Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006462

Physical Location & Seq

Genomic Coordinates Forward (+)

46941873 .. 46952501

Gene Structure 10629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0352500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGTATATAATCAAAAAGGATGAACCACTTCAGTTGATGTTCTTCGTCCTAGCCGGATATGTAGTCACCGAAAGTTATCCTCATTTTGTTGTTCGTATAGGAGAATTTTGTGGACAAGAACTTCTAGATTGGCCATCCACTACCTCATTTCCGGATCCTATGGAATTTCCCACAGCCCTCGAGTCTGCTAGGGCCAATGGTGATGTTAGAGTCCTTGCTCTGATGTTGGAAGACTGGGTGAGTGTAGTCAATAGATTTGCGTTTGGCAACCACAAGAGGAGAATTAAGCTGGCGGTGGAAAAGAAGAGTAAAGAGTTAGACTTGTGGTTATTTAAATCTGGTATCCCTAGTAGAAGGAAAAATGAGATAATGGAAAGGGTACGGCAAGAACTTGAAGAATATAGGGATGTTGATGTCGAGAATGTCCTCCCTATCCTTCCTGTGGAACTTCAAAGTTATATCAAAAGTTGTTTGCCAATTACTCGGTTAAAGAAAGTGCCAATGCTTAGAAGTGTCGATGAAGAAGTGTTAAGAGCAATATGTGAACATATGAAACCCATCAAGGATACAAATATTCGTGGGAGGCTATATCATTCTCGCGATGAGGAACCACTTGAAAAGATGATATTCATTGTTGAGGGGGAGCTAGGTGTTGAAAGAAGAAACTCTGCTACTCCGGACCTTTTATATGAAGGAGACTTCTATGGAGAGGAACTTGTACATTGGGTATCAGTATCACATACATCTTTTCCTGCCAGATTACCCTTATCAGTCGATTCTGCTTATGTCACCAACAATGATAGCATCCTTATTCTCATGGCTGACGACTTGAAGAGTATAGTATCTAAGTTCAGGTTGCATTTCAGCAAGGAGATAACCCTTCCACCTGATACTCAGCCAGAGCTTCTGAGATCTGTTCAGTTGACTATGCTAAAGAAAGTGCCTCGGTTTCAAACTATGGACGAAGAAATGTTGAAAGCAATCTCTGTGCTTCTGAAGCCTATAACCTATACTGATGGGATGTATATAATCAAAAAGGATGAACCACTTCAGTTGATGTTCTTCGTCCTAGCCGGATATGTAGTCACCGAAAGTTATCCTCACGCTGTTGTTCGTGTAGGAGAATTCTGTGGACAAGAACTTCTTGAATGGGCATCAACTATCTCCTTTCCTGCCAAATTACCCACAGCACTCGAGTCTGCTAGGGCCAATGGTGATGTTAGAGTCCTTGCCCTCACGTCTGACGATTGGATTACACTAATCCATTGGCTGCTAGGGCCAATGATAATGTTAGCAGTTAAGGGAAGAGAGTGTGGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004049 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005950 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009889 GO:0009987 GO:0010600 GO:0010817 GO:0016053 GO:0016829 GO:0016830 GO:0016833 GO:0018130 GO:0019222 GO:0019438 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0032991 GO:0034641 GO:0042401 GO:0042430 GO:0042435 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0046885 GO:0050789 GO:0050794 GO:0065007 GO:0065008 GO:0071704 GO:0090354 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00400 ko00405 ko01100 ko01110 ko01130 ko01230 ko02024 ko02025 map00400 map00405 map01100 map01110 map01130 map01230 map02024 map02025

Pfam Domains

Protein Families

Anth_synt_I_N Chorismate_bind

Protein Analysis

440

Amino Acids

50.47

Weight (kDa)

