Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002294

Physical Location & Seq

Genomic Coordinates Reverse (-)

8267083 .. 8272649

Gene Structure 5567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1099200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2043 bp

ATGGTGATGCAGAAGAGGTTGGATTACGGATTCAATGGCTATCAGGTGCCTGTCACTCCTAAAGCTTATAGATCAGCAAGGAAGCGGCGTGCAGTTAGAAAGATGGTTGAAGACAATGCAATGGGTGCATTTGACTTGTTGGCCACTGTAGCTGGCAAGTTATTGCTCGAGGGAGAGAGTTCTCCCGCTTCCAGTCATACATCAATCGGAAAAGTTCAATGTGCAGGTATTAAGGAGAATTATCTGGCTGGAGATAAAACCTTGAAAGTGGAACCTTGTGATCGAGGCAGTTGTGATAGGATACCTTTGGTATCTGATCATATGTCAACAGGTCAGAATCTAAGTTCGTGCTCCAAGGCTTCTCCAGTTCATCAGAATGAAAGTCATTCGGTTATGACAACTTCTAATGGCTCGGAGAGGTTTGTTTCTGACATGTTGGCGAGTGGAAAATGCAAGAATGAATTGGGAAGTCTTACTGGGAAAATAGAAGCAGGCTATTCTGGGAACAGGGAGTCTGGTGAATGTAAATTAGATAATAAAGTTAAAATATTAGTAAAGGATGAGACTAATAAGAGTGGGGAGGTGGTTACTGGTAACGGGCCTGATATGTGCAGTTTTCAGGATCCGGTTGTCTGGGAAGGTGAACCTCCTCCGCTAGTTAGTTCAGATAGTAGCACCAAGGTGCCTATGTATGTAGATCATATTCCTCAGAGATCTTTCCCCGCTAGCCGGGATGATGTAAAATTAGTTGGTAGAGATGATGACGAAAATTTCTTTGGGTGTACTCACCCTAGTACAGCCATGAAGTATTCAAGGCCAGCGCCGTCGCGTATTGGAGACCGAAGAATACGGAAAATATTGGCTTCGAAATATTGGAAAGTAGCTCCAAAGTCGAAGGATGAGACACATTCTAATTCCTATCGGGATATGAAACCAAATTACCACAACAGGAAGAATTGCTACAAACGTCAAAGATCTCAAATGAATATGCCTTTCAAGAAAAGGAGGCTTTTTGACCGTAGCACAGTTCCAAATCCTGATCAAGGTATTAGTAGAGAGGGATTCTTTGACTTGCGGGGGAAGGGAACCAATGTAAATGCTTCTGCTTCGTGTTCAAAGATGCAAGCCACTGGGATGTCTTCTTCGGTAGGAGGTCAGCACTCATCTTTCCAATCAAGGAATTCGCATGTGAAGCTCAGGATCAAGTCGTTTAGGGTTCCAGAGCTATTTATTGAGATTCCGGAGACAGCAACTGTTGGTTCATTAAAGAAAACAGTTATGGAAGCAGTGACAGCTGTACTTGGTGGTGGATTATGTGTTGGTGTACTTCTTCAAGGAAAGAAAGTGAGAGATGACAACAAAACTTTACTGCAAACAGGAATTTCTCAAGATGACCATCTAGATTCTGTGGGATTTTCCTTGGAACCCAACCCTTCCCGAACCCCTCTACCTTTATGTTCTGATGGTTCTCCAAGTATGCTTCCCTGTGATGAAGTAAAGCCTTTAACAAGGTACCAACCGGGTCCTACTGGTGAACCCCTACCTGAACCTCATATGGCCAGTTTTGGGAGCTACATTGAAAGTGATCATGATTCAGCACCCTCTCCAACTGATATGTCAGCTGAAAAAAGCACAACAGATTCTAAAGCACTGGTTGCTGTTCCAGATCTGAGTATGGATGCATTGGCTGTGGTTCCTGGGAACAGGAAATCAAGGCGGTTTGATATTGGACAGCGCCGAATTCGTCGACCTTTCTCTGTTACAGAAGTGGAAGCACTTGTCCAAGCGGTTGAGAAACTTGGTACCGGAAGGTGGCGTGATGTTAAACTACGAGCTTTTGACAACGCTAAGCATCGAACATATGTGGATTTAAAGGATAAGTGGAAAACCCTAGTGCACACGGCGAGAATATCTCCTCAACAGAGGCGGGGAGAGCCCGTCCCGCAGGAGCTCTTGGACAGGGTCCTAACAGCTCATGCGTACTGGTCCCAGCAGCAAGCCAAACAACAGCTCAAACAGCCCGAGACTTGCCTTCTCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000228 GO:0000723 