Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002294

Physical Location & Seq

Genomic Coordinates Forward (+)

72735861 .. 72743899

Gene Structure 8039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG457400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1860 bp

ATGGTGTTGCAGAAGAGGTTGGATTATGGATTCAATGGCTTTCAGGTGCCGGTCACTCCTCGAGCTCCGAGATCAGCGAGGAGAAGGAGTACAATTAGCAAGAGAATTGAAGACAGTTCAATGGGCGCATTTGACTTATTGGCCACCGTAGCTGGCAAGTTATTGCTTGAGGGAGAGAGTTCTCCTGCTTCCAGTCATACATCGTCTGGAAAAGAAAAGTGTTCAATCATTAATGACAGTTGTCTGAATGGAGACAAGCCATTGAAAGTGGAACCTTGTGATCAAGGTAGCTGTGACAGGAAATTCTTTGTGTCTGATAATATCTCACAGGGTCATAATCAAAGTTGCAGCTCAAAGGAGTCTCCAGTTCATCAGAATGAAAGCCATTCTGTAATGACAACTTCTAATTGCTCGGAGAGGTTTGTTTCTGATATGTTGGTGGGTGGAAAATGTAAGAATGAAATAGGAAGTTTTACTAGCAAAGTACAGGCAGGCTCCTCAGTGTACAGGGAGTCTGGTGAATGTAAATTAGATGGTGAAGCTAAAGTAATAGTAAAAGATGAGACTAATAAGAGGGGGGAGGTGCTAATTGGTACTGGGGCTGATATGTGCAGTTTAGAGGACCCTATGGTCTGGGAAGGGGAACCTCCCGCACTAGTCAGTTCAGATAGTAGTACCAAGGTGCCTATTTGTGTAGACCATATCCCTCAGAAACCTATCCTTGCTAGCAGGGATGATGTAAAAATAGTTAGTAGAGATGATGACGAAAATTCCTCTGGGTGTACTCACCCTAGTACCACCACAAGGTATCTAAGGACCGCACAGCGGATTGGTGACCGAAGAATAAGGAAAGTATTGGCTTCGAGGTATTGGAAAGCAGCTCCAAAGATGAAGGATGGGGCACATTCTAATTCTTATAGGGATATGCGACCAATTTACCATGGCAGGAAGAATGGTTACAAACGCCAGAGATCTCAGATGAATATGCCTTTTAAGAAGAGGAGGCTTTTTGACCGTAGCACAGTTCTAAAATCCAATGGAGGTATTAGTAGTGAGAGCTTCTTTGACTCAGCCAATGCGATATCTTCTTCAGTAGCAGGTCAACATTCAGTTTTCCAATCTAGGAATTCTCATGTGAAGCTCAGGATCAAGTCCTTCAGGGTGCCAGAACTATTCATTGAAATTCCAGAGACTGCAACCGTTGGTTCATTGAAGAAGACTGTTATGGATGCAGTAACAGCTGTACTTGGCGGTGGATTGTGTGTTGGTGTCCTTCTTCAGGGAAAGAAATTAAGAGATGACACTAAAACTCTACAACAGACAGGAATTTCTCAAGATGACCAGCTAGATTCTTTGGGATTTACTTTGGAACCTAACCCTCCGCACACTCCCACACCGCTATGTTCTGGAGATTCTCCCCGTATGCTTCCTTGCGACGTACTTCAGCCTTTAACAAGGTATGCACCTGATCCTAGTAGTGAAGCCTCACTCGAGCCTCATATGGCTGCTTTAGGAAGCTTCATCGAAAGTGATCATGATTCAGCACCCTCTCCAACCGATACGTCCGCTGACAAAAGCACGACAGATTCTAAAGCTCTGGTTGTTGTGCCAGAAATGAGTGCAGAGGCACTAGCTGTAGTTCCTGGGAACAGGAAATCAAAGCGGTTTGATATTGGGCAGCGCCGAATTCGTCGACCCTTCTCTGTTGCTGAAGTGGAAGCACTTGTTCAGGCAGTTGAGAAACTTGGTACTGGAAGATGGCGTGATGTGAAGATGCGAGCTTTTGAAAATGCCAAGCATCGAACTTATGTGGATTTGAAGGTGAGGCTTATTATTTTCCTGGTTCCTAGTAGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008301 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0023052 GO:0031090 GO:0031627 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032200 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0035556 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

