pycom11g08340

Telomere repeat-binding protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
6474375 .. 6476670
2296 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g08340.6

Sequence Viewer

Length: 1062 bp
ATGAATATGCCTTTCAAGAAAAGGAGGCTTTTTGACCGTAGCACAGTTCCAAATCCTGATCAAGGTATTAGTAGAGAGGGATTCTTTGACTTGCGGGGGAAGGGAACCAAAGGAAATGCTTCTGCTTCGTGTTCAAAGATGCAAGCCACTGGGATGTCTTCTTCGGTAGGAGGTCAGCACTCATCTTTCCAATCAAGGAATTCACATGTGAAGCTCAGGATCAAGTCGTTTAGGGTTCCAGAGCTATTTATTGAGATTCCGGAGACGGCAACTGTTGGTTCATTAAAGAAAACAGTTATGGAAGCAGTGACAGCTGTACTTGGAGGTGGATTATGTGTTGGTGTACTTCTTCAAGGAAAGAAAGTGAGAGATGACAACAAAACTTTACTGCAAACAGGAATTTCTCAAGATGACCATCTAGATTCTGTGGGATTTTCCTTGGAACCCGACCCTTCCCGAACCCCTCCACCTTTATGTTCTGATGGTTCTCCCAGTATGCTTCCTTGTGATGATGTAAAGCCTTTAACAAGGTACCAACCGGGTCCTACTGGCGAACTACTACCTGAACCTCATGTGGCCAGTTTTGGGAGCTACATTGAAAGTGATCATGATTCAGCACCCTCTCCAACTGATATGTCAGCTGAAAAAAGCACAACAGATTCTAAAGCACTGGTTGCTGTTCCAGATGTGAGTGTGGATGCACTAGCTGTGGTTCCTGGGAACAGGAAATCAAGGCGGTTTGATATTGGACAGCGCCGAATTCGTCGACCTTTCTCTGTTACCGAAGTGGAAGCACTTGTCCAAGCGGTTGAGAAACTTGGTACCGGAAGGTGGCGTGATGTTAAACTCCGAGCTTTTGACAACGCTAAGCATCGAACATATGTGGATTTAAAGGATAAGTGGAAAACCCTAGTGCACACGGCTAGAATTTCTCCTCAACAGAGGCGGGGAGAGCCCGTCCCACAAGAGCTCTTGGACAGGGTCCTAACAGCTCACGCGTACTGGTCCCAGCAGCAAGCCAAACAACAGCTCAAACAGCCCGAGACTTGCCTTCTCGTCTAG

Protein Analysis

354

Amino Acids

38.85

Weight (kDa)

