Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002294

Physical Location & Seq

Genomic Coordinates Forward (+)

31277042 .. 31282577

Gene Structure 5536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36520.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGTGCTCATCGTGGTATGATTTTGGAGAAATGGCGTTGCAAAAGAGGTTGGATTACGGGTTCAATGGCTTTCAGGTGCCGGTCACCCCTCGAGCTCCAAGATCAGCGAGGAGAAGGAGTGCAATTAGCAAGAGATTCGAAGACAATCCAATGGGCGCATTTGACTTATTGGCCACCGTAGCTGGCAAGTTATTGCTCGAGGGAGAGAGTTCTGCTGCTTCCAGTCATACATCAACTGGAAAAGAAAAGTGTACAATCGTTAATGAAAGTTGTCTGGATGGAGACAAGCCACTGAAAGTGGAACCTTCTGATCAAGGTAGCTGTGACAGGAAGTTCTTCGTATCTGATAATATCTCACAGGGTCATAATCAAAGTTGCAGCTCAAAGGAGTCTCCAGTTCATCAGAATGAAAGCCATTCTGTAATGACTACTTCTAATTGCTCGGAGAGGTTTGTTTCTGATATGCTGGTGGGTGGAAAATGTAAGAACGAAATAGGAAGTTTTACTAGTAAAATACAGGCAGGCTTCTCAATGTACAGGGAGTCTGGTGAATGTAAATTAGATGGTGAAGCTAAAGTAATAGTAAAAGATGAGACTAATAAGAGGGGTAAGGTGCTAATTGGTACTGGGGCTGACAATGTGGAGGACCCTATGGTCTGGGAAGGGGAACCTCCTGCACTAGTCAGTTCAGACAGTAGTACCAAGGTGCCTATTTGTGTAGACCATATACCTCAGAAACCTATCCCTGCTAGCAGGGATGATATAAAAGTAGTTAGTAGAGATGATGACGAAAATTCCTCTGGGTGTACTCACCCTAGTACCACCACAAGGTATCTAAGGACAGCGCCACGCATTGGTGATCGAAGAATAAGGAAGATTTTGGCTTCCAGGTATTGGAAAGCAACTCCAAAGATGAAGGATGAAGCACATTCTAATTCTTATAGGGATATGCGACCTATGTACCATGGCAGGAAGAATGGTTACAAACGCCAGAGATCTCAGATGACTGTGCCTTTTAAGAAGAGGAGGCTGTTTGATCGTAGCACAGTTGGGAAATCTGATGGAGGTATTACTAGTGAGAGCTTCTTTGACTCAGGTAAGAAGGGAATCACTGGAAATGCTCCTGCCTCATGTTCAAAGATGCAAGGAGCCAATGCAGTATCTTCTTCAGTAGCAGGTCAACATTCAGCTTTCCAATCTAGGAATTCTCATGTGAAACTCAGGATCAAGTCTTTCAGGGTGCCAGAACTATTTATTGAAATTCCAGAGACGGCAACCGTTGGTTCTTTGAAGAAGACAGTTATGGATGCAGTAACAGCTGTACTTGGTGGTGGGTTGTGTGTTGGTGTACTTCTTCAGGGTAAGAAAGTAAGAGATGACTCTAAAACTCTCCAGCAGACGGGGATTTCTCAAGATGATCAGCTAGATTCTTTGGGATTTACTTTGGAACCTAACCCTTCCCACACTCCCACACCGTTGTGTTCTGGAGATTCGCCCCGTATGCTTCCCTGCGATGCACTTCAGCCTTTAATAAGGTATGCACCTGATCCTAGTAGTGAAGCCTCACTCGAACCTCATATGGCTGCTTTAGGAAGCTTCATCGAAAGTGATCATGATTCAGCACCTTCTCCGACCGATACCTCCACAACAGATTCTAAAGCGCTGGTTGTTGTGCCCGGAATGAGTGCAGAGGCACTTGCTGTAGTTCCTGGGAACAGGAAATCAAAGCGGTTTGATATTGGGCAGCGCCGAATTCGTCGACCTTTCTCTGTTTCTGAAGTGGAAGCACTTGTCCAGGCGGTTGAGAAACTTGGTACTGGAAGGTGGCGTGATGTTAAGATGCGAGCTTTTGAAAATGCCAAGCATCGAACTTATGTGGATTTGAAGGATAAGTGGAAAACACTAGTGCACACGGCAAGAATATCTCCTCAACAAAGGAGAGGTGAGCCTGTCCCCCAGGAACTCTTGGACCGTGTCCTAACCGCGCATGCTTACTGGTCCCAGCAGCAAGCTAAACAACAGCTCAAACATCCCGAGAGCTGCGTTCTGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008301 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0023052 GO:0031090 GO:0031627 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032200 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0035556 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

