 1241
BsaWI	WCCGGW	1 cut(s)	868
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 288, 347, 827
Bse1I	ACTGG	3 cut(s)	113, 661, 772
Bse3DI	GCAATG	1 cut(s)	1261
BseAI	TCCGGA	1 cut(s)	868
BseBI	CCWGG	2 cut(s)	627, 828
BseDI	CCNNGG	2 cut(s)	1127, 1241
BseGI	GGATG	3 cut(s)	25, 412, 727
BseLI	CCNNNNNNNGG	4 cut(s)	16, 288, 347, 827
BseMI	GCAATG	1 cut(s)	1261
BseMII	CTCAG	2 cut(s)	735, 1098
BseNI	ACTGG	3 cut(s)	113, 661, 772
BseRI	GAGGAG	2 cut(s)	1046, 1124
BseXI	GCAGC	4 cut(s)	90, 180, 415, 1168
BsgI	GTGCAG	1 cut(s)	1032
Bsh1236I	CGCG	2 cut(s)	240, 958
BshFI	GGCC	1 cut(s)	63
BsiHKCI	CYCGRG	1 cut(s)	528
BsiSI	CCGG	2 cut(s)	60, 869
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	4 cut(s)	16, 288, 347, 827
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	674
BsnI	GGCC	1 cut(s)	63
BsoBI	CYCGRG	1 cut(s)	528
Bsp13I	TCCGGA	1 cut(s)	868
Bsp1407I	TGTACA	1 cut(s)	276
Bsp143I	GATC	5 cut(s)	92, 235, 256, 636, 994
Bsp19I	CCATGG	1 cut(s)	1241
BspACI	CCGC	4 cut(s)	48, 102, 268, 1263
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	2 cut(s)	736, 1099
BspEI	TCCGGA	1 cut(s)	868
BspFNI	CGCG	2 cut(s)	240, 958
BspHI	TCATGA	1 cut(s)	639
BspLI	GGNNCC	3 cut(s)	258, 750, 819
BspMAI	CTGCAG	1 cut(s)	198
BspMI	ACCTGC	2 cut(s)	391, 998
BspPI	GGATC	4 cut(s)	87, 243, 251, 264
BspQI	GCTCTTC	1 cut(s)	1013
BsrDI	GCAATG	1 cut(s)	1261
BsrGI	TGTACA	1 cut(s)	276
BsrI	ACTGG	3 cut(s)	113, 661, 772
BssECI	CCNNGG	2 cut(s)	1127, 1241
BssMI	GATC	5 cut(s)	92, 235, 256, 636, 994
BssNI	GRCGYC	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	1241
Bst2UI	CCWGG	2 cut(s)	627, 828
Bst4CI	ACNGT	4 cut(s)	377, 1128, 1160, 1178
Bst6I	CTCTTC	2 cut(s)	165, 1013
BstACI	GRCGYC	1 cut(s)	467
BstAUI	TGTACA	1 cut(s)	276
BstDEI	CTNAG	4 cut(s)	559, 744, 753, 1107
BstDSI	CCRYGG	2 cut(s)	1127, 1241
BstF5I	GGATG	3 cut(s)	25, 412, 727
BstFNI	CGCG	2 cut(s)	240, 958
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	3 cut(s)	83, 242, 966
BstKTI	GATC	5 cut(s)	95, 238, 259, 639, 997
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	5 cut(s)	92, 235, 256, 636, 994
BstNI	CCWGG	2 cut(s)	627, 828
BstSCI	CCNGG	2 cut(s)	625, 826
BstSFI	CTRYAG	1 cut(s)	194
BstUI	CGCG	2 cut(s)	240, 958
BstV1I	GCAGC	4 cut(s)	90, 180, 415, 1168
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	256
BsuI	GTATCC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	63
BtgI	CCRYGG	2 cut(s)	1127, 1241
BtsCI	GGATG	3 cut(s)	25, 412, 727
BtsI	GCAGTG	1 cut(s)	924
BtsIMutI	CAGTG	2 cut(s)	373, 924
BveI	ACCTGC	2 cut(s)	391, 998
CciI	TCATGA	1 cut(s)	639
CfoI	GCGC	3 cut(s)	83, 242, 966
Csp6I	GTAC	2 cut(s)	277, 889