5.56

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55870 AT3G55870 AT3G55870 AT5G05730 AT5G05730
fragaria_vesca	FvH4_3g39390 FvH4_7g24230 FvH4_7g24230
malus_domestica	MD01G1149800.v1.1 MD07G1216200.v1.1
prunus_persica	Prupe.2G248100_v2.0.a1
pyrus_communis	pycom07g19850 pycom07g19860
rosa_chinensis	RchiOBHm_Chr1g0369821
rosa_laevigata	RLG00000027103
rosa_multiflora	Rmu_sc0007743.1_g000006 Rmu_sc0008140.1_g000006 Rmu_sc0039066.1_g000001
rosa_roxburghii	Rroxscaffold_4G00287360
rosa_rugosa	Rorug01G0352500
rosa_samantha	Rh1AG361000 Rh1BG324700 Rh1CG337900 Rh1DG355100
rosa_wichuraiana	Rw0G015500 Rw1G031780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	600
AccIII	TCCGGA	2 cut(s)	151, 676
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	2 cut(s)	149, 162
AcoI	YGGCCR	1 cut(s)	131
AcsI	RAATTY	3 cut(s)	104, 164, 1124
AcuI	CTGAAG	3 cut(s)	14, 1016, 1034
AfaI	GTAC	2 cut(s)	381, 720
AfiI	CCNNNNNNNGG	1 cut(s)	442
AgsI	TTSAA	8 cut(s)	395, 452, 617, 656, 832, 953, 976, 1148
AjiI	CACGTC	1 cut(s)	1239
AluBI	AGCT	3 cut(s)	289, 646, 904
AluI	AGCT	3 cut(s)	289, 646, 904
Alw26I	GTCTC	1 cut(s)	690
AlwI	GGATC	2 cut(s)	149, 162
Ama87I	CYCGRG	2 cut(s)	179, 1193
Aor13HI	TCCGGA	2 cut(s)	151, 676
AoxI	GGCC	4 cut(s)	131, 192, 1206, 1277
ApeKI	GCWGC	1 cut(s)	1270
ApoI	RAATTY	3 cut(s)	104, 164, 1124
Asp700I	GAANNNNTTC	2 cut(s)	27, 1047
AspS9I	GGNCC	4 cut(s)	192, 679, 1206, 1277
AsuHPI	GGTGA	6 cut(s)	58, 212, 250, 781, 1078, 1226
AvaI	CYCGRG	2 cut(s)	179, 1193
AvaII	GGWCC	1 cut(s)	679
BalI	TGGCCA	1 cut(s)	133
BamHI	GGATCC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	1257
BccI	CCATC	3 cut(s)	142, 566, 1010
BceAI	ACGGC	1 cut(s)	398
BciVI	GTATCC	2 cut(s)	353, 559
BcoDI	GTCTC	1 cut(s)	690
BfaI	CTAG	8 cut(s)	50, 125, 189, 348, 647, 1070, 1203, 1274
BfuI	GTATCC	2 cut(s)	353, 559
BglII	AGATCT	1 cut(s)	911
BisI	GCNGC	1 cut(s)	1271
BlsI	GCNGC	1 cut(s)	1272
Bme18I	GGWCC	1 cut(s)	679
BmeT110I	CYCGRG	2 cut(s)	179, 1193
BmgBI	CACGTC	1 cut(s)	1239
BmgT120I	GGNCC	4 cut(s)	192, 679, 1206, 1277
BmiI	GGNNCC	2 cut(s)	156, 609
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	2 cut(s)	813, 1163
BmuI	ACTGGG	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	944
BsaWI	WCCGGW	2 cut(s)	151, 676
Bsc4I	CCNNNNNNNGG	1 cut(s)	442
Bse1I	ACTGG	1 cut(s)	239
BseAI	TCCGGA	2 cut(s)	151, 676
BseDI	CCNNGG	1 cut(s)	944
BseGI	GGATG	6 cut(s)	25, 134, 412, 804, 1026, 1045
BseLI	CCNNNNNNNGG	1 cut(s)	442
BseMII	CTCAG	2 cut(s)	899, 908
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	1257
Bsh1236I	CGCG	1 cut(s)	600
BshFI	GGCC	4 cut(s)	133, 194, 1208, 1279
BsiHKCI	CYCGRG	2 cut(s)	179, 1193
BsiSI	CCGG	4 cut(s)	54, 152, 677, 1074
BslI	CCNNNNNNNGG	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	690
BsnI	GGCC	4 cut(s)	133, 194, 1208, 1279