619

Amino Acids

67.94

Weight (kDa)

9.12

Isoelectric Point (pI)

54.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_TPR1	PF23603	378 - 446	1.2e-38	Telomere repeat-binding protein 1-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07540 AT3G46590 AT3G46590 AT3G46590 AT3G46590 AT3G46590 AT5G59430 AT5G59430 AT5G59430 AT5G59430 AT5G59430
fragaria_vesca	FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520
malus_domestica	MD03G1089900.v1.1 MD11G1099200.v1.1
prunus_persica	Prupe.6G074100_v2.0.a1 Prupe.6G074100_v2.0.a1
pyrus_communis	pycom03g07150 pycom11g08340
rosa_chinensis	RchiOBHm_Chr5g0065391 RchiOBHm_Chr5g0065401 RchiOBHm_Chr5g0065451
rosa_laevigata	RLG00000035788
rosa_multiflora	Rmu_sc0001010.1_g000092
rosa_roxburghii	Rroxscaffold_1G00015800
rosa_rugosa	Rorug05G0371900 Rorug05G0372000 Rorug05G0372100 Rorug05G0372100
rosa_samantha	Rh5AG429700 Rh5BG444900 Rh5CG467200 Rh5DG457400
rosa_wichuraiana	Rw5G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	629
Acc36I	ACCTGC	1 cut(s)	1088
AccB1I	GGYRCC	3 cut(s)	46, 682, 1162
AccI	GTMKAC	2 cut(s)	696, 1693
AciI	CCGC	8 cut(s)	651, 819, 826, 1251, 1382, 1397, 1566, 1663
AclWI	GGATC	2 cut(s)	1154, 1463
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	6 cut(s)	302, 769, 1126, 1182, 1326, 1686
AcuI	CTGAAG	5 cut(s)	1074, 1141, 1262, 1427, 1731
AfiI	CCNNNNNNNGG	3 cut(s)	804, 825, 1279
AgsI	TTSAA	9 cut(s)	34, 110, 120, 225, 265, 1181, 1213, 1787, 1819
AhlI	ACTAGT	1 cut(s)	655
AjnI	CCWGG	2 cut(s)	1642, 1839
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	4 cut(s)	246, 366, 557, 1184
AlwI	GGATC	2 cut(s)	1154, 1463
AlwNI	CAGNNNCTG	1 cut(s)	1193
Ama87I	CYCGRG	2 cut(s)	60, 1490
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	4 cut(s)	348, 878, 1505, 1678
ApoI	RAATTY	6 cut(s)	302, 769, 1126, 1182, 1326, 1686
AseI	ATTAAT	1 cut(s)	231
AspLEI	GCGC	2 cut(s)	128, 1683
AspS9I	GGNCC	2 cut(s)	622, 816
AsuHPI	GGTGA	5 cut(s)	530, 548, 779, 845, 1834
AsuNHI	GCTAGC	1 cut(s)	725
AvaI	CYCGRG	2 cut(s)	60, 1490
AvaII	GGWCC	2 cut(s)	622, 816
BaeGI	GKGCMC	1 cut(s)	904
BaeI	ACNNNNGTAYC	2 cut(s)	778, 811
BalI	TGGCCA	1 cut(s)	143
BanI	GGYRCC	3 cut(s)	46, 682, 1162
BanII	GRGCYC	1 cut(s)	67
BarI	GAAGNNNNNNTAC	2 cut(s)	941, 973
BbsI	GAAGAC	2 cut(s)	117, 1223
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	360, 890, 1492, 1690
BccI	CCATC	3 cut(s)	527, 890, 1752
BciT130I	CCWGG	2 cut(s)	1644, 1841
BclI	TGATCA	2 cut(s)	280, 1531
BcoDI	GTCTC	4 cut(s)	246, 366, 557, 1184
BcuI	ACTAGT	1 cut(s)	655
