Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002294

Physical Location & Seq

Genomic Coordinates Reverse (-)

7392425 .. 7397993

Gene Structure 5569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1089900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2034 bp

ATGGTGTTGCAGAAGAGGTTGGATTACGGATTCAATGGCTATCAGGTGCCTCCCACTCCTAAAGCTTCTAGATCAGCAAGGAAGCGACGTGTGGTTCGTAAGGTAGTTGAAGACAATGCATTGGGTGCATTTGACTTGTTGGCCACTGTAGCTGGCAAGTTATTGCTCGAGGGAGAGAGTTCTCCCGCTTCTAATCATACATCAATTGGAAAAGATCAATGTGCAGGTAGTAAGGAACATTGCCTGGACGGAGATAAACCATTGAAAGTGGAACCTTGTGATCAAGGCAGCTCCGACAGGATACCTTTGGTATCTGATCATATCTCGCAAGGTCAGAATCTAAGTTCGCGCTCCAAGGCTTCTCCAGTTCATCAGAATGAATGTCATTCTGTTATGACAACTTCTAATTGTTCGGAGAGGTTTGTTTCTGATATGTTGGTGAGTGGAAAATGCAAGAATGAGGTGGTAAGTTTTACTGGCAAATTAGAAGCTGGCTATTCTGGAAACAGGGAGCCTGGTGATTGTAAATTAGATGGTGCAGTTAAAATATTAGTAAATGATGAGACTAAGAGTGGGGAAGTGCTAACTGGTACCGGGGATGGTATGTGCAGTTTAGAGGATCCGGTTGTCTGGGAAGGGGAGCCTCCTCCACTAGCTAGTTCAGATAGTAGCACAAAGGTGCCTATGTATGTAGACCGTATTCCTCAGCGATCTTTCCCCGCTAGCCGGGATGATGTAAATGTAGTTAGTAGAGATGATGACGAAAATTCCTCTGGGTGTACACACCCTAGTACCGCAATGAAGTATTCAAGGCCAGCTCCGTTGCGGATTGGAGACCGAAGAATACGAAAAATATTGGCTTCCAAATATTGGAAAGTAGCTCCAAAGATGAAGGATGAGACACATTCTAATTCCTATCGGGATATGAAACCAAATTACCACAATAGGAAGAATTGCTACAAACGTCAAAGATCTCAAATGAATATGCCTTTCAAGAAAAGGAGGCTTTTTGACCATAGCACGGTTCCAAATCCTGATGAAGGTATTAGTAGAGAGGGATTCTTTGACTTACGTGAGAAGGGAATCAATGCTTCTGCTTCGTGTTCAAAGATGCAAGCCACTGGGACGTCTTCTTCGGTAGCAGGACAGCACTCATCTTTCCAATCAAGAAATTCTCATGTGAAGCTCAGGATCAAGTCGTTCAGGATTCCAGAACTATTTATTGAGATCCCGGAGACGGCAACTGTTGGTTCATTAAAGAAAACAGTTATGGAAGCAGTGACAGCTGTACTTGGAGGTGGATTATGTGTTGGTGTACTTCTTCGAGGAAAGAAAGTGAGAGATGACAATAAAACTTTACTGCAAACAGGAATTTCTCAAGATGACCATCTAGATTCTGTGGGATTTTCCTTGGAAGCCAACCCTTCCCGAAACCCACCTCCTTTATGTTCTGATGATTCTCCCTGTATGCTTCCCTGTGATGAATTAAAGCCTTTAATAAGGTACCAACCGGGTCCTACTAGCAAACCCATACCTGAACCTCATATGGCCAGTTTTGGGGGCTTCATAGAAAGCGATCATGATTCAGCACCCTCTCCAACAGAGATGTCAGCTGAAAAAAGCACAACAGATTCTAAAGCATTGGTTGCTGTTCCAGATATGGGTGTAGATGCACTAGCTGTGGTCCCTGGGAACAGGAAATCAAGGCGGTTTGATATTGGACAGCGCCGAATTCGTCGACCTTTCTCTGTTACGGAGGTGGAAGCGCTTGTCCAAGCGGTTGAGAAACTTGGTACTGGAAGGTGGCGTGATGTTAAACTACGAGCTTTCGACAACGCTAAGCATCGAACATATGTGGATTTAAAGGATAAGTGGAAAACCTTAGTGCACACGGCGAAAATATCTCCTCAACAGAGGCGGGGAGAGCCTGTCCCCCAAGAGCTCTTGGACAGGGTCCTAACAGCTCATGCGTACTGGTCCCAGCAGCAAGCCAAACAACAGCTCAAACAGCCCGAGACTTGCATTCTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008301 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0023052 GO:0031090 GO:0031627 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032200 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0035556 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

