Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002294

Physical Location & Seq

Genomic Coordinates Reverse (-)

50117915 .. 50119088

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0372000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCAGCGAGGCCAAAAGCGCAGAGAAGACTCGGTTCTCGCCGGAATTGAAGAATCTCTTCACTCTGGAATCTCCGTCGTTCACTCTGGTTTTGGCGCGGAGGTATTCGGCGGCGAGGCGGGAGTGGAGAGACTTGATTCTATCCTGATTCTGGTCCAGCACAATTGCGTCCAGCCCTTTACCCAAGAATCCAAGGCTGGGCGTAAAGTTCAGTACATTGCGGTGTATGATATAACATACTCCATCGACTTAGTTCAGAATGCTGCTCAAGATAACTTTGTTAGACTTGTGACTGCTCGTTTTGTTGAACGTTGCCCGGCCCCTGAACCACTTCTTGAAGAAGCACCTGAACAAGAAGGTCCAAAGAAGCCACGCTCTAAATCTGCTAAGAGATTGAGTTGTATCGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008301 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0023052 GO:0031090 GO:0031627 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032200 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0035556 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.08

Weight (kDa)

6.3

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07540 AT3G46590 AT3G46590 AT3G46590 AT3G46590 AT3G46590 AT5G59430 AT5G59430 AT5G59430 AT5G59430 AT5G59430
fragaria_vesca	FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520
malus_domestica	MD03G1089900.v1.1 MD11G1099200.v1.1
prunus_persica	Prupe.6G074100_v2.0.a1 Prupe.6G074100_v2.0.a1
pyrus_communis	pycom03g07150 pycom11g08340
rosa_chinensis	RchiOBHm_Chr5g0065391 RchiOBHm_Chr5g0065401 RchiOBHm_Chr5g0065451
rosa_laevigata	RLG00000035788
rosa_multiflora	Rmu_sc0001010.1_g000092
rosa_roxburghii	Rroxscaffold_1G00015800
rosa_rugosa	Rorug05G0371900 Rorug05G0372000 Rorug05G0372100 Rorug05G0372100
rosa_samantha	Rh5AG429700 Rh5BG444900 Rh5CG467200 Rh5DG457400
rosa_wichuraiana	Rw5G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	98
AciI	CCGC	4 cut(s)	98, 111, 119, 221
AclI	AACGTT	1 cut(s)	310
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	151, 198
AgsI	TTSAA	3 cut(s)	50, 308, 338
Alw26I	GTCTC	1 cut(s)	124
AoxI	GGCC	2 cut(s)	10, 318
ApeKI	GCWGC	2 cut(s)	4, 263
Asp700I	GAANNNNTTC	2 cut(s)	57, 330
AspLEI	GCGC	2 cut(s)	21, 98
AspS9I	GGNCC	3 cut(s)	154, 319, 359
AsuC2I	CCSGG	1 cut(s)	317
AvaII	GGWCC	2 cut(s)	154, 359
BbsI	GAAGAC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	16, 250
BccI	CCATC	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	124
BisI	GCNGC	3 cut(s)	5, 112, 264
BlsI	GCNGC	3 cut(s)	6, 113, 265
Bme1390I	CCNGG	1 cut(s)	317
Bme18I	GGWCC	2 cut(s)	154, 359
BmgT120I	GGNCC	3 cut(s)	154, 319, 359
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 198
Bse3DI	GCAATG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	151, 198
BseMI	GCAATG	1 cut(s)	216
BseXI	GCAGC	2 cut(s)	16, 250
BseYI	CCCAGC	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	12, 320
BsiSI	CCGG	2 cut(s)	42, 317
BslI	CCNNNNNNNGG	2 cut(s)	151, 198
BsmAI	GTCTC	1 cut(s)	124
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	12, 320
BspACI	CCGC	4 cut(s)	98, 111, 119, 221
BspANI	GGCC	2 cut(s)	12, 320
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	63
BstDEI	CTNAG	2 cut(s)	250, 387
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	2 cut(s)	21, 98
BstMAI	GTCTC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	16, 250
BstV2I	GAAGAC	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	12, 320
CfoI	GCGC	2 cut(s)	21, 98
Cfr13I	GGNCC	3 cut(s)	154, 319, 359
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	214
CviJI	RGCY	5 cut(s)	12, 175, 197, 320, 370
CviKI_1	RGCY	5 cut(s)	12, 175, 197, 320, 370
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	250, 387
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	2 cut(s)	154, 359
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaiI	YATR	3 cut(s)	228, 233, 238
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FauI	CCCGC	1 cut(s)	112
Fnu4HI	GCNGC	3 cut(s)	5, 112, 264
Fsp4HI	GCNGC	3 cut(s)	5, 112, 264
GlaI	GCGC	2 cut(s)	20, 97
GluI	GCNGC	3 cut(s)	5, 112, 264
GsaI	CCCAGC	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	12, 320
HapII	CCGG	2 cut(s)	42, 317
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	2 cut(s)	21, 98
Hin6I	GCGC	2 cut(s)	19, 96
HinP1I	GCGC	2 cut(s)	19, 96
HinfI	GANTC	6 cut(s)	29, 53, 69, 137, 148, 188
HpaII	CCGG	2 cut(s)	42, 317
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	4 cut(s)	66, 145, 269, 335
Hpy8I	GTNNAC	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	350
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	2 cut(s)	250, 387
HpySE526I	ACGT	1 cut(s)	310
HspAI	GCGC	2 cut(s)	19, 96
Lsp1109I	GCAGC	2 cut(s)	16, 250
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	289
MboII	GAAGA	4 cut(s)	38, 50, 62, 350
MfeI	CAATTG	1 cut(s)	163
MluCI	AATT	2 cut(s)	45, 163
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	2 cut(s)	94, 109
MroXI	GAANNNNTTC	2 cut(s)	57, 330
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	2 cut(s)	42, 317
MspR9I	CCNGG	1 cut(s)	317
MunI	CAATTG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	265
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	18
NciI	CCSGG	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	289
PctI	GAATGC	1 cut(s)	265
PdmI	GAANNNNTTC	2 cut(s)	57, 330
PfeI	GAWTC	5 cut(s)	53, 69, 137, 148, 188
PkrI	GCNGC	3 cut(s)	6, 113, 265
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp1406I	AACGTT	1 cut(s)	310
PspFI	CCCAGC	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	3 cut(s)	154, 319, 359
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	221
SatI	GCNGC	3 cut(s)	5, 112, 264
Sau96I	GGNCC	3 cut(s)	154, 319, 359
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	4 cut(s)	105, 313, 349, 361
SinI	GGWCC	2 cut(s)	154, 359
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
Sse9I	AATT	2 cut(s)	45, 163
SsiI	CCGC	4 cut(s)	98, 111, 119, 221
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	192
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	1 cut(s)	246
TasI	AATT	2 cut(s)	45, 163
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	5 cut(s)	53, 69, 137, 148, 188
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	4, 263
Tsp45I	GTSAC	1 cut(s)	289
TspGWI	ACGGA	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	154, 359
XmnI	GAANNNNTTC	2 cut(s)	57, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.