BfaI	CTAG	9 cut(s)	477, 656, 726, 792, 1122, 1346, 1473, 1631, 1848
BfmI	CTRYAG	1 cut(s)	1635
BfoI	RGCGCY	1 cut(s)	1684
BfuAI	ACCTGC	1 cut(s)	1088
BglII	AGATCT	1 cut(s)	971
BisI	GCNGC	4 cut(s)	349, 879, 1506, 1679
BlsI	GCNGC	4 cut(s)	350, 880, 1507, 1680
Bme1390I	CCNGG	2 cut(s)	1644, 1841
Bme18I	GGWCC	2 cut(s)	622, 816
BmeT110I	CYCGRG	2 cut(s)	60, 1490
BmgT120I	GGNCC	2 cut(s)	622, 816
BmiI	GGNNCC	9 cut(s)	48, 273, 496, 624, 645, 684, 1164, 1371, 1845
BmrFI	CCNGG	2 cut(s)	1644, 1841
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	3 cut(s)	1219, 1764, 1807
BmtI	GCTAGC	1 cut(s)	729
BmuI	ACTGGG	1 cut(s)	606
BoxI	GACNNNNGTC	1 cut(s)	240
BpiI	GAAGAC	2 cut(s)	117, 1223
BpmI	CTGGAG	2 cut(s)	348, 1428
Bpu10I	CCTNAGC	1 cut(s)	1142
BpuEI	CTTGAG	2 cut(s)	188, 1317
BsaJI	CCNNGG	3 cut(s)	678, 940, 1643
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	3 cut(s)	804, 825, 1279
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	4 cut(s)	192, 365, 601, 1756
BseBI	CCWGG	2 cut(s)	1644, 1841
BseDI	CCNNGG	3 cut(s)	678, 940, 1643
BseGI	GGATG	3 cut(s)	739, 901, 1234
BseLI	CCNNNNNNNGG	3 cut(s)	804, 825, 1279
BseMII	CTCAG	5 cut(s)	513, 722, 989, 1083, 1156
BseNI	ACTGG	4 cut(s)	192, 365, 601, 1756
BseRI	GAGGAG	4 cut(s)	48, 94, 487, 1015
BseSI	GKGCMC	1 cut(s)	904
BseXI	GCAGC	4 cut(s)	360, 890, 1492, 1690
BsgI	GTGCAG	2 cut(s)	631, 1641
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	3 cut(s)	46, 682, 1162
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	2 cut(s)	60, 1490
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	3 cut(s)	804, 825, 1279
BsmAI	GTCTC	4 cut(s)	246, 366, 557, 1184
BsnI	GGCC	1 cut(s)	143
BsoBI	CYCGRG	2 cut(s)	60, 1490
Bsp1286I	GDGCHC	2 cut(s)	67, 904
Bsp1407I	TGTACA	1 cut(s)	504
Bsp143I	GATC	6 cut(s)	71, 280, 971, 1146, 1468, 1531
Bsp19I	CCATGG	1 cut(s)	940
BspACI	CCGC	8 cut(s)	651, 819, 826, 1251, 1382, 1397, 1566, 1663
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	5 cut(s)	512, 721, 988, 1082, 1155
BspHI	TCATGA	1 cut(s)	1534
BspLI	GGNNCC	9 cut(s)	48, 273, 496, 624, 645, 684, 1164, 1371, 1845
BspMI	ACCTGC	1 cut(s)	1088
BspOI	GCTAGC	1 cut(s)	729
BspPI	GGATC	2 cut(s)	1154, 1463
BspT107I	GGYRCC	3 cut(s)	46, 682, 1162
BsrFI	RCCGGY	1 cut(s)	49
BsrGI	TGTACA	1 cut(s)	504
BsrI	ACTGG	4 cut(s)	192, 365, 601, 1756
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	3 cut(s)	678, 940, 1643
BssMI	GATC	6 cut(s)	71, 280, 971, 1146, 1468, 1531
BssT1I	CCWWGG	2 cut(s)	678, 940
Bst2UI	CCWGG	2 cut(s)	1644, 1841
Bst4CI	ACNGT	7 cut(s)	116, 148, 239, 1016, 1024, 1201, 1222
