Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002294

Physical Location & Seq

Genomic Coordinates Forward (+)

71238940 .. 71240820

Gene Structure 1881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34126

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGTGTTGCAGAAGAGGTTGGATTATGGATTCAATGGCTTTCAGGTGCCGGTCACTCCTCGAGCTCCGAGATCAGCGAGGAGAAGGAGTACAATTAGCAAGAGAGATGAAGACAATTCAATGGGTGCATTTGACTTATTGGCCACCGTAGCTGGCAAGTTATTGCTCGAGAGGAGAGAGTTCTCCTGCTTCCAGTCATACATCGACTGGAAAAGAAAAGTGTTCAATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008301 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0023052 GO:0031090 GO:0031627 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032200 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0035556 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

77

Amino Acids

9.04

Weight (kDa)

10.6

Isoelectric Point (pI)

70.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07540 AT3G46590 AT3G46590 AT3G46590 AT3G46590 AT3G46590 AT5G59430 AT5G59430 AT5G59430 AT5G59430 AT5G59430
fragaria_vesca	FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520
malus_domestica	MD03G1089900.v1.1 MD11G1099200.v1.1
prunus_persica	Prupe.6G074100_v2.0.a1 Prupe.6G074100_v2.0.a1
pyrus_communis	pycom03g07150 pycom11g08340
rosa_chinensis	RchiOBHm_Chr5g0065391 RchiOBHm_Chr5g0065401 RchiOBHm_Chr5g0065451
rosa_laevigata	RLG00000035788
rosa_multiflora	Rmu_sc0001010.1_g000092
rosa_roxburghii	Rroxscaffold_1G00015800
rosa_rugosa	Rorug05G0371900 Rorug05G0372000 Rorug05G0372100 Rorug05G0372100
rosa_samantha	Rh5AG429700 Rh5BG444900 Rh5CG467200 Rh5DG457400
rosa_wichuraiana	Rw5G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	141
AfaI	GTAC	1 cut(s)	91
AgsI	TTSAA	3 cut(s)	34, 120, 226
AluBI	AGCT	2 cut(s)	65, 152
AluI	AGCT	2 cut(s)	65, 152
Alw21I	GWGCWC	1 cut(s)	67
Ama87I	CYCGRG	2 cut(s)	60, 167
AoxI	GGCC	1 cut(s)	141
AvaI	CYCGRG	2 cut(s)	60, 167
BalI	TGGCCA	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	67
BmeT110I	CYCGRG	2 cut(s)	60, 167
BmiI	GGNNCC	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	193, 212
BseNI	ACTGG	2 cut(s)	193, 212
BseRI	GAGGAG	3 cut(s)	48, 94, 187
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	2 cut(s)	60, 167
BsiSI	CCGG	1 cut(s)	50
BsnI	GGCC	1 cut(s)	143
BsoBI	CYCGRG	2 cut(s)	60, 167
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	71
BspANI	GGCC	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	193, 212
BssAI	RCCGGY	1 cut(s)	49
BssMI	GATC	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	117
BsuRI	GGCC	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	90
CviJI	RGCY	4 cut(s)	39, 65, 143, 152
CviKI_1	RGCY	4 cut(s)	39, 65, 143, 152
CviQI	GTAC	1 cut(s)	90
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	65
Eco88I	CYCGRG	2 cut(s)	60, 167
EcoICRI	GAGCTC	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	67
FaiI	YATR	2 cut(s)	27, 199
FriOI	GRGCYC	1 cut(s)	67
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	50
HinfI	GANTC	1 cut(s)	30
HpaII	CCGG	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	10, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	6 cut(s)	29, 63, 138, 193, 199, 206
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	2 cut(s)	25, 122
MhlI	GDGCHC	1 cut(s)	67
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	2 cut(s)	93, 115
MluNI	TGGCCA	1 cut(s)	143
MnlI	CCTC	4 cut(s)	9, 69, 72, 165
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	1 cut(s)	232
Msp20I	TGGCCA	1 cut(s)	143
MspI	CCGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeII	GATC	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	52
PaeR7I	CTCGAG	2 cut(s)	60, 167
PfeI	GAWTC	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	48
PspXI	VCTCGAGB	1 cut(s)	60
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	232
Sau3AI	GATC	1 cut(s)	71
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	4 cut(s)	20, 48, 67, 154
Sfr274I	CTCGAG	2 cut(s)	60, 167
SlaI	CTCGAG	2 cut(s)	60, 167
SmlI	CTYRAG	2 cut(s)	60, 167
SmoI	CTYRAG	2 cut(s)	60, 167
Sse9I	AATT	2 cut(s)	93, 115
SstI	GAGCTC	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	3 cut(s)	61, 168, 204
TasI	AATT	2 cut(s)	93, 115
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	1 cut(s)	232
Tru9I	TTAA	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	123
XhoI	CTCGAG	2 cut(s)	60, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.