Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002294

Physical Location & Seq

Genomic Coordinates Forward (+)

50141119 .. 50160798

Gene Structure 19680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0372100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAGCAACAAGGTGGTCTGCGTCACGGGTGCCTCCGGCTACATTGCTTCATGGCTCGTCAAGCTCCTCCTGCAACGCGGCTACACTGTCAAGGCCTCTGTTCGCAACCCAAATGATCCAACAAAGACAGAGCACTTGCTCGCACTTGATGGAGCTAAGGAGAGACTTCAACTTTTCAAAGCAGATCTATTAGAAGAAGGTTCTTTTGACTCTGTTGTTGAGGGCTGTGAGGGTGTTTTCCACACTGCATCTCCCTTTTATCATGACGTCACAGACCCAAAGGCAGAACTACTTGATCCTGCAGTAAAGGGAACACTTAATGTTCTTAACTCGTGTTCGAAATCCCCATCTATCAAACGGGTGGTTTTAACATCTTCTATAGCCGCAGTTGCATATAATGGAAAGCCTCGAACTCCTGATGTAGTGGTTGATGAGACTTGGTTTACTGATCCAGATGTCTGTAAGGAATCAAAGCTATGGTATGTGCTTTCAAAGACTTTGGCGGAGGAGGCTGCCTGGAAACTTGTAAAGGAGAAGGGAATTGACATGGTTACTATTAATCCTGCAATGGTGATTGGTCCTCTGTTACAGCCAACGCTAAATACAAGTGCTGCTGCAATTCTGAATATTATTAAGGGAGCTCGAACATATCCGAATGCAAGTTTTGGATGGATTAATGTCAAAGATGTTGCCAATGCACATGTTCAAGCGTTTGAGATTCCTTCAGCTAGTGGAAGATATTGTTTAGTCGAGAGAGTTGCACACTTTACTGAAGTTCTGCAGATTATACATGAGCTGTACCCTGATTTGCAACTTCCAGAGAAATGTTCGGATGATAAACCTTTCGTGCCAACATATCAGGTGTCCAAAGAAAAGGCAAAGAGCTTGGGTATTGAGTTTATTCCATTAGACATTAGCCTCAAGGAAACAATTGAAAGCTTGAAGGAAAAGAGTTTTGTCAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008301 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0023052 GO:0031090 GO:0031627 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032200 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0035556 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

35.43

Weight (kDa)