685

Amino Acids

75.21

Weight (kDa)

9.13

Isoelectric Point (pI)

53.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_TPR1	PF23603	386 - 454	1.2e-39	Telomere repeat-binding protein 1-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07540 AT3G46590 AT3G46590 AT3G46590 AT3G46590 AT3G46590 AT5G59430 AT5G59430 AT5G59430 AT5G59430 AT5G59430
fragaria_vesca	FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520
malus_domestica	MD03G1089900.v1.1 MD11G1099200.v1.1
prunus_persica	Prupe.6G074100_v2.0.a1 Prupe.6G074100_v2.0.a1
pyrus_communis	pycom03g07150 pycom11g08340
rosa_chinensis	RchiOBHm_Chr5g0065391 RchiOBHm_Chr5g0065401 RchiOBHm_Chr5g0065451
rosa_laevigata	RLG00000035788
rosa_multiflora	Rmu_sc0001010.1_g000092
rosa_roxburghii	Rroxscaffold_1G00015800
rosa_rugosa	Rorug05G0371900 Rorug05G0372000 Rorug05G0372100 Rorug05G0372100
rosa_samantha	Rh5AG429700 Rh5BG444900 Rh5CG467200 Rh5DG457400
rosa_wichuraiana	Rw5G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	653
Acc36I	ACCTGC	1 cut(s)	1166
AccB1I	GGYRCC	3 cut(s)	76, 706, 1240
AccB7I	CCANNNNNTGG	2 cut(s)	854, 894
AccI	GTMKAC	2 cut(s)	720, 1759
AccII	CGCG	1 cut(s)	1985
AciI	CCGC	3 cut(s)	1729, 1799, 1983
AclWI	GGATC	2 cut(s)	1232, 1541
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	4 cut(s)	793, 1204, 1260, 1752
AcuI	CTGAAG	4 cut(s)	1152, 1340, 1505, 1797
AfeI	AGCGCT	1 cut(s)	1662
AfiI	CCNNNNNNNGG	4 cut(s)	828, 854, 894, 1399
AgsI	TTSAA	6 cut(s)	64, 1137, 1259, 1291, 1853, 1885
AhlI	ACTAGT	4 cut(s)	506, 679, 1073, 1903
AjnI	CCWGG	4 cut(s)	887, 1708, 1794, 1956
AleI	CACNNNNGTG	1 cut(s)	1477
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
Alw21I	GWGCWC	3 cut(s)	8, 97, 1911
Alw26I	GTCTC	4 cut(s)	276, 396, 587, 1262
Alw44I	GTGCAC	1 cut(s)	1907
AlwI	GGATC	2 cut(s)	1232, 1541
Ama87I	CYCGRG	3 cut(s)	90, 197, 2033
Aor51HI	AGCGCT	1 cut(s)	1662
AoxI	GGCC	1 cut(s)	171
ApaLI	GTGCAC	1 cut(s)	1907
ApeKI	GCWGC	6 cut(s)	215, 378, 1583, 1744, 2005, 2040
ApoI	RAATTY	4 cut(s)	793, 1204, 1260, 1752
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	5 cut(s)	158, 847, 1663, 1749, 1987
AspS9I	GGNCC	3 cut(s)	646, 1969, 1998
AsuC2I	CCSGG	1 cut(s)	1677
AsuHPI	GGTGA	6 cut(s)	76, 560, 578, 803, 869, 1955
AsuII	TTCGAA	1 cut(s)	138
AsuNHI	GCTAGC	1 cut(s)	749
AvaI	CYCGRG	3 cut(s)	90, 197, 2033
AvaII	GGWCC	3 cut(s)	646, 1969, 1998
