Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006462

Physical Location & Seq

Genomic Coordinates Forward (+)

22109097 .. 22110003

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19850.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCCAGCCCTCTGCTTCTCCCAGCGCCCTGTGCTGCCGAGCCAGCGGCTGTCTCGGGTTCCGGTCATCGGCATTTCGAGTAGAAACTCGAGCTCACTTGCATGCGTCCCCAGGACGAAATGCTGCGCTCTCTCGAATCAGTCGTTAGTTACTGATGATGCAAGCAAGTTTGTGGAAGCTTCAAAGAAAGGAAATTTGGTTCCTCTTTACAAATGTATTTTCTCTGACCAGCTCACTCCGGTTCTTGCATATCGATGCTTGGTTAAGGAGGACGATCGAGAGGCGCCAAGCTTTCTGTTTGAATCAGTGGAGCAAAACTTGCAGAGGGGCGTTTCAGCGTTGTTGGTTCTCAACCAACAATGGAAATTGTGGCAAAAGAAAATAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind

Protein Analysis

130

Amino Acids

14.49

Weight (kDa)

9.47

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55870 AT3G55870 AT3G55870 AT5G05730 AT5G05730
fragaria_vesca	FvH4_3g39390 FvH4_7g24230 FvH4_7g24230
malus_domestica	MD01G1149800.v1.1 MD07G1216200.v1.1
prunus_persica	Prupe.2G248100_v2.0.a1
pyrus_communis	pycom07g19850 pycom07g19860
rosa_chinensis	RchiOBHm_Chr1g0369821
rosa_laevigata	RLG00000027103
rosa_multiflora	Rmu_sc0007743.1_g000006 Rmu_sc0008140.1_g000006 Rmu_sc0039066.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287360
rosa_rugosa	Rorug01G0352500
rosa_samantha	Rh1AG361000 Rh1BG324700 Rh1CG337900 Rh1DG355100
rosa_wichuraiana	Rw0G015500 Rw1G031780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AciI	CCGC	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	183, 302
AjnI	CCWGG	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
AluBI	AGCT	4 cut(s)	93, 179, 232, 291
AluI	AGCT	4 cut(s)	93, 179, 232, 291
Alw21I	GWGCWC	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	57
AlwNI	CAGNNNCTG	1 cut(s)	49
Ama87I	CYCGRG	2 cut(s)	54, 88
ApeKI	GCWGC	2 cut(s)	34, 123
ApoI	RAATTY	1 cut(s)	193
AspLEI	GCGC	3 cut(s)	27, 128, 286
AvaI	CYCGRG	2 cut(s)	54, 88
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	21, 110
BciT130I	CCWGG	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	57
BfoI	RGCGCY	2 cut(s)	28, 287
BisI	GCNGC	3 cut(s)	35, 47, 124
BlsI	GCNGC	3 cut(s)	36, 48, 125
Bme1390I	CCNGG	1 cut(s)	112
BmeT110I	CYCGRG	2 cut(s)	54, 88
BmiI	GGNNCC	3 cut(s)	60, 201, 285
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	148, 245
Bsa29I	ATCGAT	1 cut(s)	253
BsaHI	GRCGYC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	110
BsaWI	WCCGGW	2 cut(s)	61, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	110
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	21, 110
BseYI	CCCAGC	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	277
BshNI	GGYRCC	1 cut(s)	283
BshVI	ATCGAT	1 cut(s)	253
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	95
BsiHKCI	CYCGRG	2 cut(s)	54, 88
BsiSI	CCGG	2 cut(s)	62, 239
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	92
BsoBI	CYCGRG	2 cut(s)	54, 88
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	1 cut(s)	46
BspDI	ATCGAT	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	60, 201, 285
BspT107I	GGYRCC	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	274
BssNI	GRCGYC	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	112
BstACI	GRCGYC	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	319
BstC8I	GCNNGC	4 cut(s)	6, 44, 103, 163
BstH2I	RGCGCY	2 cut(s)	28, 287
BstHHI	GCGC	3 cut(s)	27, 128, 286
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	274
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 43, 319
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	110
BstV1I	GCAGC	2 cut(s)	21, 110
Bsu15I	ATCGAT	1 cut(s)	253
BsuTUI	ATCGAT	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	4 cut(s)	6, 44, 103, 163