5.93

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	3 - 101	6.6e-10	NmrA-like family
Epimerase	PF01370	6 - 243	2.2e-23	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	8 - 237	2.3e-16	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	8 - 202	4.8e-13	Male sterility protein
GDP_Man_Dehyd	PF16363	8 - 242	2.3e-11	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	10 - 190	2.3e-11	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07540 AT3G46590 AT3G46590 AT3G46590 AT3G46590 AT3G46590 AT5G59430 AT5G59430 AT5G59430 AT5G59430 AT5G59430
fragaria_vesca	FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520
malus_domestica	MD03G1089900.v1.1 MD11G1099200.v1.1
prunus_persica	Prupe.6G074100_v2.0.a1 Prupe.6G074100_v2.0.a1
pyrus_communis	pycom03g07150 pycom11g08340
rosa_chinensis	RchiOBHm_Chr5g0065391 RchiOBHm_Chr5g0065401 RchiOBHm_Chr5g0065451
rosa_laevigata	RLG00000035788
rosa_multiflora	Rmu_sc0001010.1_g000092
rosa_roxburghii	Rroxscaffold_1G00015800
rosa_rugosa	Rorug05G0371900 Rorug05G0372000 Rorug05G0372100 Rorug05G0372100
rosa_samantha	Rh5AG429700 Rh5BG444900 Rh5CG467200 Rh5DG457400
rosa_wichuraiana	Rw5G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	29
AccII	CGCG	1 cut(s)	78
AciI	CCGC	3 cut(s)	78, 384, 503
AclWI	GGATC	3 cut(s)	110, 290, 443
AcuI	CTGAAG	2 cut(s)	708, 792
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	1 cut(s)	800
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	6 cut(s)	170, 178, 492, 707, 935, 943
AjnI	CCWGG	1 cut(s)	515
AluBI	AGCT	9 cut(s)	64, 155, 475, 641, 728, 796, 885, 939, 963
AluI	AGCT	9 cut(s)	64, 155, 475, 641, 728, 796, 885, 939, 963
Alw21I	GWGCWC	2 cut(s)	135, 643
Alw26I	GTCTC	2 cut(s)	157, 428
AlwI	GGATC	3 cut(s)	110, 290, 443
AlwNI	CAGNNNCTG	1 cut(s)	966
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	3 cut(s)	512, 611, 614
AseI	ATTAAT	2 cut(s)	558, 675
AspS9I	GGNCC	1 cut(s)	578
AsuHPI	GGTGA	1 cut(s)	583
AsuII	TTCGAA	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	578
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	643
BauI	CACGAG	1 cut(s)	331
Bbv12I	GWGCWC	2 cut(s)	135, 643
BbvI	GCAGC	3 cut(s)	499, 598, 601
BccI	CCATC	3 cut(s)	143, 355, 663
BcgI	CGANNNNNNTGC	2 cut(s)	740, 774
BciT130I	CCWGG	1 cut(s)	517
BcoDI	GTCTC	2 cut(s)	157, 428
BfaI	CTAG	1 cut(s)	729
BfmI	CTRYAG	3 cut(s)	300, 378, 779
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	5 cut(s)	79, 384, 513, 612, 615
BlsI	GCNGC	5 cut(s)	80, 385, 514, 613, 616
Bme1390I	CCNGG	1 cut(s)	517
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	517
BmsI	GCATC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	905
BsaHI	GRCGYC	1 cut(s)	267
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bse3DI	GCAATG	2 cut(s)	42, 573
BseBI	CCWGG	1 cut(s)	517
BseGI	GGATG	2 cut(s)	674, 838
BseMI	GCAATG	2 cut(s)	42, 573
BseRI	GAGGAG	2 cut(s)	56, 521
BseXI	GCAGC	3 cut(s)	499, 598, 601
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	2 cut(s)	135, 643
BsiSI	CCGG	1 cut(s)	36
BsmAI	GTCTC	2 cut(s)	157, 428
BsmI	GAATGC	1 cut(s)	661
BsnI	GGCC	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	135, 643
Bsp143I	GATC	4 cut(s)	115, 184, 295, 448
BspACI	CCGC	3 cut(s)	78, 384, 503
BspANI	GGCC	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	78
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	2 cut(s)	304, 783
BspPI	GGATC	3 cut(s)	110, 290, 443
BspT104I	TTCGAA	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	29
BsrDI	GCAATG	2 cut(s)	42, 573
BssMI	GATC	4 cut(s)	115, 184, 295, 448
BssNI	GRCGYC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	331
Bst2BI	CACGAG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	517
Bst4CI	ACNGT	1 cut(s)	88
BstACI	GRCGYC	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	674, 838
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	4 cut(s)	118, 187, 298, 451
BstMAI	GTCTC	2 cut(s)	157, 428
BstMBI	GATC	4 cut(s)	115, 184, 295, 448
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 70, 389, 509
BstNI	CCWGG	1 cut(s)	517
BstNSI	RCATGY	1 cut(s)	704
BstSCI	CCNGG	1 cut(s)	515
BstSFI	CTRYAG	3 cut(s)	300, 378, 779
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	3 cut(s)	499, 598, 601
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	674, 838
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	84, 243
Cac8I	GCNNGC	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	966
CciI	TCATGA	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	578