BaeGI	GKGCMC	2 cut(s)	1677, 1911
BaeI	ACNNNNGTAYC	6 cut(s)	682, 715, 802, 835, 944, 977
BalI	TGGCCA	1 cut(s)	173
BanI	GGYRCC	3 cut(s)	76, 706, 1240
BanII	GRGCYC	1 cut(s)	97
BarI	GAAGNNNNNNTAC	2 cut(s)	965, 997
BbsI	GAAGAC	2 cut(s)	147, 1301
Bbv12I	GWGCWC	3 cut(s)	8, 97, 1911
BbvI	GCAGC	6 cut(s)	202, 390, 1570, 1756, 2017, 2027
BccI	CCATC	3 cut(s)	272, 557, 1055
BceAI	ACGGC	2 cut(s)	1287, 1929
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	4 cut(s)	889, 1710, 1796, 1958
BclI	TGATCA	3 cut(s)	310, 1417, 1609
BcnI	CCSGG	1 cut(s)	1677
BcoDI	GTCTC	4 cut(s)	276, 396, 587, 1262
BcuI	ACTAGT	4 cut(s)	506, 679, 1073, 1903
BfaI	CTAG	9 cut(s)	507, 680, 750, 816, 1074, 1200, 1424, 1551, 1904
BfmI	CTRYAG	1 cut(s)	1701
BfoI	RGCGCY	3 cut(s)	848, 1664, 1750
BfuAI	ACCTGC	1 cut(s)	1166
BglII	AGATCT	1 cut(s)	995
BisI	GCNGC	6 cut(s)	216, 379, 1584, 1745, 2006, 2041
BlsI	GCNGC	6 cut(s)	217, 380, 1585, 1746, 2007, 2042
Bme1390I	CCNGG	5 cut(s)	889, 1677, 1710, 1796, 1958
Bme18I	GGWCC	3 cut(s)	646, 1969, 1998
BmeT110I	CYCGRG	3 cut(s)	90, 197, 2033
BmgT120I	GGNCC	3 cut(s)	646, 1969, 1998
BmiI	GGNNCC	9 cut(s)	78, 303, 648, 669, 708, 1150, 1242, 1449, 2000
BmrFI	CCNGG	5 cut(s)	889, 1677, 1710, 1796, 1958
BmrI	ACTGGG	1 cut(s)	636
BmsI	GCATC	5 cut(s)	1131, 1297, 1504, 1830, 1873
BmtI	GCTAGC	1 cut(s)	753
BmuI	ACTGGG	1 cut(s)	636
BpiI	GAAGAC	2 cut(s)	147, 1301
BpmI	CTGGAG	3 cut(s)	378, 1376, 1506
Bpu14I	TTCGAA	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	1395
BpuMI	CCSGG	1 cut(s)	1677
BsaJI	CCNNGG	4 cut(s)	702, 964, 1709, 1956
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bsc4I	CCNNNNNNNGG	4 cut(s)	828, 854, 894, 1399
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	7 cut(s)	222, 241, 395, 631, 1117, 1822, 2000
BseBI	CCWGG	4 cut(s)	889, 1710, 1796, 1958
BseDI	CCNNGG	4 cut(s)	702, 964, 1709, 1956
BseGI	GGATG	5 cut(s)	283, 763, 925, 1312, 2029
BseLI	CCNNNNNNNGG	4 cut(s)	828, 854, 894, 1399
BseMII	CTCAG	4 cut(s)	746, 1013, 1107, 1234
BseNI	ACTGG	7 cut(s)	222, 241, 395, 631, 1117, 1822, 2000
BseRI	GAGGAG	3 cut(s)	124, 1039, 1917
BseSI	GKGCMC	2 cut(s)	1677, 1911
BseXI	GCAGC	6 cut(s)	202, 390, 1570, 1756, 2017, 2027
BseYI	CCCAGC	1 cut(s)	2001
BsgI	GTGCAG	2 cut(s)	660, 1707
Bsh1236I	CGCG	1 cut(s)	1985
Bsh1285I	CGRYCG	1 cut(s)	1635
BshFI	GGCC	1 cut(s)	173
BshNI	GGYRCC	3 cut(s)	76, 706, 1240
BsiEI	CGRYCG	1 cut(s)	1635
BsiHKAI	GWGCWC	3 cut(s)	8, 97, 1911
BsiHKCI	CYCGRG	3 cut(s)	90, 197, 2033
BsiSI	CCGG	2 cut(s)	80, 1677
