FvH4_3g40081

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005911
Physical Location & Seq
Forward (+)
33902595 .. 33904461
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40081.t1

Sequence Viewer

Length: 957 bp
ATGGCTTTTACCTCACAGAAGAACTGCTTCTGCTTCCTGGTGCTTTGGTTTTTGTTAAGCATAGCTTCTGCACAATTGTCCTCAGATTATTATGCAACAAGATGCCCAAGAGCCCTTTCGACTGTTCGGACTGCAGTTATTAATGCAGTGGTGAAGGAGCATCGCATGGGAGCATCCTTGCTCCGTCTCCATTTTCACGATTGCTTTGTTAATGGATGTGATGCATCTGTGCTATTAGATGACACTGCAAATTTTACTGGGGAGAAAACAGCTTTACCAAATTTGAACTCATTGAGAGGATTTGATGTGGTCGATACTATAAAATCTCAGCTGGAAAGTATCTGCCCGGGGGTTGTTTCCTGTGCTGACATCCTCGCCATCGCAGCCCGTGATTCAGTTGTTTCATTGGGAGGGCCTTCTTGGATAGTTCAGTTGGGCAGAAGAGACTCCACCACAGCAAGTTTAAGTGCTGCAAATTCTGAACTCCCATCTCCGAGCCTAGATGTTAATGACCTCATCTCTGCCTTCTCGAATAAAGGCTTTAGTGCCAAAGAATTGGTAGCTCTCTCAGGATCTCACACAATGGGGCAAGCCAAGTGTGTTTTGTTCCGAGACCGGATCTACAATGAGACTAGTATCAACTCAGCATTTTCTACATCATTGAAATCAAACTGTCCAAACTCAGGGAGTGATGACAACCTTTCCCCACTGGATGTTACAAGTCCGGTTTTCTTCGACAACGCTTATTACAAGAACTTGGTGAATAGCAAGGGTCTCTTGCATTCTGACCAACAACTCTTCAGTGGTGGTTCCACAGATTCTCAGGTTACAACTTACAGCACCACAGCTTCAGCATTCTTTGCAGATTTTGCCAATGCCATGGTGAAAATGGGGAACCTCAACCTGCTTACTGGATCTAATGGTCAAATTCGTACAAACTGCCGCAAAATAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

319

Amino Acids

34.14

Weight (kDa)

6.5

Isoelectric Point (pI)