9.38

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 531, 821
AccB1I GGYRCC 2 cut(s) 531, 821
AccI GTMKAC 1 cut(s) 766
AccII CGCG 1 cut(s) 998
AccIII TCCGGA 1 cut(s) 259
AciI CCGC 4 cut(s) 94, 736, 806, 946
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 576
AcsI RAATTY 4 cut(s) 199, 399, 759, 927
AfaI GTAC 5 cut(s) 318, 345, 533, 823, 1001
AfiI CCNNNNNNNGG 3 cut(s) 62, 585, 831
AflIII ACRYGT 2 cut(s) 205, 996
AgsI TTSAA 4 cut(s) 16, 135, 353, 599
AjnI CCWGG 1 cut(s) 715
Alw21I GWGCWC 2 cut(s) 918, 972
Alw26I GTCTC 2 cut(s) 257, 1037
Alw44I GTGCAC 1 cut(s) 914
AlwI GGATC 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 1040
Aor13HI TCCGGA 1 cut(s) 259
AoxI GGCC 1 cut(s) 576
ApaLI GTGCAC 1 cut(s) 914
ApeKI GCWGC 1 cut(s) 1012
ApoI RAATTY 4 cut(s) 199, 399, 759, 927
Asp700I GAANNNNTTC 1 cut(s) 118
Asp718I GGTACC 2 cut(s) 531, 821
AspLEI GCGC 1 cut(s) 756
AspS9I GGNCC 3 cut(s) 542, 982, 1005
AsuC2I CCSGG 1 cut(s) 540
AvaI CYCGRG 1 cut(s) 1040
AvaII GGWCC 3 cut(s) 542, 982, 1005
BaeGI GKGCMC 1 cut(s) 918
BalI TGGCCA 1 cut(s) 578
BanI GGYRCC 2 cut(s) 531, 821
BanII GRGCYC 2 cut(s) 957, 972
BbsI GAAGAC 1 cut(s) 150
Bbv12I GWGCWC 2 cut(s) 918, 972
BbvI GCAGC 1 cut(s) 1024
BccI CCATC 2 cut(s) 423, 476
BceAI ACGGC 2 cut(s) 282, 936
BciT130I CCWGG 1 cut(s) 717
BclI TGATCA 2 cut(s) 58, 604
BcnI CCSGG 1 cut(s) 540
BcoDI GTCTC 2 cut(s) 257, 1037
BfaI CTAG 5 cut(s) 419, 704, 911, 924, 1060
BfoI RGCGCY 1 cut(s) 757
BisI GCNGC 1 cut(s) 1013
BlpI GCTNAGC 1 cut(s) 867
BlsI GCNGC 1 cut(s) 1014
Bme1390I CCNGG 2 cut(s) 540, 717
Bme18I GGWCC 3 cut(s) 542, 982, 1005
BmeT110I CYCGRG 1 cut(s) 1040
BmgT120I GGNCC 3 cut(s) 542, 982, 1005
BmiI GGNNCC 9 cut(s) 106, 237, 444, 533, 543, 714, 823, 983, 1007
BmrFI CCNGG 2 cut(s) 540, 717
BmrI ACTGGG 2 cut(s) 159, 486
BmsI GCATC 3 cut(s) 129, 688, 880
BmuI ACTGGG 2 cut(s) 159, 486
BpiI GAAGAC 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 215
Bpu1102I GCTNAGC 1 cut(s) 867
BpuEI CTTGAG 1 cut(s) 390
BpuMI CCSGG 1 cut(s) 540
BsaBI GATNNNNATC 1 cut(s) 414
BsaJI CCNNGG 2 cut(s) 438, 716
BsaWI WCCGGW 2 cut(s) 259, 824
BsaXI ACNNNNNCTCC 2 cut(s) 942, 972
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 585, 831
Bse1I ACTGG 6 cut(s) 154, 492, 553, 579, 675, 1007
Bse8I GATNNNNATC 1 cut(s) 414
BseAI TCCGGA 1 cut(s) 259
BseBI CCWGG 1 cut(s) 717
BseDI CCNNGG 2 cut(s) 438, 716
BseGI GGATG 2 cut(s) 159, 703
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 3 cut(s) 62, 585, 831
