Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005911

Physical Location & Seq

Genomic Coordinates Forward (+)

18002987 .. 18005311

Gene Structure 2325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGGTTCATATATTACTGGTTCATGCACTCCCACAAACACTAAAATTTCTTTGTCATTATTTTTCCTTCTTGTTGGAGTAGCTTCTGCTCAATTGTCCTCTACTTTCTATGGAACATCATGTCCTAATGCCCTGTCCACCATAAAATCCGCCGTGGACTCAGCGGTGTCGAAGGAAGCTCGCATGGGAGCTTCCTTGCTCCGCCTTCATTTCCATGATTGCTTTGTTAATGGATGTGATGCTTCGGTTCTGCTGGATGACACAGCCAATTTCACAGGAGAGAAAACAGCAGGTGCTAATGCTAATTCTTTGAGGGGATTTGATGTAATCGATACAATTAAATCTCAATTGGAGAGTCTCTGCCCCAAAGTGGTCTCTTGTGCTGACATCTTAACTGTTGCTGCTAGGGACTCTATTGTTGCATTGGGTGGACTTACCTATACAGTGCCATTGGGCAGAAGAGACTCCACCACAGCAAGCCTAAGTGCTGCCAATTCCAACATACCCGCTCCCACATTGAACCTTTCTGCGCTTATTACTGCTTTCTCAAACAAAGGCTTCACTGCAAAGGAACTAGTGGCCCTCTCAGGATCGCATACAATTGGGCAAGCTAGGTGCACAACATTCCGGACGCGTCTTTATAATGAAGCAAACATAAACGCTTCATTTGCAACATCGCTGAAATCAAGTTGTCCAACTAGTGGAGGCGCTAACAATCTCTCCCCACTGGATGTCACAAGTCCTACATCTTTTGACAATGCTTATTTCACGAATTTGGTGAGCCAAAAGGGCCTATTGCACTCTGACCAACAGCTCTTTGGCGGTGGATCTACCGACTCTCAGGTGAATGCTTACGTGAGCAATCCAGCAACCTTCAGAACCGACTTTGCCAATGCTATGATAAAAATGGGAAACCTTAGCCCTCTCACGGGCACCAATGGTCAGATTAGGACCAACTGTAGAAAAGTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

325

Amino Acids

33.87

Weight (kDa)