678

Amino Acids

74.72

Weight (kDa)

9.06

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_TPR1	PF23603	393 - 461	2.8e-39	Telomere repeat-binding protein 1-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07540 AT3G46590 AT3G46590 AT3G46590 AT3G46590 AT3G46590 AT5G59430 AT5G59430 AT5G59430 AT5G59430 AT5G59430
fragaria_vesca	FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520
malus_domestica	MD03G1089900.v1.1 MD11G1099200.v1.1
prunus_persica	Prupe.6G074100_v2.0.a1 Prupe.6G074100_v2.0.a1
pyrus_communis	pycom03g07150 pycom11g08340
rosa_chinensis	RchiOBHm_Chr5g0065391 RchiOBHm_Chr5g0065401 RchiOBHm_Chr5g0065451
rosa_laevigata	RLG00000035788
rosa_multiflora	Rmu_sc0001010.1_g000092
rosa_roxburghii	Rroxscaffold_1G00015800
rosa_rugosa	Rorug05G0371900 Rorug05G0372000 Rorug05G0372100 Rorug05G0372100
rosa_samantha	Rh5AG429700 Rh5BG444900 Rh5CG467200 Rh5DG457400
rosa_wichuraiana	Rw5G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1130
Acc36I	ACCTGC	1 cut(s)	215
Acc65I	GGTACC	2 cut(s)	590, 1503
AccB1I	GGYRCC	4 cut(s)	46, 590, 679, 1503
AccB7I	CCANNNNNTGG	1 cut(s)	870
AccI	GTMKAC	2 cut(s)	693, 1738
AccII	CGCG	1 cut(s)	349
AciI	CCGC	7 cut(s)	186, 720, 795, 826, 1708, 1778, 1918
AclWI	GGATC	4 cut(s)	614, 627, 1199, 1222
AcoI	YGGCCR	2 cut(s)	141, 1548
AcsI	RAATTY	4 cut(s)	766, 1171, 1371, 1731
AcyI	GRCGYC	1 cut(s)	1127
AfaI	GTAC	8 cut(s)	592, 781, 793, 1290, 1317, 1505, 1795, 1973
AfeI	AGCGCT	1 cut(s)	1767
AfiI	CCNNNNNNNGG	7 cut(s)	726, 870, 1021, 1040, 1237, 1557, 1661
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	6 cut(s)	34, 110, 265, 810, 994, 1107
AjiI	CACGTC	1 cut(s)	89
AjnI	CCWGG	3 cut(s)	243, 514, 1687
AleI	CACNNNNGTG	1 cut(s)	677
Alw21I	GWGCWC	2 cut(s)	1890, 1944
Alw26I	GTCTC	5 cut(s)	557, 828, 893, 1229, 2009
Alw44I	GTGCAC	1 cut(s)	1886
AlwI	GGATC	4 cut(s)	614, 627, 1199, 1222
Ama87I	CYCGRG	2 cut(s)	167, 2012
Aor51HI	AGCGCT	1 cut(s)	1767
AoxI	GGCC	3 cut(s)	141, 812, 1548
ApaLI	GTGCAC	1 cut(s)	1886
ApeKI	GCWGC	2 cut(s)	288, 1984
ApoI	RAATTY	4 cut(s)	766, 1171, 1371, 1731
ArsI	GACNNNNNNTTYG	4 cut(s)	78, 110, 1117, 1149
Asp718I	GGTACC	2 cut(s)	590, 1503
AspLEI	GCGC	3 cut(s)	351, 1728, 1768