GO:0000781 GO:0000782 GO:0000783 GO:0000784 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005694 GO:0005737 GO:0005886 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008301 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0023052 GO:0031090 GO:0031627 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032200 GO:0032870 GO:0032991 GO:0032993 GO:0033993 GO:0034641 GO:0035556 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

681

Amino Acids

75.15

Weight (kDa)

9.32

Isoelectric Point (pI)

51.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubiquitin_TPR1	PF23603	396 - 464	4.4e-40	Telomere repeat-binding protein 1-like, ubiquitin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002294)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07540 AT3G46590 AT3G46590 AT3G46590 AT3G46590 AT3G46590 AT5G59430 AT5G59430 AT5G59430 AT5G59430 AT5G59430
fragaria_vesca	FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520 FvH4_3g36520
malus_domestica	MD03G1089900.v1.1 MD11G1099200.v1.1
prunus_persica	Prupe.6G074100_v2.0.a1 Prupe.6G074100_v2.0.a1
pyrus_communis	pycom03g07150 pycom11g08340
rosa_chinensis	RchiOBHm_Chr5g0065391 RchiOBHm_Chr5g0065401 RchiOBHm_Chr5g0065451
rosa_laevigata	RLG00000035788
rosa_multiflora	Rmu_sc0001010.1_g000092
rosa_roxburghii	Rroxscaffold_1G00015800
rosa_rugosa	Rorug05G0371900 Rorug05G0372000 Rorug05G0372100 Rorug05G0372100
rosa_samantha	Rh5AG429700 Rh5BG444900 Rh5CG467200 Rh5DG457400
rosa_wichuraiana	Rw5G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	215
Acc65I	GGTACC	2 cut(s)	1512, 1802
AccB1I	GGYRCC	4 cut(s)	46, 682, 1512, 1802
AccI	GTMKAC	1 cut(s)	1747
AccII	CGCG	1 cut(s)	829
AccIII	TCCGGA	1 cut(s)	1240
AciI	CCGC	9 cut(s)	85, 186, 653, 723, 1075, 1717, 1787, 1927, 1943
AclWI	GGATC	3 cut(s)	617, 630, 1208
AcoI	YGGCCR	2 cut(s)	141, 1557
AcsI	RAATTY	4 cut(s)	769, 1180, 1380, 1740
AfaI	GTAC	7 cut(s)	784, 796, 1299, 1326, 1514, 1804, 1982
AfiI	CCNNNNNNNGG	4 cut(s)	729, 1043, 1566, 1812
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	9 cut(s)	34, 110, 218, 265, 813, 997, 1116, 1334, 1580
AjnI	CCWGG	1 cut(s)	1696
AjuI	GAANNNNNNNTTGG	2 cut(s)	759, 791
AleI	CACNNNNGTG	1 cut(s)	680
Alw21I	GWGCWC	3 cut(s)	353, 1899, 1953
Alw26I	GTCTC	5 cut(s)	557, 831, 896, 1238, 2018
Alw44I	GTGCAC	1 cut(s)	1895
AlwI	GGATC	3 cut(s)	617, 630, 1208
AlwNI	CAGNNNCTG	1 cut(s)	1253
Ama87I	CYCGRG	2 cut(s)	167, 2021