Bst6I	CTCTTC	2 cut(s)	8, 992
BstAUI	TGTACA	1 cut(s)	504
BstC8I	GCNNGC	4 cut(s)	154, 493, 727, 1779
BstDEI	CTNAG	6 cut(s)	499, 708, 812, 975, 1069, 1142
BstDSI	CCRYGG	1 cut(s)	940
BstEII	GGTNACC	1 cut(s)	833
BstENI	CCTNNNNNAGG	1 cut(s)	1277
BstF5I	GGATG	3 cut(s)	739, 901, 1234
BstH2I	RGCGCY	1 cut(s)	1684
BstHHI	GCGC	2 cut(s)	128, 1683
BstKTI	GATC	6 cut(s)	74, 283, 974, 1149, 1471, 1534
BstMAI	GTCTC	4 cut(s)	246, 366, 557, 1184
BstMBI	GATC	6 cut(s)	71, 280, 971, 1146, 1468, 1531
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 1238
BstNI	CCWGG	2 cut(s)	1644, 1841
BstPAI	GACNNNNGTC	1 cut(s)	240
BstPI	GGTNACC	1 cut(s)	833
BstSCI	CCNGG	2 cut(s)	1642, 1839
BstSFI	CTRYAG	1 cut(s)	1635
BstSLI	GKGCMC	1 cut(s)	904
BstV1I	GCAGC	4 cut(s)	360, 890, 1492, 1690
BstV2I	GAAGAC	2 cut(s)	117, 1223
BstX2I	RGATCY	1 cut(s)	971
BstYI	RGATCY	1 cut(s)	971
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	1 cut(s)	940
BtsCI	GGATG	3 cut(s)	739, 901, 1234
BtsIMutI	CAGTG	1 cut(s)	507
BveI	ACCTGC	1 cut(s)	1088
Cac8I	GCNNGC	4 cut(s)	154, 493, 727, 1779
CaiI	CAGNNNCTG	1 cut(s)	1193
CciI	TCATGA	1 cut(s)	1534
CfoI	GCGC	2 cut(s)	128, 1683
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	622, 816
CviAII	CATG	3 cut(s)	941, 1133, 1535
DdeI	CTNAG	6 cut(s)	499, 708, 812, 975, 1069, 1142
DpnI	GATC	6 cut(s)	73, 282, 973, 1148, 1470, 1533
DpnII	GATC	6 cut(s)	71, 280, 971, 1146, 1468, 1531
DrdI	GACNNNNNNGTC	1 cut(s)	629
DseDI	GACNNNNNNGTC	1 cut(s)	629
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	8, 992
EarI	CTCTTC	2 cut(s)	8, 992
Ecl136II	GAGCTC	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	678, 940
Eco24I	GRGCYC	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	1083
Eco47I	GGWCC	2 cut(s)	622, 816
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	5 cut(s)	1074, 1141, 1262, 1427, 1731
Eco88I	CYCGRG	2 cut(s)	60, 1490
Eco91I	GGTNACC	1 cut(s)	833
EcoICRI	GAGCTC	1 cut(s)	65
EcoNI	CCTNNNNNAGG	1 cut(s)	1277
EcoO109I	RGGNCCY	1 cut(s)	622
EcoO65I	GGTNACC	1 cut(s)	833
EcoRI	GAATTC	2 cut(s)	1126, 1686
EcoRII	CCWGG	2 cut(s)	1642, 1839
EcoRV	GATATC	1 cut(s)	1083
EcoT14I	CCWWGG	2 cut(s)	678, 940
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	2 cut(s)	678, 940
FaeI	CATG	3 cut(s)	944, 1136, 1538
FatI	CATG	3 cut(s)	940, 1132, 1534
FauI	CCCGC	1 cut(s)	658
FauNDI	CATATG	1 cut(s)	1500
FbaI	TGATCA	2 cut(s)	280, 1531
FblI	GTMKAC	2 cut(s)	696, 1693
Fnu4HI	GCNGC	4 cut(s)	349, 879, 1506, 1679
FokI	GGATG	3 cut(s)	746, 908, 1241