AspS9I	GGNCC	4 cut(s)	1514, 1684, 1954, 1977
AsuC2I	CCSGG	4 cut(s)	595, 728, 1232, 1512
AsuHPI	GGTGA	2 cut(s)	451, 530
AsuNHI	GCTAGC	1 cut(s)	722
AvaI	CYCGRG	2 cut(s)	167, 2012
AvaII	GGWCC	4 cut(s)	1514, 1684, 1954, 1977
BaeGI	GKGCMC	1 cut(s)	1890
BaeI	ACNNNNGTAYC	2 cut(s)	775, 808
BalI	TGGCCA	2 cut(s)	143, 1550
BamHI	GGATCC	1 cut(s)	619
BanI	GGYRCC	4 cut(s)	46, 590, 679, 1503
BanII	GRGCYC	1 cut(s)	1944
BarI	GAAGNNNNNNTAC	2 cut(s)	941, 973
BbsI	GAAGAC	2 cut(s)	117, 1122
Bbv12I	GWGCWC	2 cut(s)	1890, 1944
BbvCI	CCTCAGC	1 cut(s)	705
BbvI	GCAGC	2 cut(s)	300, 1996
BccI	CCATC	3 cut(s)	527, 593, 1395
BceAI	ACGGC	2 cut(s)	1254, 1908
BciT130I	CCWGG	3 cut(s)	245, 516, 1689
BciVI	GTATCC	1 cut(s)	294
BclI	TGATCA	2 cut(s)	280, 316
BcnI	CCSGG	4 cut(s)	595, 728, 1232, 1512
BcoDI	GTCTC	5 cut(s)	557, 828, 893, 1229, 2009
BfaI	CTAG	8 cut(s)	69, 653, 657, 723, 789, 1391, 1521, 1676
BfmI	CTRYAG	1 cut(s)	147
BfoI	RGCGCY	2 cut(s)	1729, 1769
BfuAI	ACCTGC	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	294
BglII	AGATCT	1 cut(s)	971
BisI	GCNGC	2 cut(s)	289, 1985
BlpI	GCTNAGC	1 cut(s)	1839
BlsI	GCNGC	2 cut(s)	290, 1986
Bme1390I	CCNGG	7 cut(s)	245, 516, 595, 728, 1232, 1512, 1689
Bme18I	GGWCC	4 cut(s)	1514, 1684, 1954, 1977
BmeT110I	CYCGRG	2 cut(s)	167, 2012
BmgBI	CACGTC	1 cut(s)	89
BmgT120I	GGNCC	4 cut(s)	1514, 1684, 1954, 1977
BmrFI	CCNGG	7 cut(s)	245, 516, 595, 728, 1232, 1512, 1689
BmrI	ACTGGG	1 cut(s)	1131
BmsI	GCATC	3 cut(s)	1101, 1660, 1852
BmtI	GCTAGC	1 cut(s)	726
BmuI	ACTGGG	1 cut(s)	1131
BpiI	GAAGAC	2 cut(s)	117, 1122
BpmI	CTGGAG	1 cut(s)	348
Bpu10I	CCTNAGC	2 cut(s)	705, 1187
Bpu1102I	GCTNAGC	1 cut(s)	1839
BpuEI	CTTGAG	1 cut(s)	1362
BpuMI	CCSGG	4 cut(s)	595, 728, 1232, 1512
BsaAI	YACGTR	1 cut(s)	1073
BsaBI	GATNNNNATC	1 cut(s)	1386
BsaHI	GRCGYC	1 cut(s)	1127
BsaI	GGTCTC	1 cut(s)	828
BsaJI	CCNNGG	5 cut(s)	354, 594, 1410, 1687, 1688
BsaWI	WCCGGW	1 cut(s)	622
BsaXI	ACNNNNNCTCC	2 cut(s)	1914, 1944
Bsc4I	CCNNNNNNNGG	7 cut(s)	726, 870, 1021, 1040, 1237, 1557, 1661
Bse1I	ACTGG	7 cut(s)	365, 481, 592, 1126, 1551, 1801, 1979
Bse3DI	GCAATG	2 cut(s)	238, 804
Bse8I	GATNNNNATC	1 cut(s)	1386
BseBI	CCWGG	3 cut(s)	245, 516, 1689
BseDI	CCNNGG	5 cut(s)	354, 594, 1410, 1687, 1688
BseGI	GGATG	3 cut(s)	604, 736, 901
BseJI	GATNNNNATC	1 cut(s)	1386
BseLI	CCNNNNNNNGG	7 cut(s)	726, 870, 1021, 1040, 1237, 1557, 1661
BseMI	GCAATG	2 cut(s)	238, 804
BseMII	CTCAG	2 cut(s)	719, 1201