CviAII	CATG	9 cut(s)	52, 85, 288, 324, 434, 640, 787, 808, 1242
CviQI	GTAC	2 cut(s)	277, 889
DdeI	CTNAG	4 cut(s)	559, 744, 753, 1107
DpnI	GATC	5 cut(s)	94, 237, 258, 638, 996
DpnII	GATC	5 cut(s)	92, 235, 256, 636, 994
DrdI	GACNNNNNNGTC	1 cut(s)	1142
DseDI	GACNNNNNNGTC	1 cut(s)	1142
Eam1104I	CTCTTC	2 cut(s)	165, 1013
EarI	CTCTTC	2 cut(s)	165, 1013
Eco130I	CCWWGG	1 cut(s)	1241
Eco88I	CYCGRG	1 cut(s)	528
EcoRII	CCWGG	2 cut(s)	625, 826
EcoT14I	CCWWGG	1 cut(s)	1241
ErhI	CCWWGG	1 cut(s)	1241
FaeI	CATG	9 cut(s)	55, 88, 291, 327, 437, 643, 790, 811, 1245
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	9 cut(s)	51, 84, 287, 323, 433, 639, 786, 807, 1241
FbaI	TGATCA	1 cut(s)	636
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	5 cut(s)	48, 79, 194, 429, 1182
FokI	GGATG	3 cut(s)	32, 399, 734
Fsp4HI	GCNGC	5 cut(s)	48, 79, 194, 429, 1182
GlaI	GCGC	3 cut(s)	82, 241, 965
GluI	GCNGC	5 cut(s)	48, 79, 194, 429, 1182
GsuI	CTGGAG	1 cut(s)	648
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	2 cut(s)	60, 869
HhaI	GCGC	3 cut(s)	83, 242, 966
Hin1I	GRCGYC	1 cut(s)	467
Hin1II	CATG	9 cut(s)	55, 88, 291, 327, 437, 643, 790, 811, 1245
Hin6I	GCGC	3 cut(s)	81, 240, 964
HinP1I	GCGC	3 cut(s)	81, 240, 964
HinfI	GANTC	6 cut(s)	157, 535, 620, 782, 953, 1199
HpaII	CCGG	2 cut(s)	60, 869
HphI	GGTGA	4 cut(s)	166, 449, 615, 1145
Hpy166II	GTNNAC	7 cut(s)	277, 279, 304, 511, 589, 891, 1083
Hpy188I	TCNGA	5 cut(s)	139, 605, 651, 952, 1198
Hpy188III	TCNNGA	3 cut(s)	503, 640, 869
Hpy8I	GTNNAC	7 cut(s)	277, 279, 304, 511, 589, 891, 1083
HpyAV	CCTTC	2 cut(s)	806, 833
HpyCH4III	ACNGT	4 cut(s)	377, 1128, 1160, 1178
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	8 cut(s)	88, 121, 196, 395, 902, 980, 1013, 1184
HpyF3I	CTNAG	4 cut(s)	559, 744, 753, 1107
HpySE526I	ACGT	1 cut(s)	467
Hsp92I	GRCGYC	1 cut(s)	467
Hsp92II	CATG	9 cut(s)	55, 88, 291, 327, 437, 643, 790, 811, 1245
HspAI	GCGC	3 cut(s)	81, 240, 964
Kpn2I	TCCGGA	1 cut(s)	868
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	5 cut(s)	92, 235, 256, 636, 994
LguI	GCTCTTC	1 cut(s)	1013
LmnI	GCTCC	2 cut(s)	701, 934
Lsp1109I	GCAGC	4 cut(s)	90, 180, 415, 1168
LweI	GCATC	2 cut(s)	108, 956
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	7 cut(s)	104, 154, 463, 532, 803, 1114, 1133
MalI	GATC	5 cut(s)	94, 237, 258, 638, 996
MboI	GATC	5 cut(s)	92, 235, 256, 636, 994
MboII	GAAGA	7 cut(s)	34, 37, 64, 124, 152, 534, 1030
MfeI	CAATTG	2 cut(s)	1185, 1227
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	7 cut(s)	485, 736, 790, 836, 881, 1185, 1227
MlyI	GAGTC	4 cut(s)	151, 529, 947, 1193