BsoBI	CYCGRG	2 cut(s)	179, 1193
Bsp13I	TCCGGA	2 cut(s)	151, 676
Bsp1407I	TGTACA	1 cut(s)	718
Bsp143I	GATC	2 cut(s)	154, 911
Bsp68I	TCGCGA	1 cut(s)	600
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	4 cut(s)	133, 194, 1208, 1279
BspCNI	CTCAG	2 cut(s)	900, 907
BspEI	TCCGGA	2 cut(s)	151, 676
BspFNI	CGCG	1 cut(s)	600
BspLI	GGNNCC	2 cut(s)	156, 609
BspPI	GGATC	2 cut(s)	149, 162
BsrGI	TGTACA	1 cut(s)	718
BsrI	ACTGG	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	944
BssMI	GATC	2 cut(s)	154, 911
Bst6I	CTCTTC	3 cut(s)	299, 827, 1300
BstAUI	TGTACA	1 cut(s)	718
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	4 cut(s)	506, 846, 894, 908
BstF5I	GGATG	6 cut(s)	25, 134, 412, 804, 1026, 1045
BstFNI	CGCG	1 cut(s)	600
BstKTI	GATC	2 cut(s)	157, 914
BstMAI	GTCTC	1 cut(s)	690
BstMBI	GATC	2 cut(s)	154, 911
BstMWI	GCNNNNNNNGC	2 cut(s)	997, 1276
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	1 cut(s)	1257
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	154, 911
BstYI	RGATCY	2 cut(s)	154, 911
BsuI	GTATCC	2 cut(s)	353, 559
BsuRI	GGCC	4 cut(s)	133, 194, 1208, 1279
BtgZI	GCGATG	1 cut(s)	615
BtrI	CACGTC	1 cut(s)	1239
BtsCI	GGATG	6 cut(s)	25, 134, 412, 804, 1026, 1045
BtuMI	TCGCGA	1 cut(s)	600
Cac8I	GCNNGC	1 cut(s)	291
Cfr13I	GGNCC	4 cut(s)	192, 679, 1206, 1277
Csp6I	GTAC	2 cut(s)	380, 719
CspCI	CAANNNNNGTGG	4 cut(s)	15, 50, 1035, 1070
CviAII	CATG	1 cut(s)	817
CviQI	GTAC	2 cut(s)	380, 719
DdeI	CTNAG	4 cut(s)	506, 846, 894, 908
DpnI	GATC	2 cut(s)	156, 913
DpnII	GATC	2 cut(s)	154, 911
DraI	TTTAAA	1 cut(s)	334
EaeI	YGGCCR	1 cut(s)	131
Eam1104I	CTCTTC	3 cut(s)	299, 827, 1300
EarI	CTCTTC	3 cut(s)	299, 827, 1300
Eco47I	GGWCC	1 cut(s)	679
Eco57I	CTGAAG	3 cut(s)	14, 1016, 1034
Eco88I	CYCGRG	2 cut(s)	179, 1193
EcoRI	GAATTC	1 cut(s)	1124
FaeI	CATG	1 cut(s)	820
FalI	AAGNNNNNCTT	2 cut(s)	1128, 1160
FatI	CATG	1 cut(s)	816
FauNDI	CATATG	1 cut(s)	549
Fnu4HI	GCNGC	1 cut(s)	1271
FokI	GGATG	6 cut(s)	32, 121, 419, 791, 1033, 1052
Fsp4HI	GCNGC	1 cut(s)	1271
FspBI	CTAG	8 cut(s)	50, 125, 189, 348, 647, 1070, 1203, 1274
GluI	GCNGC	1 cut(s)	1271
HaeIII	GGCC	4 cut(s)	133, 194, 1208, 1279
HapII	CCGG	4 cut(s)	54, 152, 677, 1074
Hin1II	CATG	1 cut(s)	820
HincII	GTYRAC	1 cut(s)	924
HindII	GTYRAC	1 cut(s)	924
HinfI	GANTC	5 cut(s)	182, 210, 776, 1196, 1224
HpaII	CCGG	4 cut(s)	54, 152, 677, 1074
HphI	GGTGA	6 cut(s)	58, 212, 250, 781, 1078, 1226
Hpy166II	GTNNAC	4 cut(s)	113, 545, 924, 1133
Hpy188I	TCNGA	4 cut(s)	222, 909, 996, 1243
Hpy188III	TCNNGA	6 cut(s)	125, 152, 418, 599, 677, 1145
Hpy8I	GTNNAC	4 cut(s)	113, 545, 924, 1133
HpyAV	CCTTC	4 cut(s)	348, 446, 686, 890
HpyCH4IV	ACGT	1 cut(s)	1238
HpyCH4V	TGCA	1 cut(s)	859
HpyF10VI	GCNNNNNNNGC	2 cut(s)	997, 1276
HpyF3I	CTNAG	4 cut(s)	506, 846, 894, 908
HpySE526I	ACGT	1 cut(s)	1238