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	4 cut(s)	349, 879, 1506, 1679
FspBI	CTAG	9 cut(s)	477, 656, 726, 792, 1122, 1346, 1473, 1631, 1848
GlaI	GCGC	2 cut(s)	127, 1682
GluI	GCNGC	4 cut(s)	349, 879, 1506, 1679
GsuI	CTGGAG	2 cut(s)	348, 1428
HaeII	RGCGCY	1 cut(s)	1684
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	50
HhaI	GCGC	2 cut(s)	128, 1683
Hin1II	CATG	3 cut(s)	944, 1136, 1538
Hin6I	GCGC	2 cut(s)	126, 1681
HinP1I	GCGC	2 cut(s)	126, 1681
HincII	GTYRAC	2 cut(s)	1103, 1694
HindII	GTYRAC	2 cut(s)	1103, 1694
HindIII	AAGCTT	1 cut(s)	1516
HinfI	GANTC	8 cut(s)	30, 359, 512, 1067, 1349, 1412, 1538, 1586
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	5 cut(s)	530, 548, 779, 845, 1834
Hpy166II	GTNNAC	5 cut(s)	505, 697, 783, 1103, 1694
Hpy188I	TCNGA	9 cut(s)	69, 246, 316, 375, 415, 430, 667, 711, 978
Hpy188III	TCNNGA	6 cut(s)	207, 1144, 1187, 1334, 1407, 1535
Hpy8I	GTNNAC	5 cut(s)	505, 697, 783, 1103, 1694
Hpy99I	CGWCG	2 cut(s)	1439, 1695
HpyAV	CCTTC	7 cut(s)	78, 632, 886, 1165, 1283, 1708, 1813
HpyCH4III	ACNGT	7 cut(s)	116, 148, 239, 1016, 1024, 1201, 1222
HpyCH4IV	ACGT	2 cut(s)	1437, 1562
HpyCH4V	TGCA	7 cut(s)	10, 348, 612, 1196, 1232, 1463, 1622
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 1238
HpyF3I	CTNAG	6 cut(s)	499, 708, 812, 975, 1069, 1142
HpySE526I	ACGT	2 cut(s)	1437, 1562
Hsp92II	CATG	3 cut(s)	944, 1136, 1538
HspAI	GCGC	2 cut(s)	126, 1681
Ksp22I	TGATCA	2 cut(s)	280, 1531
Kzo9I	GATC	6 cut(s)	71, 280, 971, 1146, 1468, 1531
LmnI	GCTCC	3 cut(s)	70, 500, 886
Lsp1109I	GCAGC	4 cut(s)	360, 890, 1492, 1690
LweI	GCATC	3 cut(s)	1219, 1764, 1807
MaeI	CTAG	9 cut(s)	477, 656, 726, 792, 1122, 1346, 1473, 1631, 1848
MaeII	ACGT	2 cut(s)	1437, 1562
MaeIII	GTNAC	5 cut(s)	52, 293, 833, 956, 1234
MalI	GATC	6 cut(s)	73, 282, 973, 1148, 1470, 1533
MboI	GATC	6 cut(s)	71, 280, 971, 1146, 1468, 1531
MflI	RGATCY	1 cut(s)	971
MhlI	GDGCHC	2 cut(s)	67, 904
MlsI	TGGCCA	1 cut(s)	143
MluNI	TGGCCA	1 cut(s)	143
MlyI	GAGTC	3 cut(s)	368, 521, 1061
MmeI	TCCRAC	1 cut(s)	1577
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	4 cut(s)	231, 993, 1292, 1451
MslI	CAYNNNNRTG	2 cut(s)	375, 1399
Msp20I	TGGCCA	1 cut(s)	143
MspA1I	CMGCKG	3 cut(s)	826, 1241, 1568
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	1644, 1841
MvaI	CCWGG	2 cut(s)	1644, 1841
MwoI	GCNNNNNNNGC	2 cut(s)	149, 1238
NcoI	CCATGG	1 cut(s)	940
NdeI	CATATG	1 cut(s)	1500
NdeII	GATC	6 cut(s)	71, 280, 971, 1146, 1468, 1531
NheI	GCTAGC	1 cut(s)	725
NlaIII	CATG	3 cut(s)	944, 1136, 1538
NlaIV	GGNNCC	9 cut(s)	48, 273, 496, 624, 645, 684, 1164, 1371, 1845