MmeI	TCCRAC	2 cut(s)	213, 499
MnlI	CCTC	9 cut(s)	74, 247, 585, 739, 838, 1024, 1029, 1102, 1105
MroI	TCCGGA	1 cut(s)	868
MroXI	GAANNNNTTC	1 cut(s)	822
MseI	TTAA	6 cut(s)	336, 369, 540, 839, 921, 1103
MslI	CAYNNNNRTG	1 cut(s)	1090
MspI	CCGG	2 cut(s)	60, 869
MspR9I	CCNGG	2 cut(s)	627, 828
MunI	CAATTG	2 cut(s)	1185, 1227
MvaI	CCWGG	2 cut(s)	627, 828
MvnI	CGCG	2 cut(s)	240, 958
NcoI	CCATGG	1 cut(s)	1241
NdeII	GATC	5 cut(s)	92, 235, 256, 636, 994
NlaIII	CATG	9 cut(s)	55, 88, 291, 327, 437, 643, 790, 811, 1245
NlaIV	GGNNCC	3 cut(s)	258, 750, 819
NmuCI	GTSAC	5 cut(s)	154, 463, 532, 803, 1133
PagI	TCATGA	1 cut(s)	639
PaqCI	CACCTGC	1 cut(s)	998
PciSI	GCTCTTC	1 cut(s)	1013
PdmI	GAANNNNTTC	1 cut(s)	822
PfeI	GAWTC	2 cut(s)	620, 782
PflMI	CCANNNNNTGG	1 cut(s)	288
PfoI	TCCNGGA	1 cut(s)	826
PkrI	GCNGC	5 cut(s)	49, 80, 195, 430, 1183
PleI	GAGTC	4 cut(s)	151, 529, 947, 1193
PpsI	GAGTC	4 cut(s)	151, 529, 947, 1193
PsiI	TTATAA	1 cut(s)	735
Psp6I	CCWGG	2 cut(s)	625, 826
PspGI	CCWGG	2 cut(s)	625, 826
PspN4I	GGNNCC	3 cut(s)	258, 750, 819
PstI	CTGCAG	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	2 cut(s)	278, 890
RsaNI	GTAC	2 cut(s)	277, 889
RseI	CAYNNNNRTG	1 cut(s)	1090
SapI	GCTCTTC	1 cut(s)	1013
SaqAI	TTAA	6 cut(s)	336, 369, 540, 839, 921, 1103
SatI	GCNGC	5 cut(s)	48, 79, 194, 429, 1182
Sau3AI	GATC	5 cut(s)	92, 235, 256, 636, 994
SchI	GAGTC	4 cut(s)	151, 529, 947, 1193
ScrFI	CCNGG	2 cut(s)	627, 828
SfaNI	GCATC	2 cut(s)	108, 956
SfcI	CTRYAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	1090
SmlI	CTYRAG	1 cut(s)	983
SmoI	CTYRAG	1 cut(s)	983
Sse9I	AATT	7 cut(s)	485, 736, 790, 836, 881, 1185, 1227
SsiI	CCGC	4 cut(s)	48, 102, 268, 1263
SspI	AATATT	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	625, 826
StyI	CCWWGG	1 cut(s)	1241
TaaI	ACNGT	4 cut(s)	377, 1128, 1160, 1178
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	1 cut(s)	1098
TasI	AATT	7 cut(s)	485, 736, 790, 836, 881, 1185, 1227
TatI	WGTACW	2 cut(s)	276, 888
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	620, 782
Tru1I	TTAA	6 cut(s)	336, 369, 540, 839, 921, 1103
Tru9I	TTAA	6 cut(s)	336, 369, 540, 839, 921, 1103
TscAI	CASTG	2 cut(s)	380, 931
TseFI	GTSAC	5 cut(s)	154, 463, 532, 803, 1133
TseI	GCWGC	4 cut(s)	78, 193, 428, 1181
Tsp45I	GTSAC	5 cut(s)	154, 463, 532, 803, 1133
TspDTI	ATGAA	5 cut(s)	261, 276, 729, 795, 803
TspGWI	ACGGA	3 cut(s)	58, 85, 622
TspRI	CASTG	2 cut(s)	380, 931
Van91I	CCANNNNNTGG	1 cut(s)	288
XapI	RAATTY	2 cut(s)	485, 881
XmiI	GTMKAC	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	822
ZraI	GACGTC	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.