8.56

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005911)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40081 FvH4_6g10250 FvH4_6g10250 FvH4_6g10250
malus_domestica	MD03G1058900.v1.1 MD04G1170900.v1.1 MD12G1184600.v1.1
prunus_persica	Prupe.6G044900_v2.0.a1 Prupe.6G289400_v2.0.a1 Prupe.6G289400_v2.0.a1
pyrus_communis	pycom04g15160 pycom12g17350
rosa_chinensis	RchiOBHm_Chr3g0461001 RchiOBHm_Chr5g0072281
rosa_laevigata	RLG00000024959 RLG00000036291
rosa_multiflora	Rmu_co8448951.1_g000001 Rmu_sc0006670.1_g000023 Rmu_sc0007017.1_g000015
rosa_roxburghii	Rroxscaffold_6G00418950
rosa_rugosa	Rorug03G0047700
rosa_samantha	Rh3AG105100 Rh3CG110400 Rh3DG110700 Rh5BG493600 Rh5CG517600
rosa_wichuraiana	Rw3G008990 Rw5G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	642
AarI	CACCTGC	1 cut(s)	281
Acc36I	ACCTGC	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	932
AccB7I	CCANNNNNTGG	1 cut(s)	701
AccBSI	CCGCTC	1 cut(s)	509
AccII	CGCG	1 cut(s)	634
AccIII	TCCGGA	1 cut(s)	627
AciI	CCGC	5 cut(s)	150, 164, 202, 507, 822
AclWI	GGATC	2 cut(s)	598, 835
AcsI	RAATTY	2 cut(s)	45, 772
AcuI	CTGAAG	1 cut(s)	859
AfiI	CCNNNNNNNGG	4 cut(s)	370, 701, 928, 929
AflIII	ACRYGT	1 cut(s)	632
AgsI	TTSAA	1 cut(s)	520
AhlI	ACTAGT	2 cut(s)	574, 698
AloI	GAACNNNNNNTCC	2 cut(s)	106, 138
AluBI	AGCT	5 cut(s)	83, 179, 191, 611, 814
AluI	AGCT	5 cut(s)	83, 179, 191, 611, 814
Alw21I	GWGCWC	1 cut(s)	620
Alw26I	GTCTC	3 cut(s)	362, 379, 456
Alw44I	GTGCAC	1 cut(s)	616
AlwI	GGATC	2 cut(s)	598, 835
Aor13HI	TCCGGA	1 cut(s)	627
AoxI	GGCC	2 cut(s)	579, 790
ApaLI	GTGCAC	1 cut(s)	616
ApeKI	GCWGC	2 cut(s)	401, 488
ApoI	RAATTY	2 cut(s)	45, 772
AspLEI	GCGC	2 cut(s)	532, 710
AspS9I	GGNCC	3 cut(s)	580, 790, 951
AsuHPI	GGTGA	2 cut(s)	790, 856
AvaII	GGWCC	1 cut(s)	951
BaeGI	GKGCMC	2 cut(s)	620, 935
BanI	GGYRCC	1 cut(s)	932
Bbv12I	GWGCWC	1 cut(s)	620
BbvI	GCAGC	2 cut(s)	388, 475
BceAI	ACGGC	1 cut(s)	137
BcoDI	GTCTC	3 cut(s)	362, 379, 456
BcuI	ACTAGT	2 cut(s)	574, 698
BfaI	CTAG	4 cut(s)	405, 575, 612, 699
BfmI	CTRYAG	1 cut(s)	958
BfoI	RGCGCY	1 cut(s)	711
BfuAI	ACCTGC	1 cut(s)	281
BglI	GCCNNNNNGGC	1 cut(s)	789
BisI	GCNGC	2 cut(s)	402, 489
BlsI	GCNGC	2 cut(s)	403, 490
Bme18I	GGWCC	1 cut(s)	951
BmgT120I	GGNCC	3 cut(s)	580, 790, 951
BmiI	GGNNCC	1 cut(s)	934
BmsI	GCATC	1 cut(s)	229
Bpu10I	CCTNAGC	1 cut(s)	917
Bsa29I	ATCGAT	1 cut(s)	330
BsaAI	YACGTR	1 cut(s)	856
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	627
BsaXI	ACNNNNNCTCC	2 cut(s)	704, 734
Bsc4I	CCNNNNNNNGG	4 cut(s)	370, 701, 928, 929
Bse1I	ACTGG	2 cut(s)	22, 732
BseAI	TCCGGA	1 cut(s)	627
BseCI	ATCGAT	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	3 cut(s)	239, 262, 736
BseLI	CCNNNNNNNGG	4 cut(s)	370, 701, 928, 929
BseMII	CTCAG	3 cut(s)	174, 600, 854
BseNI	ACTGG	2 cut(s)	22, 732
BseSI	GKGCMC	2 cut(s)	620, 935
