Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006462

Physical Location & Seq

Genomic Coordinates Reverse (-)

33517534 .. 33519573

Gene Structure 2040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAAATGGGTGGCATGGGAAGAAGGACTTGCAACTACAAGCTTCAGTTACGAGTTACCTACCGTTTTCTTTTCACTTCTCCGACATCATGCAAGGTCTCGCCTTCTCTCACCGCTTGGTTACACTGGCCACTCACCGGTTGTCACTTGTTCCGGTCATCGGCATTTCAACCCGAACCTCAAGCTCGTCACTTTCATGTGTCTCAAAACTCCACTGCGTCCCAAGAATCAAATGTTGCTCTCAGAAGAACCAGTCTTTTGTTTTCAGCTACTGATGCAAAGAAGTTTGAAGAAGCATCAAAGATTGGAAATCTTGTTCCTCGTTACAAGTGCCTCTTTTCTGATCAACTTACGCCGGTTCTTGCGTATCGGTGTTTAGTGAAGGAGGATGACCGTGAGGCTCCAAGTTTTCTATTCGAGTCAGTGGAACAGAGCACTCAGGGGCGGTACAACGTTGTTGGAGCCCAACCAGCAATGGAAATTGTAGCCAAAGAGAATAAGGTGACTGCTCTGGACCATGAAGGAGGCTGTTCTTCGGACCAGTTTGTCGAGCAGGATCCCATAGCGGTTCCGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind

Protein Analysis

193

Amino Acids

21.56

Weight (kDa)