Aor13HI	TCCGGA	1 cut(s)	1240
AoxI	GGCC	4 cut(s)	141, 599, 815, 1557
ApaLI	GTGCAC	1 cut(s)	1895
ApeKI	GCWGC	1 cut(s)	1993
ApoI	RAATTY	4 cut(s)	769, 1180, 1380, 1740
Asp718I	GGTACC	2 cut(s)	1512, 1802
AspLEI	GCGC	2 cut(s)	823, 1737
AspS9I	GGNCC	4 cut(s)	599, 1523, 1963, 1986
AsuC2I	CCSGG	2 cut(s)	731, 1521
AsuHPI	GGTGA	5 cut(s)	16, 530, 653, 779, 1544
AsuII	TTCGAA	1 cut(s)	866
AsuNHI	GCTAGC	1 cut(s)	725
AvaI	CYCGRG	2 cut(s)	167, 2021
AvaII	GGWCC	3 cut(s)	1523, 1963, 1986
BaeGI	GKGCMC	1 cut(s)	1899
BalI	TGGCCA	2 cut(s)	143, 1559
BamHI	GGATCC	1 cut(s)	622
BanI	GGYRCC	4 cut(s)	46, 682, 1512, 1802
BanII	GRGCYC	2 cut(s)	1938, 1953
BarI	GAAGNNNNNNTAC	2 cut(s)	944, 976
BbsI	GAAGAC	2 cut(s)	117, 1131
Bbv12I	GWGCWC	3 cut(s)	353, 1899, 1953
BbvI	GCAGC	1 cut(s)	2005
BccI	CCATC	3 cut(s)	97, 1404, 1457
BceAI	ACGGC	2 cut(s)	808, 1917
BciT130I	CCWGG	1 cut(s)	1698
BciVI	GTATCC	1 cut(s)	294
BclI	TGATCA	3 cut(s)	316, 1039, 1585
BcnI	CCSGG	2 cut(s)	731, 1521
BcoDI	GTCTC	5 cut(s)	557, 831, 896, 1238, 2018
BfaI	CTAG	6 cut(s)	656, 726, 792, 1400, 1892, 2041
BfmI	CTRYAG	1 cut(s)	147
BfoI	RGCGCY	2 cut(s)	824, 1738
BfuAI	ACCTGC	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	294
BglII	AGATCT	3 cut(s)	713, 974, 1666
BisI	GCNGC	2 cut(s)	86, 1994
BlpI	GCTNAGC	1 cut(s)	1848
BlsI	GCNGC	2 cut(s)	87, 1995
Bme1390I	CCNGG	3 cut(s)	731, 1521, 1698
Bme18I	GGWCC	3 cut(s)	1523, 1963, 1986
BmeT110I	CYCGRG	2 cut(s)	167, 2021
BmgT120I	GGNCC	4 cut(s)	599, 1523, 1963, 1986
BmrFI	CCNGG	3 cut(s)	731, 1521, 1698
BmrI	ACTGGG	2 cut(s)	486, 1140
BmsI	GCATC	3 cut(s)	1110, 1669, 1861
BmtI	GCTAGC	1 cut(s)	729
BmuI	ACTGGG	2 cut(s)	486, 1140
BpiI	GAAGAC	2 cut(s)	117, 1131
BplI	GAGNNNNNCTC	2 cut(s)	1897, 1929
BpmI	CTGGAG	2 cut(s)	270, 348
Bpu10I	CCTNAGC	1 cut(s)	1196
Bpu1102I	GCTNAGC	1 cut(s)	1848
Bpu14I	TTCGAA	1 cut(s)	866
BpuEI	CTTGAG	1 cut(s)	1371
BpuMI	CCSGG	2 cut(s)	731, 1521
BsaBI	GATNNNNATC	1 cut(s)	1395
BsaI	GGTCTC	1 cut(s)	831
BsaJI	CCNNGG	4 cut(s)	354, 678, 1419, 1697
BsaWI	WCCGGW	3 cut(s)	625, 1240, 1805
BsaXI	ACNNNNNCTCC	2 cut(s)	1923, 1953
Bsc4I	CCNNNNNNNGG	4 cut(s)	729, 1043, 1566, 1812
Bse1I	ACTGG	9 cut(s)	192, 365, 481, 595, 1135, 1534, 1560, 1656, 1988
Bse3DI	GCAATG	1 cut(s)	126
Bse8I	GATNNNNATC	1 cut(s)	1395
BseAI	TCCGGA	1 cut(s)	1240
BseBI	CCWGG	1 cut(s)	1698
BseDI	CCNNGG	4 cut(s)	354, 678, 1419, 1697
BseGI	GGATG	5 cut(s)	565, 739, 904, 1140, 1684
BseJI	GATNNNNATC	1 cut(s)	1395