CaiI	CAGNNNCTG	1 cut(s)	49
CfoI	GCGC	3 cut(s)	27, 128, 286
ClaI	ATCGAT	1 cut(s)	253
CseI	GACGC	1 cut(s)	94
CviAII	CATG	1 cut(s)	102
CviJI	RGCY	7 cut(s)	8, 42, 49, 93, 179, 232, 291
CviKI_1	RGCY	7 cut(s)	8, 42, 49, 93, 179, 232, 291
DinI	GGCGCC	1 cut(s)	285
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Ecl136II	GAGCTC	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	95
Eco53kI	GAGCTC	1 cut(s)	93
Eco88I	CYCGRG	2 cut(s)	54, 88
EcoICRI	GAGCTC	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	110
EcoT38I	GRGCYC	1 cut(s)	95
EgeI	GGCGCC	1 cut(s)	285
EheI	GGCGCC	1 cut(s)	285
FaeI	CATG	1 cut(s)	105
FaiI	YATR	2 cut(s)	103, 250
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	1 cut(s)	101
Fnu4HI	GCNGC	3 cut(s)	35, 47, 124
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	3 cut(s)	35, 47, 124
GlaI	GCGC	3 cut(s)	26, 127, 285
GluI	GCNGC	3 cut(s)	35, 47, 124
GsaI	CCCAGC	1 cut(s)	25
HaeII	RGCGCY	2 cut(s)	28, 287
HapII	CCGG	2 cut(s)	62, 239
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	3 cut(s)	27, 128, 286
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	1 cut(s)	105
Hin6I	GCGC	3 cut(s)	25, 126, 284
HinP1I	GCGC	3 cut(s)	25, 126, 284
HindIII	AAGCTT	2 cut(s)	177, 289
HinfI	GANTC	2 cut(s)	136, 302
HpaII	CCGG	2 cut(s)	62, 239
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	2 cut(s)	133, 278
HpyCH4V	TGCA	4 cut(s)	101, 161, 248, 322
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 43, 319
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	1 cut(s)	105
HspAI	GCGC	3 cut(s)	25, 126, 284
KasI	GGCGCC	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	9 cut(s)	18, 35, 42, 56, 75, 97, 124, 242, 252
Lsp1109I	GCAGC	2 cut(s)	21, 110
LweI	GCATC	2 cut(s)	148, 245
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	2 cut(s)	193, 365
Mly113I	GGCGCC	1 cut(s)	284
MnlI	CCTC	5 cut(s)	20, 213, 262, 274, 318
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	100, 253
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	2 cut(s)	62, 239
MspR9I	CCNGG	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	3 cut(s)	31, 43, 319
NarI	GGCGCC	1 cut(s)	284
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	105
NlaIV	GGNNCC	3 cut(s)	60, 201, 285
NmeAIII	GCCGAG	1 cut(s)	63
NspI	RCATGY	1 cut(s)	105
PaeI	GCATGC	1 cut(s)	105
PaeR7I	CTCGAG	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	136, 302
PkrI	GCNGC	3 cut(s)	36, 48, 125
Ple19I	CGATCG	1 cut(s)	277
PluTI	GGCGCC	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	110
PspFI	CCCAGC	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	3 cut(s)	60, 201, 285
PspXI	VCTCGAGB	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	49
PvuI	CGATCG	1 cut(s)	277
RseI	CAYNNNNRTG	2 cut(s)	100, 253
SacI	GAGCTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	3 cut(s)	35, 47, 124
Sau3AI	GATC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	5 cut(s)	95, 181, 234, 293, 389
SfaNI	GCATC	2 cut(s)	148, 245
SfoI	GGCGCC	1 cut(s)	285
Sfr274I	CTCGAG	1 cut(s)	88
SlaI	CTCGAG	1 cut(s)	88
SmiMI	CAYNNNNRTG	2 cut(s)	100, 253
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
SphI	GCATGC	1 cut(s)	105
Sse9I	AATT	2 cut(s)	193, 365
SsiI	CCGC	1 cut(s)	46
SspDI	GGCGCC	1 cut(s)	283
SstI	GAGCTC	1 cut(s)	95
StyD4I	CCNGG	1 cut(s)	110
TaqI	TCGA	5 cut(s)	77, 89, 134, 253, 277
TasI	AATT	2 cut(s)	193, 365
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	136, 302
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	2 cut(s)	34, 123
TspRI	CASTG	1 cut(s)	312
XapI	RAATTY	1 cut(s)	193
XceI	RCATGY	1 cut(s)	105
XhoI	CTCGAG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.