Hsp92II	CATG	1 cut(s)	820
Kpn2I	TCCGGA	2 cut(s)	151, 676
Kzo9I	GATC	2 cut(s)	154, 911
LmnI	GCTCC	1 cut(s)	643
Lsp1109I	GCAGC	1 cut(s)	1257
LweI	GCATC	2 cut(s)	813, 1163
MaeI	CTAG	8 cut(s)	50, 125, 189, 348, 647, 1070, 1203, 1274
MaeII	ACGT	1 cut(s)	1238
MaeIII	GTNAC	3 cut(s)	64, 787, 1084
MalI	GATC	2 cut(s)	156, 913
MboI	GATC	2 cut(s)	154, 911
MflI	RGATCY	2 cut(s)	154, 911
MlsI	TGGCCA	1 cut(s)	133
MluCI	AATT	6 cut(s)	104, 164, 282, 477, 1124, 1178
MluNI	TGGCCA	1 cut(s)	133
MlyI	GAGTC	4 cut(s)	191, 219, 1205, 1233
MmeI	TCCRAC	1 cut(s)	207
Mox20I	TGGCCA	1 cut(s)	133
MroI	TCCGGA	2 cut(s)	151, 676
MroXI	GAANNNNTTC	2 cut(s)	27, 1047
MscI	TGGCCA	1 cut(s)	133
MseI	TTAA	6 cut(s)	285, 333, 488, 530, 1299, 1321
Msp20I	TGGCCA	1 cut(s)	133
MspI	CCGG	4 cut(s)	54, 152, 677, 1074
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	997, 1276
NdeI	CATATG	1 cut(s)	549
NdeII	GATC	2 cut(s)	154, 911
NlaIII	CATG	1 cut(s)	820
NlaIV	GGNNCC	2 cut(s)	156, 609
NmuCI	GTSAC	3 cut(s)	64, 787, 1084
NruI	TCGCGA	1 cut(s)	600
PaeR7I	CTCGAG	2 cut(s)	179, 1193
PdmI	GAANNNNTTC	2 cut(s)	27, 1047
PfeI	GAWTC	1 cut(s)	776
PkrI	GCNGC	1 cut(s)	1272
PleI	GAGTC	4 cut(s)	190, 218, 1204, 1232
PpsI	GAGTC	4 cut(s)	190, 218, 1204, 1232
PspN4I	GGNNCC	2 cut(s)	156, 609
PspPI	GGNCC	4 cut(s)	192, 679, 1206, 1277
PspXI	VCTCGAGB	2 cut(s)	179, 1193
PsuI	RGATCY	2 cut(s)	154, 911
RruI	TCGCGA	1 cut(s)	600
RsaI	GTAC	2 cut(s)	381, 720
RsaNI	GTAC	2 cut(s)	380, 719
SaqAI	TTAA	6 cut(s)	285, 333, 488, 530, 1299, 1321
SatI	GCNGC	1 cut(s)	1271
Sau3AI	GATC	2 cut(s)	154, 911
Sau96I	GGNCC	4 cut(s)	192, 679, 1206, 1277
SchI	GAGTC	4 cut(s)	191, 219, 1205, 1233
SfaNI	GCATC	2 cut(s)	813, 1163
Sfr274I	CTCGAG	2 cut(s)	179, 1193
SinI	GGWCC	1 cut(s)	679
SlaI	CTCGAG	2 cut(s)	179, 1193
SmiI	ATTTAAAT	1 cut(s)	334
SmlI	CTYRAG	2 cut(s)	179, 1193
SmoI	CTYRAG	2 cut(s)	179, 1193
Sse9I	AATT	6 cut(s)	104, 164, 282, 477, 1124, 1178
SsiI	CCGC	1 cut(s)	293
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	8 cut(s)	50, 125, 189, 348, 647, 1070, 1203, 1274
SwaI	ATTTAAAT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	1241
TaqI	TCGA	5 cut(s)	180, 417, 516, 774, 1194
TasI	AATT	6 cut(s)	104, 164, 282, 477, 1124, 1178
TatI	WGTACW	1 cut(s)	718
TfiI	GAWTC	1 cut(s)	776
Tru1I	TTAA	6 cut(s)	285, 333, 488, 530, 1299, 1321
Tru9I	TTAA	6 cut(s)	285, 333, 488, 530, 1299, 1321
TseFI	GTSAC	3 cut(s)	64, 787, 1084
TseI	GCWGC	1 cut(s)	1270
Tsp45I	GTSAC	3 cut(s)	64, 787, 1084
TspDTI	ATGAA	6 cut(s)	36, 534, 566, 619, 705, 1056
VpaK11BI	GGWCC	1 cut(s)	679
XapI	RAATTY	3 cut(s)	104, 164, 1124
XbaI	TCTAGA	1 cut(s)	124
XhoI	CTCGAG	2 cut(s)	179, 1193
XmnI	GAANNNNTTC	2 cut(s)	27, 1047
XspI	CTAG	8 cut(s)	50, 125, 189, 348, 647, 1070, 1203, 1274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.