CseI	GACGC	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	799
CviAII	CATG	5 cut(s)	51, 263, 547, 701, 791
CviQI	GTAC	1 cut(s)	799
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	4 cut(s)	117, 186, 297, 450
DpnII	GATC	4 cut(s)	115, 184, 295, 448
EciI	GGCGGA	1 cut(s)	518
Ecl136II	GAGCTC	1 cut(s)	641
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	578
Eco53kI	GAGCTC	1 cut(s)	641
Eco57I	CTGAAG	2 cut(s)	708, 792
EcoICRI	GAGCTC	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	515
EcoT38I	GRGCYC	1 cut(s)	643
FaeI	CATG	5 cut(s)	54, 266, 550, 704, 794
FatI	CATG	5 cut(s)	50, 262, 546, 700, 790
Fnu4HI	GCNGC	5 cut(s)	79, 384, 513, 612, 615
FokI	GGATG	2 cut(s)	681, 845
FriOI	GRGCYC	1 cut(s)	643
Fsp4HI	GCNGC	5 cut(s)	79, 384, 513, 612, 615
FspBI	CTAG	1 cut(s)	729
GluI	GCNGC	5 cut(s)	79, 384, 513, 612, 615
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	10
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	5 cut(s)	54, 266, 550, 704, 794
HindIII	AAGCTT	1 cut(s)	937
HinfI	GANTC	3 cut(s)	209, 467, 718
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	4 cut(s)	624, 654, 832, 968
Hpy188III	TCNNGA	5 cut(s)	263, 416, 452, 751, 818
Hpy8I	GTNNAC	1 cut(s)	444
HpyAV	CCTTC	4 cut(s)	191, 529, 732, 937
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4IV	ACGT	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 70, 389, 509
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	5 cut(s)	54, 266, 550, 704, 794
Kzo9I	GATC	4 cut(s)	115, 184, 295, 448
LmnI	GCTCC	3 cut(s)	69, 152, 638
Lsp1109I	GCAGC	3 cut(s)	499, 598, 601
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	729
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	4 cut(s)	22, 268, 550, 585
MalI	GATC	4 cut(s)	117, 186, 297, 450
MboI	GATC	4 cut(s)	115, 184, 295, 448
MboII	GAAGA	3 cut(s)	206, 366, 747
MfeI	CAATTG	1 cut(s)	930
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	2 cut(s)	135, 643
MluCI	AATT	3 cut(s)	540, 618, 930
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	143
MseI	TTAA	6 cut(s)	318, 327, 368, 558, 633, 675
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	517
MunI	CAATTG	1 cut(s)	930
Mva1269I	GAATGC	1 cut(s)	661
MvaI	CCWGG	1 cut(s)	517
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	4 cut(s)	61, 70, 389, 509
NdeII	GATC	4 cut(s)	115, 184, 295, 448
NlaIII	CATG	5 cut(s)	54, 266, 550, 704, 794
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	2 cut(s)	22, 268
NspI	RCATGY	1 cut(s)	704
NspV	TTCGAA	1 cut(s)	338
PagI	TCATGA	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	95
PciI	ACATGT	1 cut(s)	700
PctI	GAATGC	1 cut(s)	661
PfeI	GAWTC	2 cut(s)	467, 718
PkrI	GCNGC	5 cut(s)	80, 385, 514, 613, 616
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PscI	ACATGT	1 cut(s)	700
PshBI	ATTAAT	2 cut(s)	558, 675
Psp124BI	GAGCTC	1 cut(s)	643
Psp6I	CCWGG	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	515
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	578
PstI	CTGCAG	2 cut(s)	304, 783
PstNI	CAGNNNCTG	1 cut(s)	966
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	1 cut(s)	800
RsaNI	GTAC	1 cut(s)	799
SacI	GAGCTC	1 cut(s)	643
SaqAI	TTAA	6 cut(s)	318, 327, 368, 558, 633, 675
SatI	GCNGC	5 cut(s)	79, 384, 513, 612, 615
Sau3AI	GATC	4 cut(s)	115, 184, 295, 448
Sau96I	GGNCC	1 cut(s)	578
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	517
SduI	GDGCHC	2 cut(s)	135, 643
SfaNI	GCATC	1 cut(s)	257
SfcI	CTRYAG	3 cut(s)	300, 378, 779
SfuI	TTCGAA	1 cut(s)	338
SinI	GGWCC	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	920
SmoI	CTYRAG	1 cut(s)	920
Sse9I	AATT	3 cut(s)	540, 618, 930
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	3 cut(s)	78, 384, 503
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	1 cut(s)	729
SstI	GAGCTC	1 cut(s)	643
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	515
TaaI	ACNGT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	4 cut(s)	338, 409, 643, 750
TasI	AATT	3 cut(s)	540, 618, 930
TauI	GCSGC	2 cut(s)	81, 386
TfiI	GAWTC	2 cut(s)	467, 718
Tru1I	TTAA	6 cut(s)	318, 327, 368, 558, 633, 675
Tru9I	TTAA	6 cut(s)	318, 327, 368, 558, 633, 675
TscAI	CASTG	2 cut(s)	91, 250
TseFI	GTSAC	2 cut(s)	22, 268
TseI	GCWGC	3 cut(s)	512, 611, 614
Tsp45I	GTSAC	2 cut(s)	22, 268
TspDTI	ATGAA	1 cut(s)	39
TspRI	CASTG	2 cut(s)	91, 250
VpaK11BI	GGWCC	1 cut(s)	578
VspI	ATTAAT	2 cut(s)	558, 675
XceI	RCATGY	1 cut(s)	704
XspI	CTAG	1 cut(s)	729
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.