BseLI	CCNNNNNNNGG	4 cut(s)	729, 1043, 1566, 1812
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	3 cut(s)	722, 1210, 1661
BseNI	ACTGG	9 cut(s)	192, 365, 481, 595, 1135, 1534, 1560, 1656, 1988
BseRI	GAGGAG	2 cut(s)	639, 1905
BseSI	GKGCMC	1 cut(s)	1899
BseXI	GCAGC	1 cut(s)	2005
BseYI	CCCAGC	1 cut(s)	1989
BsgI	GTGCAG	3 cut(s)	111, 243, 631
Bsh1236I	CGCG	1 cut(s)	829
BshFI	GGCC	4 cut(s)	143, 601, 817, 1559
BshNI	GGYRCC	4 cut(s)	46, 682, 1512, 1802
BsiHKAI	GWGCWC	3 cut(s)	353, 1899, 1953
BsiHKCI	CYCGRG	2 cut(s)	167, 2021
BsiSI	CCGG	5 cut(s)	626, 730, 1241, 1520, 1806
BslFI	GGGAC	2 cut(s)	1925, 1972
BslI	CCNNNNNNNGG	4 cut(s)	729, 1043, 1566, 1812
BsmAI	GTCTC	5 cut(s)	557, 831, 896, 1238, 2018
BsmFI	GGGAC	2 cut(s)	1925, 1972
BsnI	GGCC	4 cut(s)	143, 601, 817, 1559
Bso31I	GGTCTC	1 cut(s)	831
BsoBI	CYCGRG	2 cut(s)	167, 2021
Bsp119I	TTCGAA	1 cut(s)	866
Bsp1286I	GDGCHC	4 cut(s)	353, 1899, 1938, 1953
Bsp13I	TCCGGA	1 cut(s)	1240
Bsp1720I	GCTNAGC	1 cut(s)	1848
BspACI	CCGC	9 cut(s)	85, 186, 653, 723, 1075, 1717, 1787, 1927, 1943
BspANI	GGCC	4 cut(s)	143, 601, 817, 1559
BspCNI	CTCAG	3 cut(s)	721, 1209, 1662
BspEI	TCCGGA	1 cut(s)	1240
BspFNI	CGCG	1 cut(s)	829
BspHI	TCATGA	1 cut(s)	1588
BspMI	ACCTGC	1 cut(s)	215
BspOI	GCTAGC	1 cut(s)	729
BspPI	GGATC	3 cut(s)	617, 630, 1208
BspT104I	TTCGAA	1 cut(s)	866
BspT107I	GGYRCC	4 cut(s)	46, 682, 1512, 1802
BspTNI	GGTCTC	1 cut(s)	831
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	9 cut(s)	192, 365, 481, 595, 1135, 1534, 1560, 1656, 1988
BssECI	CCNNGG	4 cut(s)	354, 678, 1419, 1697
BssT1I	CCWWGG	3 cut(s)	354, 678, 1419
Bst2UI	CCWGG	1 cut(s)	1698
Bst4CI	ACNGT	5 cut(s)	148, 1019, 1027, 1255, 1276
Bst6I	CTCTTC	1 cut(s)	8
BstAPI	GCANNNNNTGC	2 cut(s)	125, 1655
BstBI	TTCGAA	1 cut(s)	866
BstC8I	GCNNGC	7 cut(s)	90, 154, 493, 727, 819, 1125, 1998
BstDEI	CTNAG	5 cut(s)	341, 708, 1196, 1670, 1848
BstENI	CCTNNNNNAGG	1 cut(s)	1041
BstF5I	GGATG	5 cut(s)	565, 739, 904, 1140, 1684
BstFNI	CGCG	1 cut(s)	829
BstH2I	RGCGCY	2 cut(s)	824, 1738
BstHHI	GCGC	2 cut(s)	823, 1737
BstMAI	GTCTC	5 cut(s)	557, 831, 896, 1238, 2018
BstMWI	GCNNNNNNNGC	8 cut(s)	125, 149, 1192, 1292, 1655, 1933, 1942, 2017
BstNI	CCWGG	1 cut(s)	1698
BstNSI	RCATGY	2 cut(s)	436, 1190
BstSCI	CCNGG	3 cut(s)	729, 1519, 1696
BstSFI	CTRYAG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	1899
BstUI	CGCG	1 cut(s)	829
BstV1I	GCAGC	1 cut(s)	2005
BstV2I	GAAGAC	2 cut(s)	117, 1131