BslFI	GGGAC	2 cut(s)	1937, 1984
BslI	CCNNNNNNNGG	4 cut(s)	828, 854, 894, 1399
BsmAI	GTCTC	4 cut(s)	276, 396, 587, 1262
BsmBI	CGTCTC	1 cut(s)	1262
BsmFI	GGGAC	2 cut(s)	1937, 1984
BsnI	GGCC	1 cut(s)	173
BsoBI	CYCGRG	3 cut(s)	90, 197, 2033
Bsp119I	TTCGAA	1 cut(s)	138
Bsp1286I	GDGCHC	4 cut(s)	8, 97, 1677, 1911
Bsp1407I	TGTACA	2 cut(s)	251, 534
Bsp143I	GATC	9 cut(s)	101, 310, 859, 995, 1036, 1224, 1417, 1546, 1609
Bsp19I	CCATGG	1 cut(s)	964
BspACI	CCGC	3 cut(s)	1729, 1799, 1983
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	4 cut(s)	745, 1012, 1106, 1233
BspFNI	CGCG	1 cut(s)	1985
BspHI	TCATGA	1 cut(s)	1612
BspLI	GGNNCC	9 cut(s)	78, 303, 648, 669, 708, 1150, 1242, 1449, 2000
BspMI	ACCTGC	1 cut(s)	1166
BspOI	GCTAGC	1 cut(s)	753
BspPI	GGATC	2 cut(s)	1232, 1541
BspT104I	TTCGAA	1 cut(s)	138
BspT107I	GGYRCC	3 cut(s)	76, 706, 1240
BsrFI	RCCGGY	1 cut(s)	79
BsrGI	TGTACA	2 cut(s)	251, 534
BsrI	ACTGG	7 cut(s)	222, 241, 395, 631, 1117, 1822, 2000
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	4 cut(s)	702, 964, 1709, 1956
BssMI	GATC	9 cut(s)	101, 310, 859, 995, 1036, 1224, 1417, 1546, 1609
BssT1I	CCWWGG	2 cut(s)	702, 964
Bst2UI	CCWGG	4 cut(s)	889, 1710, 1796, 1958
Bst4CI	ACNGT	8 cut(s)	178, 695, 1009, 1048, 1279, 1300, 1476, 1973
Bst6I	CTCTTC	1 cut(s)	1016
BstAUI	TGTACA	2 cut(s)	251, 534
BstBI	TTCGAA	1 cut(s)	138
BstC8I	GCNNGC	6 cut(s)	184, 523, 751, 1845, 1989, 2010
BstDEI	CTNAG	5 cut(s)	732, 836, 999, 1093, 1220
BstDSI	CCRYGG	1 cut(s)	964
BstEII	GGTNACC	1 cut(s)	82
BstF5I	GGATG	5 cut(s)	283, 763, 925, 1312, 2029
BstFNI	CGCG	1 cut(s)	1985
BstH2I	RGCGCY	3 cut(s)	848, 1664, 1750
BstHHI	GCGC	5 cut(s)	158, 847, 1663, 1749, 1987
BstKTI	GATC	9 cut(s)	104, 313, 862, 998, 1039, 1227, 1420, 1549, 1612
BstMAI	GTCTC	4 cut(s)	276, 396, 587, 1262
BstMBI	GATC	9 cut(s)	101, 310, 859, 995, 1036, 1224, 1417, 1546, 1609
BstMCI	CGRYCG	1 cut(s)	1635
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 1316, 1501
BstNI	CCWGG	4 cut(s)	889, 1710, 1796, 1958
BstNSI	RCATGY	1 cut(s)	1991
BstPI	GGTNACC	1 cut(s)	82
BstSCI	CCNGG	5 cut(s)	887, 1675, 1708, 1794, 1956
BstSFI	CTRYAG	1 cut(s)	1701
BstSLI	GKGCMC	2 cut(s)	1677, 1911
BstUI	CGCG	1 cut(s)	1985
BstV1I	GCAGC	6 cut(s)	202, 390, 1570, 1756, 2017, 2027
BstV2I	GAAGAC	2 cut(s)	147, 1301
BstX2I	RGATCY	1 cut(s)	995
BstYI	RGATCY	1 cut(s)	995
BsuRI	GGCC	1 cut(s)	173
BtgI	CCRYGG	1 cut(s)	964
BtgZI	GCGATG	1 cut(s)	1527
BtsCI	GGATG	5 cut(s)	283, 763, 925, 1312, 2029
BtsIMutI	CAGTG	2 cut(s)	290, 1110