8.21

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Anth_synt_I_N	PF04715	115 - 172	5.9e-07	Anthranilate synthase component I, N terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55870 AT3G55870 AT3G55870 AT5G05730 AT5G05730
fragaria_vesca	FvH4_3g39390 FvH4_7g24230 FvH4_7g24230
malus_domestica	MD01G1149800.v1.1 MD07G1216200.v1.1
prunus_persica	Prupe.2G248100_v2.0.a1
pyrus_communis	pycom07g19850 pycom07g19860
rosa_chinensis	RchiOBHm_Chr1g0369821
rosa_laevigata	RLG00000027103
rosa_multiflora	Rmu_sc0007743.1_g000006 Rmu_sc0008140.1_g000006 Rmu_sc0039066.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287360
rosa_rugosa	Rorug01G0352500
rosa_samantha	Rh1AG361000 Rh1BG324700 Rh1CG337900 Rh1DG355100
rosa_wichuraiana	Rw0G015500 Rw1G031780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	545
AciI	CCGC	3 cut(s)	114, 445, 566
AclI	AACGTT	1 cut(s)	453
AclWI	GGATC	2 cut(s)	551, 564
AcoI	YGGCCR	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	29
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	2 cut(s)	137, 160
AgeI	ACCGGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	170, 290
AloI	GAACNNNNNNTCC	2 cut(s)	300, 332
AluBI	AGCT	3 cut(s)	43, 185, 269
AluI	AGCT	3 cut(s)	43, 185, 269
Alw21I	GWGCWC	1 cut(s)	437
Alw26I	GTCTC	2 cut(s)	103, 207
AlwI	GGATC	2 cut(s)	551, 564
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	128
AsiGI	ACCGGT	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	514, 538
AsuHPI	GGTGA	3 cut(s)	103, 127, 514
AvaII	GGWCC	2 cut(s)	514, 538
BalI	TGGCCA	1 cut(s)	130
BamHI	GGATCC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	437
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	2 cut(s)	103, 207
Bme18I	GGWCC	2 cut(s)	514, 538
BmgT120I	GGNCC	2 cut(s)	514, 538
BmiI	GGNNCC	4 cut(s)	402, 463, 558, 570
BmsI	GCATC	2 cut(s)	265, 305
BpuEI	CTTGAG	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	103
BsaWI	WCCGGW	2 cut(s)	137, 153
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 160
Bse118I	RCCGGY	2 cut(s)	137, 355
Bse1I	ACTGG	3 cut(s)	131, 252, 541
Bse3DI	GCAATG	1 cut(s)	480
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	2 cut(s)	137, 160
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	2 cut(s)	256, 452
BseNI	ACTGG	3 cut(s)	131, 252, 541
BshFI	GGCC	1 cut(s)	130
BshTI	ACCGGT	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	437
BsiSI	CCGG	3 cut(s)	138, 154, 356
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	137, 160
BsmAI	GTCTC	2 cut(s)	103, 207
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	130
Bso31I	GGTCTC	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	437, 466
Bsp143I	GATC	2 cut(s)	343, 556
BspACI	CCGC	3 cut(s)	114, 445, 566
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	255, 451
BspLI	GGNNCC	4 cut(s)	402, 463, 558, 570
BspPI	GGATC	2 cut(s)	551, 564
BspTNI	GGTCTC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	2 cut(s)	137, 355
BsrI	ACTGG	3 cut(s)	131, 252, 541
BssAI	RCCGGY	2 cut(s)	137, 355
BssMI	GATC	2 cut(s)	343, 556
Bst4CI	ACNGT	2 cut(s)	65, 395
BstDEI	CTNAG	2 cut(s)	242, 438
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	2 cut(s)	346, 559
BstMAI	GTCTC	2 cut(s)	103, 207
BstMBI	GATC	2 cut(s)	343, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 470
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	3 cut(s)	124, 213, 429
CaiI	CAGNNNCTG	1 cut(s)	272
Cfr10I	RCCGGY	2 cut(s)	137, 355
Cfr13I	GGNCC	2 cut(s)	514, 538
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	448
CspAI	ACCGGT	1 cut(s)	137
CviAII	CATG	4 cut(s)	16, 90, 197, 518
CviJI	RGCY	8 cut(s)	43, 130, 185, 269, 401, 464, 488, 528
CviKI_1	RGCY	8 cut(s)	43, 130, 185, 269, 401, 464, 488, 528
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	2 cut(s)	242, 438
DpnI	GATC	2 cut(s)	345, 558
DpnII	GATC	2 cut(s)	343, 556
DrdI	GACNNNNNNGTC	1 cut(s)	545
DseDI	GACNNNNNNGTC	1 cut(s)	545
EaeI	YGGCCR	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	466
Eco31I	GGTCTC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	514, 538
Eco57I	CTGAAG	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	466
FaeI	CATG	4 cut(s)	19, 93, 200, 521
FaiI	YATR	5 cut(s)	17, 91, 198, 519, 563
FalI	AAGNNNNNCTT	4 cut(s)	13, 45, 320, 352
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	4 cut(s)	15, 89, 196, 517
FbaI	TGATCA	1 cut(s)	343
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	1 cut(s)	466
HaeIII	GGCC	1 cut(s)	130
HapII	CCGG	3 cut(s)	138, 154, 356
HgaI	GACGC	1 cut(s)	207
Hin1II	CATG	4 cut(s)	19, 93, 200, 521
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	2 cut(s)	227, 419
HpaII	CCGG	3 cut(s)	138, 154, 356
HphI	GGTGA	3 cut(s)	103, 127, 514
Hpy188I	TCNGA	5 cut(s)	84, 245, 343, 538, 573
Hpy188III	TCNNGA	1 cut(s)	512
HpyAV	CCTTC	4 cut(s)	18, 114, 376, 515
HpyCH4III	ACNGT	2 cut(s)	65, 395
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	3 cut(s)	33, 93, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 470
HpyF3I	CTNAG	2 cut(s)	242, 438
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	4 cut(s)	19, 93, 200, 521
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	343, 556
LmnI	GCTCC	2 cut(s)	406, 461
LweI	GCATC	2 cut(s)	265, 305
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	7 cut(s)	48, 55, 120, 143, 188, 323, 502
MalI	GATC	2 cut(s)	345, 558
MboI	GATC	2 cut(s)	343, 556
MboII	GAAGA	4 cut(s)	33, 258, 302, 525
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	2 cut(s)	437, 466
MlsI	TGGCCA	1 cut(s)	130
MluCI	AATT	1 cut(s)	480
MluNI	TGGCCA	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	2 cut(s)	107, 439
MnlI	CCTC	6 cut(s)	189, 330, 344, 379, 391, 518
Mox20I	TGGCCA	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	130
MslI	CAYNNNNRTG	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	130
MspI	CCGG	3 cut(s)	138, 154, 356
MwoI	GCNNNNNNNGC	2 cut(s)	275, 470
NdeII	GATC	2 cut(s)	343, 556
NlaIII	CATG	4 cut(s)	19, 93, 200, 521
NlaIV	GGNNCC	4 cut(s)	402, 463, 558, 570
NmuCI	GTSAC	3 cut(s)	143, 188, 502
PfeI	GAWTC	1 cut(s)	227
PinAI	ACCGGT	1 cut(s)	137
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
Psp1406I	AACGTT	1 cut(s)	453
PspN4I	GGNNCC	4 cut(s)	402, 463, 558, 570
PspPI	GGNCC	2 cut(s)	514, 538
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	556
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	343, 556
Sau96I	GGNCC	2 cut(s)	514, 538
SchI	GAGTC	1 cut(s)	428
SduI	GDGCHC	2 cut(s)	437, 466
SetI	ASST	8 cut(s)	45, 62, 99, 181, 187, 271, 456, 504
SfaNI	GCATC	2 cut(s)	265, 305
SinI	GGWCC	2 cut(s)	514, 538
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	1 cut(s)	480
SsiI	CCGC	3 cut(s)	114, 445, 566
TaaI	ACNGT	2 cut(s)	65, 395
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	2 cut(s)	417, 549
TasI	AATT	1 cut(s)	480
TfiI	GAWTC	1 cut(s)	227
TscAI	CASTG	3 cut(s)	131, 220, 429
TseFI	GTSAC	3 cut(s)	143, 188, 502
Tsp45I	GTSAC	3 cut(s)	143, 188, 502
TspDTI	ATGAA	2 cut(s)	185, 534
TspRI	CASTG	3 cut(s)	131, 220, 429
VpaK11BI	GGWCC	2 cut(s)	514, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.