BseNI	ACTGG	7 cut(s)	365, 481, 592, 1126, 1551, 1801, 1979
BseRI	GAGGAG	2 cut(s)	636, 1896
BseSI	GKGCMC	1 cut(s)	1890
BseXI	GCAGC	2 cut(s)	300, 1996
BseYI	CCCAGC	1 cut(s)	1980
BsgI	GTGCAG	3 cut(s)	243, 558, 628
Bsh1236I	CGCG	1 cut(s)	349
BshFI	GGCC	3 cut(s)	143, 814, 1550
BshNI	GGYRCC	4 cut(s)	46, 590, 679, 1503
BsiHKAI	GWGCWC	2 cut(s)	1890, 1944
BsiHKCI	CYCGRG	2 cut(s)	167, 2012
BsiSI	CCGG	5 cut(s)	594, 623, 727, 1232, 1511
BslFI	GGGAC	4 cut(s)	1138, 1670, 1916, 1963
BslI	CCNNNNNNNGG	7 cut(s)	726, 870, 1021, 1040, 1237, 1557, 1661
BsmAI	GTCTC	5 cut(s)	557, 828, 893, 1229, 2009
BsmBI	CGTCTC	1 cut(s)	1229
BsmFI	GGGAC	4 cut(s)	1138, 1670, 1916, 1963
BsmI	GAATGC	1 cut(s)	2022
BsnI	GGCC	3 cut(s)	143, 814, 1550
Bso31I	GGTCTC	1 cut(s)	828
BsoBI	CYCGRG	2 cut(s)	167, 2012
Bsp1286I	GDGCHC	2 cut(s)	1890, 1944
Bsp1407I	TGTACA	1 cut(s)	779
Bsp1720I	GCTNAGC	1 cut(s)	1839
BspACI	CCGC	7 cut(s)	186, 720, 795, 826, 1708, 1778, 1918
BspANI	GGCC	3 cut(s)	143, 814, 1550
BspCNI	CTCAG	2 cut(s)	718, 1200
BspFNI	CGCG	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	1579
BspMI	ACCTGC	1 cut(s)	215
BspOI	GCTAGC	1 cut(s)	726
BspPI	GGATC	4 cut(s)	614, 627, 1199, 1222
BspT107I	GGYRCC	4 cut(s)	46, 590, 679, 1503
BspTNI	GGTCTC	1 cut(s)	828
BsrDI	GCAATG	2 cut(s)	238, 804
BsrGI	TGTACA	1 cut(s)	779
BsrI	ACTGG	7 cut(s)	365, 481, 592, 1126, 1551, 1801, 1979
BssECI	CCNNGG	5 cut(s)	354, 594, 1410, 1687, 1688
BssNI	GRCGYC	1 cut(s)	1127
BssT1I	CCWWGG	2 cut(s)	354, 1410
Bst2UI	CCWGG	3 cut(s)	245, 516, 1689
Bst4CI	ACNGT	5 cut(s)	148, 698, 1024, 1246, 1267
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	1 cut(s)	1127
BstAPI	GCANNNNNTGC	2 cut(s)	125, 1646
BstAUI	TGTACA	1 cut(s)	779
BstBAI	YACGTR	1 cut(s)	1073
BstC8I	GCNNGC	6 cut(s)	154, 493, 724, 816, 1116, 1989
BstDEI	CTNAG	6 cut(s)	341, 567, 705, 1187, 1839, 1882
BstENI	CCTNNNNNAGG	1 cut(s)	1038
BstF5I	GGATG	3 cut(s)	604, 736, 901
BstFNI	CGCG	1 cut(s)	349
BstH2I	RGCGCY	2 cut(s)	1729, 1769
BstHHI	GCGC	3 cut(s)	351, 1728, 1768
BstMAI	GTCTC	5 cut(s)	557, 828, 893, 1229, 2009
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 149, 1283, 1646, 1924, 2008
BstNI	CCWGG	3 cut(s)	245, 516, 1689
BstSCI	CCNGG	7 cut(s)	243, 514, 593, 726, 1230, 1510, 1687
BstSFI	CTRYAG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	1890
BstUI	CGCG	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	300, 1996
BstV2I	GAAGAC	2 cut(s)	117, 1122