BveI	ACCTGC	1 cut(s)	1166
Cac8I	GCNNGC	6 cut(s)	184, 523, 751, 1845, 1989, 2010
CciI	TCATGA	1 cut(s)	1612
CfoI	GCGC	5 cut(s)	158, 847, 1663, 1749, 1987
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	3 cut(s)	646, 1969, 1998
CviAII	CATG	5 cut(s)	965, 1131, 1211, 1613, 1988
DdeI	CTNAG	5 cut(s)	732, 836, 999, 1093, 1220
DpnI	GATC	9 cut(s)	103, 312, 861, 997, 1038, 1226, 1419, 1548, 1611
DpnII	GATC	9 cut(s)	101, 310, 859, 995, 1036, 1224, 1417, 1546, 1609
DrdI	GACNNNNNNGTC	1 cut(s)	653
DseDI	GACNNNNNNGTC	1 cut(s)	653
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	1016
EarI	CTCTTC	1 cut(s)	1016
Ecl136II	GAGCTC	1 cut(s)	95
Eco130I	CCWWGG	2 cut(s)	702, 964
Eco24I	GRGCYC	1 cut(s)	97
Eco47I	GGWCC	3 cut(s)	646, 1969, 1998
Eco47III	AGCGCT	1 cut(s)	1662
Eco53kI	GAGCTC	1 cut(s)	95
Eco57I	CTGAAG	4 cut(s)	1152, 1340, 1505, 1797
Eco88I	CYCGRG	3 cut(s)	90, 197, 2033
Eco91I	GGTNACC	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	646
EcoO65I	GGTNACC	1 cut(s)	82
EcoRI	GAATTC	2 cut(s)	1204, 1752
EcoRII	CCWGG	4 cut(s)	887, 1708, 1794, 1956
EcoT14I	CCWWGG	2 cut(s)	702, 964
EcoT38I	GRGCYC	1 cut(s)	97
ErhI	CCWWGG	2 cut(s)	702, 964
Esp3I	CGTCTC	1 cut(s)	1262
FaeI	CATG	5 cut(s)	968, 1134, 1214, 1616, 1991
FaqI	GGGAC	2 cut(s)	1937, 1984
FatI	CATG	5 cut(s)	964, 1130, 1210, 1612, 1987
FauNDI	CATATG	1 cut(s)	1578
FbaI	TGATCA	3 cut(s)	310, 1417, 1609
FblI	GTMKAC	2 cut(s)	720, 1759
Fnu4HI	GCNGC	6 cut(s)	216, 379, 1584, 1745, 2006, 2041
FokI	GGATG	5 cut(s)	290, 770, 932, 1319, 2016
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	6 cut(s)	216, 379, 1584, 1745, 2006, 2041
FspBI	CTAG	9 cut(s)	507, 680, 750, 816, 1074, 1200, 1424, 1551, 1904
GlaI	GCGC	5 cut(s)	157, 846, 1662, 1748, 1986
GluI	GCNGC	6 cut(s)	216, 379, 1584, 1745, 2006, 2041
GsaI	CCCAGC	1 cut(s)	2005
GsuI	CTGGAG	3 cut(s)	378, 1376, 1506
HaeII	RGCGCY	3 cut(s)	848, 1664, 1750
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	2 cut(s)	80, 1677
HhaI	GCGC	5 cut(s)	158, 847, 1663, 1749, 1987
Hin1II	CATG	5 cut(s)	968, 1134, 1214, 1616, 1991
Hin6I	GCGC	5 cut(s)	156, 845, 1661, 1747, 1985
HinP1I	GCGC	5 cut(s)	156, 845, 1661, 1747, 1985
HincII	GTYRAC	2 cut(s)	1181, 1760
HindII	GTYRAC	2 cut(s)	1181, 1760
HindIII	AAGCTT	1 cut(s)	1594
HpaII	CCGG	2 cut(s)	80, 1677
HphI	GGTGA	6 cut(s)	76, 560, 578, 803, 869, 1955
Hpy166II	GTNNAC	7 cut(s)	252, 721, 807, 1181, 1349, 1760, 1909
Hpy188III	TCNNGA	7 cut(s)	275, 1222, 1265, 1412, 1485, 1613, 2033
Hpy8I	GTNNAC	7 cut(s)	252, 721, 807, 1181, 1349, 1760, 1909