26.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 280 2.8e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 912
AciI CCGC 1 cut(s) 943
AclWI GGATC 3 cut(s) 580, 626, 922
AcsI RAATTY 4 cut(s) 250, 280, 475, 927
AcuI CTGAAG 2 cut(s) 784, 834
AfaI GTAC 1 cut(s) 934
AfiI CCNNNNNNNGG 1 cut(s) 683
AgsI TTSAA 2 cut(s) 286, 664
AhlI ACTAGT 1 cut(s) 632
AjnI CCWGG 1 cut(s) 36
AjuI GAANNNNNNNTTGG 2 cut(s) 100, 132
AluBI AGCT 5 cut(s) 65, 272, 331, 563, 848
AluI AGCT 5 cut(s) 65, 272, 331, 563, 848
Alw26I GTCTC 5 cut(s) 191, 438, 606, 623, 779
AlwI GGATC 3 cut(s) 580, 626, 922
Ama87I CYCGRG 1 cut(s) 346
AoxI GGCC 1 cut(s) 413
ApeKI GCWGC 2 cut(s) 383, 470
ApoI RAATTY 4 cut(s) 250, 280, 475, 927
AseI ATTAAT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 413
AsuC2I CCSGG 2 cut(s) 347, 348
AsuHPI GGTGA 3 cut(s) 163, 772, 895
AvaI CYCGRG 1 cut(s) 346
BanII GRGCYC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 395, 457
BccI CCATC 2 cut(s) 386, 496
BciT130I CCWGG 1 cut(s) 38
BcnI CCSGG 2 cut(s) 347, 348
BcoDI GTCTC 5 cut(s) 191, 438, 606, 623, 779
BcuI ACTAGT 1 cut(s) 632
BfaI CTAG 2 cut(s) 500, 633
BfmI CTRYAG 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 912
BisI GCNGC 3 cut(s) 384, 471, 943
BlsI GCNGC 3 cut(s) 385, 472, 944
Bme1390I CCNGG 3 cut(s) 38, 347, 348
BmeT110I CYCGRG 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 2 cut(s) 811, 896
BmrFI CCNGG 3 cut(s) 38, 347, 348
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 5 cut(s) 92, 169, 182, 211, 233
BmuI ACTGGG 1 cut(s) 267
BpuMI CCSGG 2 cut(s) 347, 348
BsaI GGTCTC 2 cut(s) 606, 779
BsaJI CCNNGG 3 cut(s) 346, 347, 879
BsaWI WCCGGW 2 cut(s) 615, 724
Bsc4I CCNNNNNNNGG 1 cut(s) 683
Bse1I ACTGG 3 cut(s) 262, 714, 916
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 3 cut(s) 346, 347, 879
BseGI GGATG 4 cut(s) 173, 221, 369, 718
BseLI CCNNNNNNNGG 1 cut(s) 683
BseMII CTCAG 6 cut(s) 96, 341, 582, 657, 696, 836
BseNI ACTGG 3 cut(s) 262, 714, 916
BseXI GCAGC 2 cut(s) 395, 457
BsgI GTGCAG 1 cut(s) 54
BshFI GGCC 1 cut(s) 415
BsiHKCI CYCGRG 1 cut(s) 346
BsiSI CCGG 3 cut(s) 347, 616, 725
BslI CCNNNNNNNGG 1 cut(s) 683
BsmAI GTCTC 5 cut(s) 191, 438, 606, 623, 779
BsmBI CGTCTC 1 cut(s) 191
BsmI GAATGC 2 cut(s) 781, 854
BsnI GGCC 1 cut(s) 415
Bso31I GGTCTC 2 cut(s) 606, 779
BsoBI CYCGRG 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 3 cut(s) 572, 618, 914
Bsp19I CCATGG 1 cut(s) 879
BspACI CCGC 1 cut(s) 943
BspANI GGCC 1 cut(s) 415
BspCNI CTCAG 6 cut(s) 95, 340, 581, 656, 695, 835
BspLI GGNNCC 2 cut(s) 811, 896
BspMAI CTGCAG 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 912
BspPI GGATC 3 cut(s) 580, 626, 922
BspTNI GGTCTC 2 cut(s) 606, 779
BsrI ACTGG 3 cut(s) 262, 714, 916
BssECI CCNNGG 3 cut(s) 346, 347, 879
BssMI GATC 3 cut(s) 572, 618, 914
BssT1I CCWWGG 1 cut(s) 879
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 124, 674
Bst6I CTCTTC 2 cut(s) 436, 803
BstAPI GCANNNNNTGC 2 cut(s) 860, 869
BstC8I GCNNGC 1 cut(s) 591
BstDEI CTNAG 6 cut(s) 82, 327, 568, 643, 682, 822
BstDSI CCRYGG 1 cut(s) 879
BstF5I GGATG 4 cut(s) 173, 221, 369, 718
BstKTI GATC 3 cut(s) 575, 621, 917
BstMAI GTCTC 5 cut(s) 191, 438, 606, 623, 779
BstMBI GATC 3 cut(s) 572, 618, 914
BstMWI GCNNNNNNNGC 3 cut(s) 383, 860, 869
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 3 cut(s) 36, 345, 346
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 395, 457
BstX2I RGATCY 3 cut(s) 572, 618, 914
BstXI CCANNNNNNTGG 2 cut(s) 556, 880
BstYI RGATCY 3 cut(s) 572, 618, 914
BsuRI GGCC 1 cut(s) 415
BtgI CCRYGG 1 cut(s) 879
BtgZI GCGATG 2 cut(s) 146, 364
BtsCI GGATG 4 cut(s) 173, 221, 369, 718
BtsI GCAGTG 2 cut(s) 153, 243
BtsIMutI CAGTG 4 cut(s) 153, 243, 707, 808
BveI ACCTGC 1 cut(s) 912
Cac8I GCNNGC 1 cut(s) 591
Cfr13I GGNCC 1 cut(s) 413
Cfr9I CCCGGG 1 cut(s) 346
Csp6I GTAC 1 cut(s) 933
CviAII CATG 2 cut(s) 166, 880
CviQI GTAC 1 cut(s) 933
DdeI CTNAG 6 cut(s) 82, 327, 568, 643, 682, 822
DpnI GATC 3 cut(s) 574, 620, 916
DpnII GATC 3 cut(s) 572, 618, 914