BseMII CTCAG 1 cut(s) 229
BseNI ACTGG 6 cut(s) 154, 492, 553, 579, 675, 1007
BseRI GAGGAG 1 cut(s) 924
BseSI GKGCMC 1 cut(s) 918
BseXI GCAGC 1 cut(s) 1024
BseYI CCCAGC 1 cut(s) 1008
Bsh1236I CGCG 1 cut(s) 998
BshFI GGCC 1 cut(s) 578
BshNI GGYRCC 2 cut(s) 531, 821
BsiHKAI GWGCWC 2 cut(s) 918, 972
BsiHKCI CYCGRG 1 cut(s) 1040
BsiSI CCGG 3 cut(s) 260, 539, 825
BslFI GGGAC 2 cut(s) 944, 991
BslI CCNNNNNNNGG 3 cut(s) 62, 585, 831
BsmAI GTCTC 2 cut(s) 257, 1037
BsmBI CGTCTC 1 cut(s) 257
BsmFI GGGAC 2 cut(s) 944, 991
BsnI GGCC 1 cut(s) 578
BsoBI CYCGRG 1 cut(s) 1040
Bsp1286I GDGCHC 3 cut(s) 918, 957, 972
Bsp13I TCCGGA 1 cut(s) 259
Bsp143I GATC 3 cut(s) 58, 219, 604
Bsp1720I GCTNAGC 1 cut(s) 867
BspACI CCGC 4 cut(s) 94, 736, 806, 946
BspANI GGCC 1 cut(s) 578
BspCNI CTCAG 1 cut(s) 228
BspEI TCCGGA 1 cut(s) 259
BspFNI CGCG 1 cut(s) 998
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 9 cut(s) 106, 237, 444, 533, 543, 714, 823, 983, 1007
BspPI GGATC 1 cut(s) 227
BspT107I GGYRCC 2 cut(s) 531, 821
BsrI ACTGG 6 cut(s) 154, 492, 553, 579, 675, 1007
BssECI CCNNGG 2 cut(s) 438, 716
BssMI GATC 3 cut(s) 58, 219, 604
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 717
Bst4CI ACNGT 4 cut(s) 38, 46, 274, 295
BstAPI GCANNNNNTGC 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 144, 1017
BstDEI CTNAG 2 cut(s) 215, 867
BstENI CCTNNNNNAGG 1 cut(s) 60
BstF5I GGATG 2 cut(s) 159, 703
BstFNI CGCG 1 cut(s) 998
BstH2I RGCGCY 1 cut(s) 757
BstHHI GCGC 1 cut(s) 756
BstKTI GATC 3 cut(s) 61, 222, 607
BstMAI GTCTC 2 cut(s) 257, 1037
BstMBI GATC 3 cut(s) 58, 219, 604
BstMWI GCNNNNNNNGC 4 cut(s) 311, 674, 952, 1036
BstNI CCWGG 1 cut(s) 717
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 2 cut(s) 538, 715
BstSLI GKGCMC 1 cut(s) 918
BstUI CGCG 1 cut(s) 998
BstV1I GCAGC 1 cut(s) 1024
BstV2I GAAGAC 1 cut(s) 150
BsuRI GGCC 1 cut(s) 578
BtsCI GGATG 2 cut(s) 159, 703
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 3 cut(s) 147, 312, 668
Cac8I GCNNGC 2 cut(s) 144, 1017
CciI TCATGA 1 cut(s) 607
CfoI GCGC 1 cut(s) 756
Cfr13I GGNCC 3 cut(s) 542, 982, 1005
Csp6I GTAC 5 cut(s) 317, 344, 532, 822, 1000
CviAII CATG 3 cut(s) 206, 572, 608
CviQI GTAC 5 cut(s) 317, 344, 532, 822, 1000
DdeI CTNAG 2 cut(s) 215, 867
DpnI GATC 3 cut(s) 60, 221, 606
DpnII GATC 3 cut(s) 58, 219, 604
DraI TTTAAA 1 cut(s) 891
EaeI YGGCCR 1 cut(s) 576
Ecl136II GAGCTC 1 cut(s) 970
Eco130I CCWWGG 1 cut(s) 438
Eco24I GRGCYC 2 cut(s) 957, 972
Eco47I GGWCC 3 cut(s) 542, 982, 1005
Eco53kI GAGCTC 1 cut(s) 970