BstX2I	RGATCY	4 cut(s)	622, 713, 974, 1666
BstYI	RGATCY	4 cut(s)	622, 713, 974, 1666
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	4 cut(s)	143, 601, 817, 1559
BtsCI	GGATG	5 cut(s)	565, 739, 904, 1140, 1684
BtsI	GCAGTG	1 cut(s)	1293
BtsIMutI	CAGTG	4 cut(s)	144, 1128, 1293, 1649
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	7 cut(s)	90, 154, 493, 727, 819, 1125, 1998
CaiI	CAGNNNCTG	1 cut(s)	1253
CciI	TCATGA	1 cut(s)	1588
CfoI	GCGC	2 cut(s)	823, 1737
Cfr13I	GGNCC	4 cut(s)	599, 1523, 1963, 1986
Csp6I	GTAC	7 cut(s)	783, 795, 1298, 1325, 1513, 1803, 1981
CviAII	CATG	5 cut(s)	433, 802, 1187, 1589, 1976
CviQI	GTAC	7 cut(s)	783, 795, 1298, 1325, 1513, 1803, 1981
DdeI	CTNAG	5 cut(s)	341, 708, 1196, 1670, 1848
DraI	TTTAAA	1 cut(s)	1872
EaeI	YGGCCR	2 cut(s)	141, 1557
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Ecl136II	GAGCTC	1 cut(s)	1951
Eco130I	CCWWGG	3 cut(s)	354, 678, 1419
Eco24I	GRGCYC	2 cut(s)	1938, 1953
Eco31I	GGTCTC	1 cut(s)	831
Eco47I	GGWCC	3 cut(s)	1523, 1963, 1986
Eco53kI	GAGCTC	1 cut(s)	1951
Eco88I	CYCGRG	2 cut(s)	167, 2021
EcoICRI	GAGCTC	1 cut(s)	1951
EcoNI	CCTNNNNNAGG	1 cut(s)	1041
EcoO109I	RGGNCCY	2 cut(s)	1523, 1963
EcoRI	GAATTC	2 cut(s)	1180, 1740
EcoRII	CCWGG	1 cut(s)	1696
EcoT14I	CCWWGG	3 cut(s)	354, 678, 1419
EcoT22I	ATGCAT	1 cut(s)	1684
EcoT38I	GRGCYC	2 cut(s)	1938, 1953
ErhI	CCWWGG	3 cut(s)	354, 678, 1419
FaeI	CATG	5 cut(s)	436, 805, 1190, 1592, 1979
FaqI	GGGAC	2 cut(s)	1925, 1972
FatI	CATG	5 cut(s)	432, 801, 1186, 1588, 1975
FauI	CCCGC	5 cut(s)	193, 730, 1068, 1920, 1950
FauNDI	CATATG	3 cut(s)	321, 1554, 1861
FbaI	TGATCA	3 cut(s)	316, 1039, 1585
FblI	GTMKAC	1 cut(s)	1747
Fnu4HI	GCNGC	2 cut(s)	86, 1994
FokI	GGATG	5 cut(s)	572, 746, 911, 1147, 1691
FriOI	GRGCYC	2 cut(s)	1938, 1953
Fsp4HI	GCNGC	2 cut(s)	86, 1994
FspBI	CTAG	6 cut(s)	656, 726, 792, 1400, 1892, 2041
GlaI	GCGC	2 cut(s)	822, 1736
GluI	GCNGC	2 cut(s)	86, 1994
GsaI	CCCAGC	1 cut(s)	1993
GsuI	CTGGAG	2 cut(s)	270, 348
HaeII	RGCGCY	2 cut(s)	824, 1738
HaeIII	GGCC	4 cut(s)	143, 601, 817, 1559
HapII	CCGG	5 cut(s)	626, 730, 1241, 1520, 1806
HhaI	GCGC	2 cut(s)	823, 1737
Hin1II	CATG	5 cut(s)	436, 805, 1190, 1592, 1979
Hin6I	GCGC	2 cut(s)	821, 1735
HinP1I	GCGC	2 cut(s)	821, 1735
HincII	GTYRAC	2 cut(s)	327, 1748
HindII	GTYRAC	2 cut(s)	327, 1748
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	8 cut(s)	30, 337, 512, 1062, 1237, 1403, 1592, 1640