Eam1104I CTCTTC 2 cut(s) 436, 803
EarI CTCTTC 2 cut(s) 436, 803
Eco130I CCWWGG 1 cut(s) 879
Eco24I GRGCYC 1 cut(s) 115
Eco31I GGTCTC 2 cut(s) 606, 779
Eco57I CTGAAG 2 cut(s) 784, 834
Eco88I CYCGRG 1 cut(s) 346
EcoO109I RGGNCCY 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 879
EcoT22I ATGCAT 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 879
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 2 cut(s) 169, 883
FaiI YATR 5 cut(s) 62, 93, 167, 320, 881
FalI AAGNNNNNCTT 6 cut(s) 11, 43, 49, 81, 761, 793
FatI CATG 2 cut(s) 165, 879
Fnu4HI GCNGC 3 cut(s) 384, 471, 943
FokI GGATG 4 cut(s) 160, 228, 356, 725
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 3 cut(s) 384, 471, 943
FspBI CTAG 2 cut(s) 500, 633
GluI GCNGC 3 cut(s) 384, 471, 943
HaeIII GGCC 1 cut(s) 415
HapII CCGG 3 cut(s) 347, 616, 725
Hin1II CATG 2 cut(s) 169, 883
HinfI GANTC 3 cut(s) 392, 446, 818
HpaII CCGG 3 cut(s) 347, 616, 725
HphI GGTGA 3 cut(s) 163, 772, 895
Hpy188I TCNGA 6 cut(s) 85, 129, 481, 495, 611, 787
Hpy188III TCNNGA 3 cut(s) 197, 529, 570
HpyAV CCTTC 3 cut(s) 148, 426, 535
HpyCH4III ACNGT 2 cut(s) 124, 674
HpyCH4V TGCA 9 cut(s) 71, 95, 134, 146, 224, 248, 473, 781, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 383, 860, 869
HpyF3I CTNAG 6 cut(s) 82, 327, 568, 643, 682, 822
Hsp92II CATG 2 cut(s) 169, 883
Kzo9I GATC 3 cut(s) 572, 618, 914
LmnI GCTCC 3 cut(s) 157, 170, 186
Lsp1109I GCAGC 2 cut(s) 395, 457
LweI GCATC 5 cut(s) 92, 169, 182, 211, 233
MaeI CTAG 2 cut(s) 500, 633
MaeIII GTNAC 2 cut(s) 715, 826
MalI GATC 3 cut(s) 574, 620, 916
MboI GATC 3 cut(s) 572, 618, 914
MboII GAAGA 4 cut(s) 31, 453, 724, 790
MfeI CAATTG 1 cut(s) 74
MflI RGATCY 3 cut(s) 572, 618, 914
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 7 cut(s) 74, 250, 280, 475, 554, 927, 952
MlyI GAGTC 1 cut(s) 440
MnlI CCTC 7 cut(s) 22, 91, 290, 383, 404, 524, 908
Mph1103I ATGCAT 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 5 cut(s) 56, 141, 210, 464, 507
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 3 cut(s) 347, 616, 725
MspR9I CCNGG 3 cut(s) 38, 347, 348
MunI CAATTG 1 cut(s) 74
Mva1269I GAATGC 2 cut(s) 781, 854
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 383, 860, 869
NciI CCSGG 2 cut(s) 347, 348
NcoI CCATGG 1 cut(s) 879
NdeII GATC 3 cut(s) 572, 618, 914
NlaIII CATG 2 cut(s) 169, 883
NlaIV GGNNCC 2 cut(s) 811, 896
NsiI ATGCAT 1 cut(s) 226
PctI GAATGC 2 cut(s) 781, 854
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 392, 818
PkrI GCNGC 3 cut(s) 385, 472, 944
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
PshBI ATTAAT 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 811, 896
PspPI GGNCC 1 cut(s) 413
PstI CTGCAG 1 cut(s) 136
PsuI RGATCY 3 cut(s) 572, 618, 914
PvuII CAGCTG 1 cut(s) 331
RsaI GTAC 1 cut(s) 934
RsaNI GTAC 1 cut(s) 933
SaqAI TTAA 5 cut(s) 56, 141, 210, 464, 507
SatI GCNGC 3 cut(s) 384, 471, 943
Sau3AI GATC 3 cut(s) 572, 618, 914
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 3 cut(s) 38, 347, 348
SduI GDGCHC 1 cut(s) 115
SfaNI GCATC 5 cut(s) 92, 169, 182, 211, 233
SfcI CTRYAG 1 cut(s) 132
SmaI CCCGGG 1 cut(s) 348
SpeI ACTAGT 1 cut(s) 632
Sse9I AATT 7 cut(s) 74, 250, 280, 475, 554, 927, 952
SsiI CCGC 1 cut(s) 943
SspMI CTAG 2 cut(s) 500, 633
StyD4I CCNGG 3 cut(s) 36, 345, 346
StyI CCWWGG 1 cut(s) 879
TaaI ACNGT 2 cut(s) 124, 674
TaqI TCGA 4 cut(s) 119, 312, 530, 735
TasI AATT 7 cut(s) 74, 250, 280, 475, 554, 927, 952
TauI GCSGC 1 cut(s) 945
TfiI GAWTC 2 cut(s) 392, 818
Tru1I TTAA 5 cut(s) 56, 141, 210, 464, 507
Tru9I TTAA 5 cut(s) 56, 141, 210, 464, 507
TscAI CASTG 4 cut(s) 153, 250, 714, 808
TseI GCWGC 2 cut(s) 383, 470
TspDTI ATGAA 1 cut(s) 393
TspGWI ACGGA 1 cut(s) 173
TspMI CCCGGG 1 cut(s) 346
TspRI CASTG 4 cut(s) 153, 250, 714, 808
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 4 cut(s) 250, 280, 475, 927
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XmaI CCCGGG 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 2 cut(s) 500, 633
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.