Eco88I CYCGRG 1 cut(s) 1040
EcoICRI GAGCTC 1 cut(s) 970
EcoNI CCTNNNNNAGG 1 cut(s) 60
EcoO109I RGGNCCY 2 cut(s) 542, 982
EcoRI GAATTC 2 cut(s) 199, 759
EcoRII CCWGG 1 cut(s) 715
EcoT14I CCWWGG 1 cut(s) 438
EcoT38I GRGCYC 2 cut(s) 957, 972
ErhI CCWWGG 1 cut(s) 438
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 3 cut(s) 209, 575, 611
FaqI GGGAC 2 cut(s) 944, 991
FatI CATG 3 cut(s) 205, 571, 607
FauI CCCGC 2 cut(s) 87, 939
FauNDI CATATG 1 cut(s) 880
FbaI TGATCA 2 cut(s) 58, 604
FblI GTMKAC 1 cut(s) 766
Fnu4HI GCNGC 1 cut(s) 1013
FokI GGATG 2 cut(s) 166, 710
FriOI GRGCYC 2 cut(s) 957, 972
Fsp4HI GCNGC 1 cut(s) 1013
FspBI CTAG 5 cut(s) 419, 704, 911, 924, 1060
GlaI GCGC 1 cut(s) 755
GluI GCNGC 1 cut(s) 1013
GsaI CCCAGC 1 cut(s) 1012
HaeII RGCGCY 1 cut(s) 757
HaeIII GGCC 1 cut(s) 578
HapII CCGG 3 cut(s) 260, 539, 825
HhaI GCGC 1 cut(s) 756
Hin1II CATG 3 cut(s) 209, 575, 611
Hin6I GCGC 1 cut(s) 754
HinP1I GCGC 1 cut(s) 754
HincII GTYRAC 1 cut(s) 767
HindII GTYRAC 1 cut(s) 767
HinfI GANTC 5 cut(s) 81, 256, 422, 611, 659
HpaII CCGG 3 cut(s) 260, 539, 825
Hpy166II GTNNAC 3 cut(s) 344, 767, 916
Hpy188I TCNGA 2 cut(s) 481, 851
Hpy8I GTNNAC 3 cut(s) 344, 767, 916
Hpy99I CGWCG 1 cut(s) 768
HpyAV CCTTC 4 cut(s) 94, 462, 822, 1061
HpyCH4III ACNGT 4 cut(s) 38, 46, 274, 295
HpyCH4V TGCA 4 cut(s) 142, 391, 701, 916
HpyF10VI GCNNNNNNNGC 4 cut(s) 311, 674, 952, 1036
HpyF3I CTNAG 2 cut(s) 215, 867
Hsp92II CATG 3 cut(s) 209, 575, 611
HspAI GCGC 1 cut(s) 754
Kpn2I TCCGGA 1 cut(s) 259
KpnI GGTACC 2 cut(s) 535, 825
Ksp22I TGATCA 2 cut(s) 58, 604
Kzo9I GATC 3 cut(s) 58, 219, 604
LmnI GCTCC 1 cut(s) 588
Lsp1109I GCAGC 1 cut(s) 1024
LweI GCATC 3 cut(s) 129, 688, 880
MaeI CTAG 5 cut(s) 419, 704, 911, 924, 1060
MaeIII GTNAC 2 cut(s) 307, 778
MalI GATC 3 cut(s) 60, 221, 606
MboI GATC 3 cut(s) 58, 219, 604
MboII GAAGA 3 cut(s) 150, 153, 341
MhlI GDGCHC 3 cut(s) 918, 957, 972
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 4 cut(s) 199, 399, 759, 927
MluI ACGCGT 1 cut(s) 996
MluNI TGGCCA 1 cut(s) 578
MmeI TCCRAC 1 cut(s) 650
MnlI CCTC 9 cut(s) 18, 70, 164, 317, 474, 579, 631, 936, 945
Mox20I TGGCCA 1 cut(s) 578
MroI TCCGGA 1 cut(s) 259
MroXI GAANNNNTTC 1 cut(s) 118
MscI TGGCCA 1 cut(s) 578
MseI TTAA 4 cut(s) 284, 524, 843, 890
MslI CAYNNNNRTG 2 cut(s) 152, 472
Msp20I TGGCCA 1 cut(s) 578
MspA1I CMGCKG 2 cut(s) 314, 641
MspI CCGG 3 cut(s) 260, 539, 825
MspR9I CCNGG 2 cut(s) 540, 717
MvaI CCWGG 1 cut(s) 717
MvnI CGCG 1 cut(s) 998