BstX2I	RGATCY	3 cut(s)	619, 971, 1227
BstYI	RGATCY	3 cut(s)	619, 971, 1227
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	3 cut(s)	143, 814, 1550
BtrI	CACGTC	1 cut(s)	89
BtsCI	GGATG	3 cut(s)	604, 736, 901
BtsI	GCAGTG	1 cut(s)	1284
BtsIMutI	CAGTG	3 cut(s)	144, 1119, 1284
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	6 cut(s)	154, 493, 724, 816, 1116, 1989
CciI	TCATGA	1 cut(s)	1579
CfoI	GCGC	3 cut(s)	351, 1728, 1768
Cfr13I	GGNCC	4 cut(s)	1514, 1684, 1954, 1977
Csp6I	GTAC	8 cut(s)	591, 780, 792, 1289, 1316, 1504, 1794, 1972
CviAII	CATG	3 cut(s)	1178, 1580, 1967
CviQI	GTAC	8 cut(s)	591, 780, 792, 1289, 1316, 1504, 1794, 1972
DdeI	CTNAG	6 cut(s)	341, 567, 705, 1187, 1839, 1882
DraI	TTTAAA	1 cut(s)	1863
EaeI	YGGCCR	2 cut(s)	141, 1548
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	1942
Eco130I	CCWWGG	2 cut(s)	354, 1410
Eco24I	GRGCYC	1 cut(s)	1944
Eco31I	GGTCTC	1 cut(s)	828
Eco47I	GGWCC	4 cut(s)	1514, 1684, 1954, 1977
Eco47III	AGCGCT	1 cut(s)	1767
Eco53kI	GAGCTC	1 cut(s)	1942
Eco88I	CYCGRG	2 cut(s)	167, 2012
EcoICRI	GAGCTC	1 cut(s)	1942
EcoNI	CCTNNNNNAGG	1 cut(s)	1038
EcoO109I	RGGNCCY	2 cut(s)	1514, 1954
EcoRI	GAATTC	1 cut(s)	1731
EcoRII	CCWGG	3 cut(s)	243, 514, 1687
EcoT14I	CCWWGG	2 cut(s)	354, 1410
EcoT22I	ATGCAT	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	1944
ErhI	CCWWGG	2 cut(s)	354, 1410
Esp3I	CGTCTC	1 cut(s)	1229
FaeI	CATG	3 cut(s)	1181, 1583, 1970
FaqI	GGGAC	4 cut(s)	1138, 1670, 1916, 1963
FatI	CATG	3 cut(s)	1177, 1579, 1966
FauI	CCCGC	3 cut(s)	193, 727, 1911
FauNDI	CATATG	2 cut(s)	1545, 1852
FbaI	TGATCA	2 cut(s)	280, 316
FblI	GTMKAC	2 cut(s)	693, 1738
Fnu4HI	GCNGC	2 cut(s)	289, 1985
FokI	GGATG	3 cut(s)	611, 743, 908
FriOI	GRGCYC	1 cut(s)	1944
Fsp4HI	GCNGC	2 cut(s)	289, 1985
FspBI	CTAG	8 cut(s)	69, 653, 657, 723, 789, 1391, 1521, 1676
GlaI	GCGC	3 cut(s)	350, 1727, 1767
GluI	GCNGC	2 cut(s)	289, 1985
GsaI	CCCAGC	1 cut(s)	1984
GsuI	CTGGAG	1 cut(s)	348
HaeII	RGCGCY	2 cut(s)	1729, 1769
HaeIII	GGCC	3 cut(s)	143, 814, 1550
HapII	CCGG	5 cut(s)	594, 623, 727, 1232, 1511
HhaI	GCGC	3 cut(s)	351, 1728, 1768
Hin1I	GRCGYC	1 cut(s)	1127
Hin1II	CATG	3 cut(s)	1181, 1583, 1970
Hin6I	GCGC	3 cut(s)	349, 1726, 1766
HinP1I	GCGC	3 cut(s)	349, 1726, 1766
HincII	GTYRAC	1 cut(s)	1739
HindII	GTYRAC	1 cut(s)	1739
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	9 cut(s)	30, 337, 1059, 1083, 1207, 1394, 1457, 1583, 1631
HpaII	CCGG	5 cut(s)	594, 623, 727, 1232, 1511
