Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039066.1

Orthogroup ID

OG0006462

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 511

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039066.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 401 bp

tgcaagacggtctcacttgctgggacgctctgcgagctgcattgcctgttggaactgtcagtggtgcaccaaaggtgaaggccatggagttaatcgatcagttggaggtaaacaggcgtggcccatacagcggcggatttggagcagtatcgttttccggtgatatggacattgcactagctctgaggaccatggtgtttccaacagcagcccgttttgacacaatgtactcttacaaaaatggcaacacccgtcgggagtgggttgcatatcttcaagctggtgctggtatagttgctgacagtgatcctgatgatgaaaaccaagagtgccagaacaaagctgctggtcttgctcgtgccattgacttggctgaggccgcatttgttcatgaatgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind

Protein Analysis

132

Amino Acids

14.16

Weight (kDa)

4.64

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55870 AT3G55870 AT3G55870 AT5G05730 AT5G05730
fragaria_vesca	FvH4_3g39390 FvH4_7g24230 FvH4_7g24230
malus_domestica	MD01G1149800.v1.1 MD07G1216200.v1.1
prunus_persica	Prupe.2G248100_v2.0.a1
pyrus_communis	pycom07g19850 pycom07g19860
rosa_chinensis	RchiOBHm_Chr1g0369821
rosa_laevigata	RLG00000027103
rosa_multiflora	Rmu_sc0007743.1_g000006 Rmu_sc0008140.1_g000006 Rmu_sc0039066.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287360
rosa_rugosa	Rorug01G0352500
rosa_samantha	Rh1AG361000 Rh1BG324700 Rh1CG337900 Rh1DG355100
rosa_wichuraiana	Rw0G015500 Rw1G031780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	131, 134, 380
AclWI	GGATC	1 cut(s)	301
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	277
AluBI	AGCT	4 cut(s)	37, 181, 280, 343
AluI	AGCT	4 cut(s)	37, 181, 280, 343
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	16
Alw44I	GTGCAC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	301
AoxI	GGCC	3 cut(s)	80, 120, 377
ApaLI	GTGCAC	1 cut(s)	65
ApeKI	GCWGC	3 cut(s)	37, 208, 343
AspS9I	GGNCC	2 cut(s)	121, 188
AsuHPI	GGTGA	2 cut(s)	87, 172
AvaII	GGWCC	1 cut(s)	188
BaeGI	GKGCMC	1 cut(s)	69
BauI	CACGAG	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	374
BbvI	GCAGC	3 cut(s)	24, 220, 330
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	178
BisI	GCNGC	5 cut(s)	38, 132, 209, 344, 380
BlsI	GCNGC	5 cut(s)	39, 133, 210, 345, 381
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	121, 188
Bpu10I	CCTNAGC	1 cut(s)	374
Bsa29I	ATCGAT	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	2 cut(s)	83, 191
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse3DI	GCAATG	2 cut(s)	40, 170
BseCI	ATCGAT	1 cut(s)	95
BseDI	CCNNGG	2 cut(s)	83, 191
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMI	GCAATG	2 cut(s)	40, 170
BseMII	CTCAG	2 cut(s)	175, 365
BseSI	GKGCMC	1 cut(s)	69
BseXI	GCAGC	3 cut(s)	24, 220, 330
BseYI	CCCAGC	1 cut(s)	20
BshFI	GGCC	3 cut(s)	82, 122, 379
BshVI	ATCGAT	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	3 cut(s)	82, 122, 379
Bso31I	GGTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	96, 306
Bsp19I	CCATGG	2 cut(s)	83, 191
BspACI	CCGC	3 cut(s)	131, 134, 380
BspANI	GGCC	3 cut(s)	82, 122, 379
BspCNI	CTCAG	2 cut(s)	176, 366
BspDI	ATCGAT	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	390
BspPI	GGATC	1 cut(s)	301
BspTNI	GGTCTC	1 cut(s)	16
BsrDI	GCAATG	2 cut(s)	40, 170
BssECI	CCNNGG	2 cut(s)	83, 191
BssMI	GATC	2 cut(s)	96, 306
BssSI	CACGAG	1 cut(s)	356
BssT1I	CCWWGG	2 cut(s)	83, 191
Bst2BI	CACGAG	1 cut(s)	356
Bst4CI	ACNGT	3 cut(s)	10, 57, 304
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	184, 374
BstDSI	CCRYGG	2 cut(s)	83, 191