MwoI GCNNNNNNNGC 4 cut(s) 311, 674, 952, 1036
NciI CCSGG 1 cut(s) 540
NdeI CATATG 1 cut(s) 880
NdeII GATC 3 cut(s) 58, 219, 604
NlaIII CATG 3 cut(s) 209, 575, 611
NlaIV GGNNCC 9 cut(s) 106, 237, 444, 533, 543, 714, 823, 983, 1007
NmuCI GTSAC 1 cut(s) 307
NspI RCATGY 1 cut(s) 209
PagI TCATGA 1 cut(s) 607
PciI ACATGT 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 5 cut(s) 81, 256, 422, 611, 659
PflFI GACNNNGTC 1 cut(s) 980
PkrI GCNGC 1 cut(s) 1014
PpuMI RGGWCCY 2 cut(s) 542, 982
PscI ACATGT 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 972
Psp5II RGGWCCY 2 cut(s) 542, 982
Psp6I CCWGG 1 cut(s) 715
PspFI CCCAGC 1 cut(s) 1008
PspGI CCWGG 1 cut(s) 715
PspN4I GGNNCC 9 cut(s) 106, 237, 444, 533, 543, 714, 823, 983, 1007
PspPI GGNCC 3 cut(s) 542, 982, 1005
PspPPI RGGWCCY 2 cut(s) 542, 982
PsyI GACNNNGTC 1 cut(s) 980
PvuII CAGCTG 2 cut(s) 314, 641
RsaI GTAC 5 cut(s) 318, 345, 533, 823, 1001
RsaNI GTAC 5 cut(s) 317, 344, 532, 822, 1000
RseI CAYNNNNRTG 2 cut(s) 152, 472
SacI GAGCTC 1 cut(s) 972
SalI GTCGAC 1 cut(s) 765
SaqAI TTAA 4 cut(s) 284, 524, 843, 890
SatI GCNGC 1 cut(s) 1013
Sau3AI GATC 3 cut(s) 58, 219, 604
Sau96I GGNCC 3 cut(s) 542, 982, 1005
ScrFI CCNGG 2 cut(s) 540, 717
SduI GDGCHC 3 cut(s) 918, 957, 972
SfaNI GCATC 3 cut(s) 129, 688, 880
SinI GGWCC 3 cut(s) 542, 982, 1005
SmiMI CAYNNNNRTG 2 cut(s) 152, 472
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
Sse9I AATT 4 cut(s) 199, 399, 759, 927
SsiI CCGC 4 cut(s) 94, 736, 806, 946
SspMI CTAG 5 cut(s) 419, 704, 911, 924, 1060
SstI GAGCTC 1 cut(s) 972
StyD4I CCNGG 2 cut(s) 538, 715
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 4 cut(s) 38, 46, 274, 295
TaqI TCGA 2 cut(s) 766, 874
TasI AATT 4 cut(s) 199, 399, 759, 927
TatI WGTACW 2 cut(s) 316, 343
TfiI GAWTC 5 cut(s) 81, 256, 422, 611, 659
Tru1I TTAA 4 cut(s) 284, 524, 843, 890
Tru9I TTAA 4 cut(s) 284, 524, 843, 890
TscAI CASTG 3 cut(s) 154, 312, 675
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 1 cut(s) 1012
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 2 cut(s) 17, 270
TspRI CASTG 3 cut(s) 154, 312, 675
Tth111I GACNNNGTC 1 cut(s) 980
VneI GTGCAC 1 cut(s) 914
VpaK11BI GGWCC 3 cut(s) 542, 982, 1005
XagI CCTNNNNNAGG 1 cut(s) 60
XapI RAATTY 4 cut(s) 199, 399, 759, 927
XbaI TCTAGA 1 cut(s) 418
XceI RCATGY 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 766
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 5 cut(s) 419, 704, 911, 924, 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.