HphI	GGTGA	2 cut(s)	451, 530
Hpy166II	GTNNAC	6 cut(s)	694, 780, 782, 1316, 1739, 1888
Hpy188I	TCNGA	9 cut(s)	295, 316, 336, 375, 415, 430, 664, 1453, 2033
Hpy8I	GTNNAC	6 cut(s)	694, 780, 782, 1316, 1739, 1888
Hpy99I	CGWCG	2 cut(s)	90, 1740
HpyAV	CCTTC	6 cut(s)	629, 886, 1034, 1072, 1434, 1794
HpyCH4III	ACNGT	5 cut(s)	148, 698, 1024, 1246, 1267
HpyCH4IV	ACGT	4 cut(s)	88, 964, 1072, 1127
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 149, 1283, 1646, 1924, 2008
HpyF3I	CTNAG	6 cut(s)	341, 567, 705, 1187, 1839, 1882
HpySE526I	ACGT	4 cut(s)	88, 964, 1072, 1127
Hsp92I	GRCGYC	1 cut(s)	1127
Hsp92II	CATG	3 cut(s)	1181, 1583, 1970
HspAI	GCGC	3 cut(s)	349, 1726, 1766
KpnI	GGTACC	2 cut(s)	594, 1507
Ksp22I	TGATCA	2 cut(s)	280, 316
LmnI	GCTCC	6 cut(s)	296, 356, 511, 640, 823, 886
Lsp1109I	GCAGC	2 cut(s)	300, 1996
LweI	GCATC	3 cut(s)	1101, 1660, 1852
MaeI	CTAG	8 cut(s)	69, 653, 657, 723, 789, 1391, 1521, 1676
MaeII	ACGT	4 cut(s)	88, 964, 1072, 1127
MaeIII	GTNAC	2 cut(s)	1279, 1750
MboII	GAAGA	7 cut(s)	25, 122, 852, 961, 1122, 1125, 1313
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	3 cut(s)	619, 971, 1227
MhlI	GDGCHC	2 cut(s)	1890, 1944
MlsI	TGGCCA	2 cut(s)	143, 1550
MluNI	TGGCCA	2 cut(s)	143, 1550
MmeI	TCCRAC	2 cut(s)	318, 1622
Mox20I	TGGCCA	2 cut(s)	143, 1550
Mph1103I	ATGCAT	1 cut(s)	121
MscI	TGGCCA	2 cut(s)	143, 1550
MseI	TTAA	6 cut(s)	543, 1256, 1487, 1496, 1815, 1862
MslI	CAYNNNNRTG	2 cut(s)	375, 677
Msp20I	TGGCCA	2 cut(s)	143, 1550
MspA1I	CMGCKG	2 cut(s)	1286, 1613
MspI	CCGG	5 cut(s)	594, 623, 727, 1232, 1511
MspR9I	CCNGG	7 cut(s)	245, 516, 595, 728, 1232, 1512, 1689
MunI	CAATTG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	2022
MvaI	CCWGG	3 cut(s)	245, 516, 1689
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	6 cut(s)	125, 149, 1283, 1646, 1924, 2008
NciI	CCSGG	4 cut(s)	595, 728, 1232, 1512
NdeI	CATATG	2 cut(s)	1545, 1852
NheI	GCTAGC	1 cut(s)	722
NlaIII	CATG	3 cut(s)	1181, 1583, 1970
NmuCI	GTSAC	1 cut(s)	1279
NsiI	ATGCAT	1 cut(s)	121
OliI	CACNNNNGTG	1 cut(s)	677
PaeR7I	CTCGAG	1 cut(s)	167
PagI	TCATGA	1 cut(s)	1579
PasI	CCCWGGG	1 cut(s)	1688
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PctI	GAATGC	1 cut(s)	2022
PfeI	GAWTC	9 cut(s)	30, 337, 1059, 1083, 1207, 1394, 1457, 1583, 1631
PflFI	GACNNNGTC	1 cut(s)	1952
PflMI	CCANNNNNTGG	1 cut(s)	870
PfoI	TCCNGGA	1 cut(s)	1230
PkrI	GCNGC	2 cut(s)	290, 1986
Ppu21I	YACGTR	1 cut(s)	1073