BstKTI	GATC	2 cut(s)	99, 309
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	2 cut(s)	96, 306
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 128, 352, 379
BstSLI	GKGCMC	1 cut(s)	69
BstV1I	GCAGC	3 cut(s)	24, 220, 330
BstXI	CCANNNNNNTGG	1 cut(s)	369
Bsu15I	ATCGAT	1 cut(s)	95
BsuRI	GGCC	3 cut(s)	82, 122, 379
BsuTUI	ATCGAT	1 cut(s)	95
BtgI	CCRYGG	2 cut(s)	83, 191
BtsIMutI	CAGTG	2 cut(s)	66, 309
Cac8I	GCNNGC	1 cut(s)	35
CciI	TCATGA	1 cut(s)	390
Cfr13I	GGNCC	2 cut(s)	121, 188
ClaI	ATCGAT	1 cut(s)	95
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	3 cut(s)	84, 192, 391
CviJI	RGCY	9 cut(s)	37, 82, 122, 181, 211, 280, 343, 373, 379
CviKI_1	RGCY	9 cut(s)	37, 82, 122, 181, 211, 280, 343, 373, 379
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	2 cut(s)	184, 374
DpnI	GATC	2 cut(s)	98, 308
DpnII	GATC	2 cut(s)	96, 306
EciI	GGCGGA	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	83, 191
Eco31I	GGTCTC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	188
EcoT14I	CCWWGG	2 cut(s)	83, 191
ErhI	CCWWGG	2 cut(s)	83, 191
FaeI	CATG	3 cut(s)	87, 195, 394
FaiI	YATR	7 cut(s)	85, 126, 166, 193, 270, 292, 392
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	3 cut(s)	83, 191, 390
Fnu4HI	GCNGC	5 cut(s)	38, 132, 209, 344, 380
Fsp4HI	GCNGC	5 cut(s)	38, 132, 209, 344, 380
FspBI	CTAG	1 cut(s)	178
GluI	GCNGC	5 cut(s)	38, 132, 209, 344, 380
GsaI	CCCAGC	1 cut(s)	24
HaeIII	GGCC	3 cut(s)	82, 122, 379
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	34
Hin1II	CATG	3 cut(s)	87, 195, 394
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	2 cut(s)	87, 172
Hpy166II	GTNNAC	2 cut(s)	67, 111
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	3 cut(s)	256, 310, 391
Hpy8I	GTNNAC	2 cut(s)	67, 111
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	3 cut(s)	10, 57, 304
HpyCH4V	TGCA	5 cut(s)	3, 40, 67, 175, 268
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 128, 352, 379
HpyF3I	CTNAG	2 cut(s)	184, 374
Hsp92II	CATG	3 cut(s)	87, 195, 394
Kzo9I	GATC	2 cut(s)	96, 306
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	9 cut(s)	6, 59, 99, 171, 266, 272, 323, 332, 346
Lsp1109I	GCAGC	3 cut(s)	24, 220, 330
MaeI	CTAG	1 cut(s)	178
MalI	GATC	2 cut(s)	98, 308
MboI	GATC	2 cut(s)	96, 306
MboII	GAAGA	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	69
MmeI	TCCRAC	3 cut(s)	30, 83, 226
MnlI	CCTC	3 cut(s)	99, 179, 369
MseI	TTAA	1 cut(s)	91
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	400
MwoI	GCNNNNNNNGC	4 cut(s)	34, 128, 352, 379
NcoI	CCATGG	2 cut(s)	83, 191
NdeII	GATC	2 cut(s)	96, 306
NlaIII	CATG	3 cut(s)	87, 195, 394
PagI	TCATGA	1 cut(s)	390
PctI	GAATGC	1 cut(s)	400
PkrI	GCNGC	5 cut(s)	39, 133, 210, 345, 381
PspFI	CCCAGC	1 cut(s)	20
PspPI	GGNCC	2 cut(s)	121, 188
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	91
SatI	GCNGC	5 cut(s)	38, 132, 209, 344, 380
Sau3AI	GATC	2 cut(s)	96, 306
Sau96I	GGNCC	2 cut(s)	121, 188
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	6 cut(s)	39, 77, 110, 183, 282, 345
SinI	GGWCC	1 cut(s)	188
SsiI	CCGC	3 cut(s)	131, 134, 380
SspMI	CTAG	1 cut(s)	178
StyI	CCWWGG	2 cut(s)	83, 191
TaaI	ACNGT	3 cut(s)	10, 57, 304
TaqI	TCGA	1 cut(s)	95
TatI	WGTACW	1 cut(s)	227
TauI	GCSGC	2 cut(s)	134, 382
Tru1I	TTAA	1 cut(s)	91
Tru9I	TTAA	1 cut(s)	91
TscAI	CASTG	2 cut(s)	66, 309
TseI	GCWGC	3 cut(s)	37, 208, 343
TspDTI	ATGAA	2 cut(s)	332, 379
TspRI	CASTG	2 cut(s)	66, 309
VneI	GTGCAC	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	188
XspI	CTAG	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.