Hpy99I	CGWCG	1 cut(s)	1761
HpyAV	CCTTC	9 cut(s)	108, 315, 656, 910, 1096, 1467, 1635, 1815, 1879
HpyCH4III	ACNGT	8 cut(s)	178, 695, 1009, 1048, 1279, 1300, 1476, 1973
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 1316, 1501
HpyF3I	CTNAG	5 cut(s)	732, 836, 999, 1093, 1220
Hsp92II	CATG	5 cut(s)	968, 1134, 1214, 1616, 1991
HspAI	GCGC	5 cut(s)	156, 845, 1661, 1747, 1985
Ksp22I	TGATCA	3 cut(s)	310, 1417, 1609
Kzo9I	GATC	9 cut(s)	101, 310, 859, 995, 1036, 1224, 1417, 1546, 1609
LmnI	GCTCC	3 cut(s)	100, 1126, 1148
Lsp1109I	GCAGC	6 cut(s)	202, 390, 1570, 1756, 2017, 2027
LweI	GCATC	5 cut(s)	1131, 1297, 1504, 1830, 1873
MaeI	CTAG	9 cut(s)	507, 680, 750, 816, 1074, 1200, 1424, 1551, 1904
MaeIII	GTNAC	4 cut(s)	82, 323, 980, 1312
MalI	GATC	9 cut(s)	103, 312, 861, 997, 1038, 1226, 1419, 1548, 1611
MboI	GATC	9 cut(s)	101, 310, 859, 995, 1036, 1224, 1417, 1546, 1609
MflI	RGATCY	1 cut(s)	995
MhlI	GDGCHC	4 cut(s)	8, 97, 1677, 1911
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	9 cut(s)	123, 436, 557, 618, 793, 934, 1204, 1260, 1752
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	4 cut(s)	398, 551, 1085, 1373
MmeI	TCCRAC	2 cut(s)	30, 1655
Mox20I	TGGCCA	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	4 cut(s)	261, 1017, 1529, 1836
MslI	CAYNNNNRTG	2 cut(s)	405, 1477
Msp20I	TGGCCA	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	1319
MspI	CCGG	2 cut(s)	80, 1677
MspR9I	CCNGG	5 cut(s)	889, 1677, 1710, 1796, 1958
MvaI	CCWGG	4 cut(s)	889, 1710, 1796, 1958
MvnI	CGCG	1 cut(s)	1985
MwoI	GCNNNNNNNGC	3 cut(s)	179, 1316, 1501
NciI	CCSGG	1 cut(s)	1677
NcoI	CCATGG	1 cut(s)	964
NdeI	CATATG	1 cut(s)	1578
NdeII	GATC	9 cut(s)	101, 310, 859, 995, 1036, 1224, 1417, 1546, 1609
NheI	GCTAGC	1 cut(s)	749
NlaIII	CATG	5 cut(s)	968, 1134, 1214, 1616, 1991
NlaIV	GGNNCC	9 cut(s)	78, 303, 648, 669, 708, 1150, 1242, 1449, 2000
NmuCI	GTSAC	2 cut(s)	82, 323
NspI	RCATGY	1 cut(s)	1991
NspV	TTCGAA	1 cut(s)	138
OliI	CACNNNNGTG	1 cut(s)	1477
PaeI	GCATGC	1 cut(s)	1991
PaeR7I	CTCGAG	2 cut(s)	90, 197
PagI	TCATGA	1 cut(s)	1612
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	6 cut(s)	135, 1107, 1427, 1490, 1616, 1652
PflFI	GACNNNGTC	1 cut(s)	1973
PflMI	CCANNNNNTGG	2 cut(s)	854, 894
PkrI	GCNGC	6 cut(s)	217, 380, 1585, 1746, 2007, 2042
PleI	GAGTC	4 cut(s)	397, 550, 1085, 1373
PpsI	GAGTC	4 cut(s)	397, 550, 1085, 1373
PpuMI	RGGWCCY	1 cut(s)	646
Psp124BI	GAGCTC	1 cut(s)	97
Psp5II	RGGWCCY	1 cut(s)	646
Psp6I	CCWGG	4 cut(s)	887, 1708, 1794, 1956