HpaII	CCGG	5 cut(s)	626, 730, 1241, 1520, 1806
HphI	GGTGA	5 cut(s)	16, 530, 653, 779, 1544
Hpy166II	GTNNAC	7 cut(s)	327, 644, 783, 1325, 1535, 1748, 1897
Hpy8I	GTNNAC	7 cut(s)	327, 644, 783, 1325, 1535, 1748, 1897
Hpy99I	CGWCG	2 cut(s)	829, 1749
HpyAV	CCTTC	6 cut(s)	632, 889, 1075, 1443, 1803, 2042
HpyCH4III	ACNGT	5 cut(s)	148, 1019, 1027, 1255, 1276
HpyCH4IV	ACGT	1 cut(s)	967
HpyF10VI	GCNNNNNNNGC	8 cut(s)	125, 149, 1192, 1292, 1655, 1933, 1942, 2017
HpyF3I	CTNAG	5 cut(s)	341, 708, 1196, 1670, 1848
HpySE526I	ACGT	1 cut(s)	967
Hsp92II	CATG	5 cut(s)	436, 805, 1190, 1592, 1979
HspAI	GCGC	2 cut(s)	821, 1735
Kpn2I	TCCGGA	1 cut(s)	1240
KpnI	GGTACC	2 cut(s)	1516, 1806
Ksp22I	TGATCA	3 cut(s)	316, 1039, 1585
LmnI	GCTCC	4 cut(s)	356, 889, 1569, 1948
Lsp1109I	GCAGC	1 cut(s)	2005
LweI	GCATC	3 cut(s)	1110, 1669, 1861
MaeI	CTAG	6 cut(s)	656, 726, 792, 1400, 1892, 2041
MaeII	ACGT	1 cut(s)	967
MaeIII	GTNAC	5 cut(s)	52, 586, 593, 1288, 1759
MboII	GAAGA	7 cut(s)	25, 122, 855, 964, 1131, 1134, 1322
MflI	RGATCY	4 cut(s)	622, 713, 974, 1666
MhlI	GDGCHC	4 cut(s)	353, 1899, 1938, 1953
MlsI	TGGCCA	2 cut(s)	143, 1559
MluNI	TGGCCA	2 cut(s)	143, 1559
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	1631
Mox20I	TGGCCA	2 cut(s)	143, 1559
Mph1103I	ATGCAT	1 cut(s)	1684
MroI	TCCGGA	1 cut(s)	1240
MscI	TGGCCA	2 cut(s)	143, 1559
MseI	TTAA	6 cut(s)	231, 543, 1265, 1505, 1824, 1871
MslI	CAYNNNNRTG	3 cut(s)	375, 680, 1133
Msp20I	TGGCCA	2 cut(s)	143, 1559
MspA1I	CMGCKG	2 cut(s)	1295, 1622
MspI	CCGG	5 cut(s)	626, 730, 1241, 1520, 1806
MspR9I	CCNGG	3 cut(s)	731, 1521, 1698
MvaI	CCWGG	1 cut(s)	1698
MvnI	CGCG	1 cut(s)	829
MwoI	GCNNNNNNNGC	8 cut(s)	125, 149, 1192, 1292, 1655, 1933, 1942, 2017
NciI	CCSGG	2 cut(s)	731, 1521
NdeI	CATATG	3 cut(s)	321, 1554, 1861
NheI	GCTAGC	1 cut(s)	725
NlaIII	CATG	5 cut(s)	436, 805, 1190, 1592, 1979
NmuCI	GTSAC	2 cut(s)	52, 1288
NsiI	ATGCAT	1 cut(s)	1684
NspI	RCATGY	2 cut(s)	436, 1190
NspV	TTCGAA	1 cut(s)	866
OliI	CACNNNNGTG	1 cut(s)	680
PaeR7I	CTCGAG	1 cut(s)	167
PagI	TCATGA	1 cut(s)	1588
PciI	ACATGT	1 cut(s)	432
PfeI	GAWTC	7 cut(s)	30, 337, 1062, 1237, 1403, 1592, 1640
PflFI	GACNNNGTC	1 cut(s)	1961
PkrI	GCNGC	2 cut(s)	87, 1995
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PpuMI	RGGWCCY	2 cut(s)	1523, 1963
PscI	ACATGT	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	1953
Psp5II	RGGWCCY	2 cut(s)	1523, 1963
Psp6I	CCWGG	1 cut(s)	1696