NmuCI	GTSAC	3 cut(s)	52, 293, 833
PaeR7I	CTCGAG	2 cut(s)	60, 1490
PagI	TCATGA	1 cut(s)	1534
PfeI	GAWTC	5 cut(s)	30, 1349, 1412, 1538, 1586
PkrI	GCNGC	4 cut(s)	350, 880, 1507, 1680
PleI	GAGTC	3 cut(s)	367, 520, 1061
PpsI	GAGTC	3 cut(s)	367, 520, 1061
PpuMI	RGGWCCY	1 cut(s)	622
PshAI	GACNNNNGTC	1 cut(s)	240
PshBI	ATTAAT	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	622
Psp6I	CCWGG	2 cut(s)	1642, 1839
PspEI	GGTNACC	1 cut(s)	833
PspGI	CCWGG	2 cut(s)	1642, 1839
PspN4I	GGNNCC	9 cut(s)	48, 273, 496, 624, 645, 684, 1164, 1371, 1845
PspPI	GGNCC	2 cut(s)	622, 816
PspPPI	RGGWCCY	1 cut(s)	622
PspXI	VCTCGAGB	2 cut(s)	60, 1490
PstNI	CAGNNNCTG	1 cut(s)	1193
PsuI	RGATCY	1 cut(s)	971
PvuII	CAGCTG	1 cut(s)	1241
RseI	CAYNNNNRTG	2 cut(s)	375, 1399
SacI	GAGCTC	1 cut(s)	67
SalI	GTCGAC	1 cut(s)	1692
SaqAI	TTAA	4 cut(s)	231, 993, 1292, 1451
SatI	GCNGC	4 cut(s)	349, 879, 1506, 1679
Sau3AI	GATC	6 cut(s)	71, 280, 971, 1146, 1468, 1531
Sau96I	GGNCC	2 cut(s)	622, 816
SchI	GAGTC	3 cut(s)	368, 521, 1061
ScrFI	CCNGG	2 cut(s)	1644, 1841
SduI	GDGCHC	2 cut(s)	67, 904
SfaNI	GCATC	3 cut(s)	1219, 1764, 1807
SfcI	CTRYAG	1 cut(s)	1635
Sfr274I	CTCGAG	2 cut(s)	60, 1490
SinI	GGWCC	2 cut(s)	622, 816
SlaI	CTCGAG	2 cut(s)	60, 1490
SmiMI	CAYNNNNRTG	2 cut(s)	375, 1399
SmlI	CTYRAG	4 cut(s)	60, 167, 1332, 1490
SmoI	CTYRAG	4 cut(s)	60, 167, 1332, 1490
SpeI	ACTAGT	1 cut(s)	655
SsiI	CCGC	8 cut(s)	651, 819, 826, 1251, 1382, 1397, 1566, 1663
SspMI	CTAG	9 cut(s)	477, 656, 726, 792, 1122, 1346, 1473, 1631, 1848
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	1642, 1839
StyI	CCWWGG	2 cut(s)	678, 940
TaaI	ACNGT	7 cut(s)	116, 148, 239, 1016, 1024, 1201, 1222
TaiI	ACGT	2 cut(s)	1440, 1565
TaqI	TCGA	6 cut(s)	61, 863, 1491, 1524, 1693, 1801
TaqII	GACCGA	1 cut(s)	852
TatI	WGTACW	5 cut(s)	89, 484, 504, 782, 1243
TfiI	GAWTC	5 cut(s)	30, 1349, 1412, 1538, 1586
Tru1I	TTAA	4 cut(s)	231, 993, 1292, 1451
Tru9I	TTAA	4 cut(s)	231, 993, 1292, 1451
TscAI	CASTG	1 cut(s)	507
TseFI	GTSAC	3 cut(s)	52, 293, 833
TseI	GCWGC	4 cut(s)	348, 878, 1505, 1678
Tsp45I	GTSAC	3 cut(s)	52, 293, 833
TspDTI	ATGAA	8 cut(s)	359, 393, 474, 905, 995, 1165, 1197, 1510
TspRI	CASTG	1 cut(s)	507
VpaK11BI	GGWCC	2 cut(s)	622, 816
VspI	ATTAAT	1 cut(s)	231
XagI	CCTNNNNNAGG	1 cut(s)	1277
XapI	RAATTY	6 cut(s)	302, 769, 1126, 1182, 1326, 1686
XhoI	CTCGAG	2 cut(s)	60, 1490
XmiI	GTMKAC	2 cut(s)	696, 1693
XspI	CTAG	9 cut(s)	477, 656, 726, 792, 1122, 1346, 1473, 1631, 1848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.