PspEI	GGTNACC	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	2001
PspGI	CCWGG	4 cut(s)	887, 1708, 1794, 1956
PspN4I	GGNNCC	9 cut(s)	78, 303, 648, 669, 708, 1150, 1242, 1449, 2000
PspPI	GGNCC	3 cut(s)	646, 1969, 1998
PspPPI	RGGWCCY	1 cut(s)	646
PspXI	VCTCGAGB	2 cut(s)	90, 197
PsuI	RGATCY	1 cut(s)	995
PsyI	GACNNNGTC	1 cut(s)	1973
PvuII	CAGCTG	1 cut(s)	1319
RseI	CAYNNNNRTG	2 cut(s)	405, 1477
SacI	GAGCTC	1 cut(s)	97
SalI	GTCGAC	1 cut(s)	1758
SaqAI	TTAA	4 cut(s)	261, 1017, 1529, 1836
SatI	GCNGC	6 cut(s)	216, 379, 1584, 1745, 2006, 2041
Sau3AI	GATC	9 cut(s)	101, 310, 859, 995, 1036, 1224, 1417, 1546, 1609
Sau96I	GGNCC	3 cut(s)	646, 1969, 1998
SchI	GAGTC	4 cut(s)	398, 551, 1085, 1373
ScrFI	CCNGG	5 cut(s)	889, 1677, 1710, 1796, 1958
SduI	GDGCHC	4 cut(s)	8, 97, 1677, 1911
SfaNI	GCATC	5 cut(s)	1131, 1297, 1504, 1830, 1873
SfcI	CTRYAG	1 cut(s)	1701
Sfr274I	CTCGAG	2 cut(s)	90, 197
SfuI	TTCGAA	1 cut(s)	138
SinI	GGWCC	3 cut(s)	646, 1969, 1998
SlaI	CTCGAG	2 cut(s)	90, 197
SmiMI	CAYNNNNRTG	2 cut(s)	405, 1477
SmlI	CTYRAG	3 cut(s)	90, 197, 1410
SmoI	CTYRAG	3 cut(s)	90, 197, 1410
SpeI	ACTAGT	4 cut(s)	506, 679, 1073, 1903
SphI	GCATGC	1 cut(s)	1991
Sse9I	AATT	9 cut(s)	123, 436, 557, 618, 793, 934, 1204, 1260, 1752
SsiI	CCGC	3 cut(s)	1729, 1799, 1983
SspMI	CTAG	9 cut(s)	507, 680, 750, 816, 1074, 1200, 1424, 1551, 1904
SstI	GAGCTC	1 cut(s)	97
StyD4I	CCNGG	5 cut(s)	887, 1675, 1708, 1794, 1956
StyI	CCWWGG	2 cut(s)	702, 964
TaaI	ACNGT	8 cut(s)	178, 695, 1009, 1048, 1279, 1300, 1476, 1973
TaqI	TCGA	8 cut(s)	91, 138, 198, 862, 1569, 1602, 1759, 1867
TaqII	GACCGA	1 cut(s)	1649
TasI	AATT	9 cut(s)	123, 436, 557, 618, 793, 934, 1204, 1260, 1752
TatI	WGTACW	5 cut(s)	251, 534, 806, 1321, 1348
TfiI	GAWTC	6 cut(s)	135, 1107, 1427, 1490, 1616, 1652
Tru1I	TTAA	4 cut(s)	261, 1017, 1529, 1836
Tru9I	TTAA	4 cut(s)	261, 1017, 1529, 1836
TscAI	CASTG	2 cut(s)	297, 1117
TseFI	GTSAC	2 cut(s)	82, 323
TseI	GCWGC	6 cut(s)	215, 378, 1583, 1744, 2005, 2040
Tsp45I	GTSAC	2 cut(s)	82, 323
TspDTI	ATGAA	6 cut(s)	279, 389, 423, 929, 936, 1588
TspRI	CASTG	2 cut(s)	297, 1117
Tth111I	GACNNNGTC	1 cut(s)	1973
Van91I	CCANNNNNTGG	2 cut(s)	854, 894
VneI	GTGCAC	1 cut(s)	1907
VpaK11BI	GGWCC	3 cut(s)	646, 1969, 1998
XapI	RAATTY	4 cut(s)	793, 1204, 1260, 1752
XceI	RCATGY	1 cut(s)	1991
XhoI	CTCGAG	2 cut(s)	90, 197
XmiI	GTMKAC	2 cut(s)	720, 1759
XmnI	GAANNNNTTC	1 cut(s)	335
XspI	CTAG	9 cut(s)	507, 680, 750, 816, 1074, 1200, 1424, 1551, 1904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.