PspFI	CCCAGC	1 cut(s)	1989
PspGI	CCWGG	1 cut(s)	1696
PspPI	GGNCC	4 cut(s)	599, 1523, 1963, 1986
PspPPI	RGGWCCY	2 cut(s)	1523, 1963
PspXI	VCTCGAGB	1 cut(s)	167
PstNI	CAGNNNCTG	1 cut(s)	1253
PsuI	RGATCY	4 cut(s)	622, 713, 974, 1666
PsyI	GACNNNGTC	1 cut(s)	1961
PvuII	CAGCTG	2 cut(s)	1295, 1622
RsaI	GTAC	7 cut(s)	784, 796, 1299, 1326, 1514, 1804, 1982
RsaNI	GTAC	7 cut(s)	783, 795, 1298, 1325, 1513, 1803, 1981
RseI	CAYNNNNRTG	3 cut(s)	375, 680, 1133
SacI	GAGCTC	1 cut(s)	1953
SalI	GTCGAC	1 cut(s)	1746
SaqAI	TTAA	6 cut(s)	231, 543, 1265, 1505, 1824, 1871
SatI	GCNGC	2 cut(s)	86, 1994
Sau96I	GGNCC	4 cut(s)	599, 1523, 1963, 1986
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	3 cut(s)	731, 1521, 1698
SduI	GDGCHC	4 cut(s)	353, 1899, 1938, 1953
SfaNI	GCATC	3 cut(s)	1110, 1669, 1861
SfcI	CTRYAG	1 cut(s)	147
Sfr274I	CTCGAG	1 cut(s)	167
SfuI	TTCGAA	1 cut(s)	866
SinI	GGWCC	3 cut(s)	1523, 1963, 1986
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	3 cut(s)	375, 680, 1133
SmlI	CTYRAG	2 cut(s)	167, 1386
SmoI	CTYRAG	2 cut(s)	167, 1386
SsiI	CCGC	9 cut(s)	85, 186, 653, 723, 1075, 1717, 1787, 1927, 1943
SspI	AATATT	3 cut(s)	549, 858, 872
SspMI	CTAG	6 cut(s)	656, 726, 792, 1400, 1892, 2041
SstI	GAGCTC	1 cut(s)	1953
StyD4I	CCNGG	3 cut(s)	729, 1519, 1696
StyI	CCWWGG	3 cut(s)	354, 678, 1419
TaaI	ACNGT	5 cut(s)	148, 1019, 1027, 1255, 1276
TaiI	ACGT	1 cut(s)	970
TaqI	TCGA	6 cut(s)	168, 283, 866, 893, 1747, 1855
TaqII	GACCGA	1 cut(s)	855
TatI	WGTACW	4 cut(s)	782, 794, 1297, 1324
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	7 cut(s)	30, 337, 1062, 1237, 1403, 1592, 1640
Tru1I	TTAA	6 cut(s)	231, 543, 1265, 1505, 1824, 1871
Tru9I	TTAA	6 cut(s)	231, 543, 1265, 1505, 1824, 1871
TscAI	CASTG	4 cut(s)	151, 1135, 1293, 1656
TseFI	GTSAC	2 cut(s)	52, 1288
TseI	GCWGC	1 cut(s)	1993
Tsp45I	GTSAC	2 cut(s)	52, 1288
TspDTI	ATGAA	8 cut(s)	359, 393, 474, 818, 944, 998, 1251, 1506
TspGWI	ACGGA	2 cut(s)	42, 865
TspRI	CASTG	4 cut(s)	151, 1135, 1293, 1656
Tth111I	GACNNNGTC	1 cut(s)	1961
VneI	GTGCAC	1 cut(s)	1895
VpaK11BI	GGWCC	3 cut(s)	1523, 1963, 1986
XagI	CCTNNNNNAGG	1 cut(s)	1041
XapI	RAATTY	4 cut(s)	769, 1180, 1380, 1740
XbaI	TCTAGA	1 cut(s)	1399
XceI	RCATGY	2 cut(s)	436, 1190
XhoI	CTCGAG	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	1747
XspI	CTAG	6 cut(s)	656, 726, 792, 1400, 1892, 2041
Zsp2I	ATGCAT	1 cut(s)	1684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.