PpuMI	RGGWCCY	2 cut(s)	1514, 1954
Psp124BI	GAGCTC	1 cut(s)	1944
Psp5II	RGGWCCY	2 cut(s)	1514, 1954
Psp6I	CCWGG	3 cut(s)	243, 514, 1687
PspFI	CCCAGC	1 cut(s)	1980
PspGI	CCWGG	3 cut(s)	243, 514, 1687
PspPI	GGNCC	4 cut(s)	1514, 1684, 1954, 1977
PspPPI	RGGWCCY	2 cut(s)	1514, 1954
PspXI	VCTCGAGB	1 cut(s)	167
PsuI	RGATCY	3 cut(s)	619, 971, 1227
PsyI	GACNNNGTC	1 cut(s)	1952
PvuII	CAGCTG	2 cut(s)	1286, 1613
RsaI	GTAC	8 cut(s)	592, 781, 793, 1290, 1317, 1505, 1795, 1973
RsaNI	GTAC	8 cut(s)	591, 780, 792, 1289, 1316, 1504, 1794, 1972
RseI	CAYNNNNRTG	2 cut(s)	375, 677
SacI	GAGCTC	1 cut(s)	1944
SalI	GTCGAC	1 cut(s)	1737
SaqAI	TTAA	6 cut(s)	543, 1256, 1487, 1496, 1815, 1862
SatI	GCNGC	2 cut(s)	289, 1985
Sau96I	GGNCC	4 cut(s)	1514, 1684, 1954, 1977
ScrFI	CCNGG	7 cut(s)	245, 516, 595, 728, 1232, 1512, 1689
SduI	GDGCHC	2 cut(s)	1890, 1944
SfaNI	GCATC	3 cut(s)	1101, 1660, 1852
SfcI	CTRYAG	1 cut(s)	147
Sfr274I	CTCGAG	1 cut(s)	167
SinI	GGWCC	4 cut(s)	1514, 1684, 1954, 1977
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	2 cut(s)	375, 677
SmlI	CTYRAG	2 cut(s)	167, 1377
SmoI	CTYRAG	2 cut(s)	167, 1377
SsiI	CCGC	7 cut(s)	186, 720, 795, 826, 1708, 1778, 1918
SspI	AATATT	3 cut(s)	549, 855, 869
SspMI	CTAG	8 cut(s)	69, 653, 657, 723, 789, 1391, 1521, 1676
SstI	GAGCTC	1 cut(s)	1944
StyD4I	CCNGG	7 cut(s)	243, 514, 593, 726, 1230, 1510, 1687
StyI	CCWWGG	2 cut(s)	354, 1410
TaaI	ACNGT	5 cut(s)	148, 698, 1024, 1246, 1267
TaiI	ACGT	4 cut(s)	91, 967, 1075, 1130
TaqI	TCGA	5 cut(s)	168, 1324, 1738, 1830, 1846
TaqII	GACCGA	1 cut(s)	852
TatI	WGTACW	3 cut(s)	779, 1288, 1315
TfiI	GAWTC	9 cut(s)	30, 337, 1059, 1083, 1207, 1394, 1457, 1583, 1631
Tru1I	TTAA	6 cut(s)	543, 1256, 1487, 1496, 1815, 1862
Tru9I	TTAA	6 cut(s)	543, 1256, 1487, 1496, 1815, 1862
TscAI	CASTG	3 cut(s)	151, 1126, 1284
TseFI	GTSAC	1 cut(s)	1279
TseI	GCWGC	2 cut(s)	288, 1984
Tsp45I	GTSAC	1 cut(s)	1279
TspGWI	ACGGA	4 cut(s)	42, 264, 810, 1769
TspRI	CASTG	3 cut(s)	151, 1126, 1284
Tth111I	GACNNNGTC	1 cut(s)	1952
Van91I	CCANNNNNTGG	1 cut(s)	870
VneI	GTGCAC	1 cut(s)	1886
VpaK11BI	GGWCC	4 cut(s)	1514, 1684, 1954, 1977
XagI	CCTNNNNNAGG	1 cut(s)	1038
XapI	RAATTY	4 cut(s)	766, 1171, 1371, 1731
XbaI	TCTAGA	2 cut(s)	68, 1390
XhoI	CTCGAG	1 cut(s)	167
XmiI	GTMKAC	2 cut(s)	693, 1738
XspI	CTAG	8 cut(s)	69, 653, 657, 723, 789, 1391, 1521, 1676
ZraI	GACGTC	1 cut(s)	1128
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.