BseXI	GCAGC	2 cut(s)	388, 475
Bsh1236I	CGCG	1 cut(s)	634
BshFI	GGCC	2 cut(s)	581, 792
BshNI	GGYRCC	1 cut(s)	932
BshVI	ATCGAT	1 cut(s)	330
BsiHKAI	GWGCWC	1 cut(s)	620
BsiSI	CCGG	1 cut(s)	628
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	4 cut(s)	370, 701, 928, 929
BsmAI	GTCTC	3 cut(s)	362, 379, 456
BsmFI	GGGAC	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	853
BsnI	GGCC	2 cut(s)	581, 792
Bso31I	GGTCTC	1 cut(s)	379
Bsp1286I	GDGCHC	2 cut(s)	620, 935
Bsp13I	TCCGGA	1 cut(s)	627
Bsp143I	GATC	2 cut(s)	590, 827
BspACI	CCGC	5 cut(s)	150, 164, 202, 507, 822
BspANI	GGCC	2 cut(s)	581, 792
BspCNI	CTCAG	3 cut(s)	173, 599, 853
BspDI	ATCGAT	1 cut(s)	330
BspEI	TCCGGA	1 cut(s)	627
BspFNI	CGCG	1 cut(s)	634
BspLI	GGNNCC	1 cut(s)	934
BspMI	ACCTGC	1 cut(s)	281
BspPI	GGATC	2 cut(s)	598, 835
BspT107I	GGYRCC	1 cut(s)	932
BspTNI	GGTCTC	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	509
BsrI	ACTGG	2 cut(s)	22, 732
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	2 cut(s)	590, 827
Bst4CI	ACNGT	3 cut(s)	397, 445, 959
Bst6I	CTCTTC	1 cut(s)	454
BstBAI	YACGTR	1 cut(s)	856
BstC8I	GCNNGC	3 cut(s)	181, 478, 609
BstDEI	CTNAG	5 cut(s)	160, 482, 586, 840, 917
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	239, 262, 736
BstFNI	CGCG	1 cut(s)	634
BstH2I	RGCGCY	1 cut(s)	711
BstHHI	GCGC	2 cut(s)	532, 710
BstKTI	GATC	2 cut(s)	593, 830
BstMAI	GTCTC	3 cut(s)	362, 379, 456
BstMBI	GATC	2 cut(s)	590, 827
BstMWI	GCNNNNNNNGC	2 cut(s)	668, 789
BstSFI	CTRYAG	1 cut(s)	958
BstSLI	GKGCMC	2 cut(s)	620, 935
BstUI	CGCG	1 cut(s)	634
BstV1I	GCAGC	2 cut(s)	388, 475
BstX2I	RGATCY	1 cut(s)	827
BstYI	RGATCY	1 cut(s)	827
Bsu15I	ATCGAT	1 cut(s)	330
BsuRI	GGCC	2 cut(s)	581, 792
BsuTUI	ATCGAT	1 cut(s)	330
BtgI	CCRYGG	1 cut(s)	153
BtgZI	GCGATG	1 cut(s)	660
BtsCI	GGATG	3 cut(s)	239, 262, 736
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	3 cut(s)	450, 561, 725
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	3 cut(s)	181, 478, 609
CfoI	GCGC	2 cut(s)	532, 710
Cfr13I	GGNCC	3 cut(s)	580, 790, 951
ClaI	ATCGAT	1 cut(s)	330
CseI	GACGC	2 cut(s)	623, 640
CviAII	CATG	4 cut(s)	24, 120, 184, 215
DdeI	CTNAG	5 cut(s)	160, 482, 586, 840, 917
DpnI	GATC	2 cut(s)	592, 829
DpnII	GATC	2 cut(s)	590, 827
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
EciI	GGCGGA	2 cut(s)	139, 191
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	951
Eco57I	CTGAAG	1 cut(s)	859
EcoO109I	RGGNCCY	1 cut(s)	790
FaeI	CATG	4 cut(s)	27, 123, 187, 218
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	4 cut(s)	23, 119, 183, 214
FauI	CCCGC	1 cut(s)	514
Fnu4HI	GCNGC	2 cut(s)	402, 489
FokI	GGATG	3 cut(s)	246, 269, 743
Fsp4HI	GCNGC	2 cut(s)	402, 489
FspBI	CTAG	4 cut(s)	405, 575, 612, 699
GlaI	GCGC	2 cut(s)	531, 709
GluI	GCNGC	2 cut(s)	402, 489
HaeII	RGCGCY	1 cut(s)	711
HaeIII	GGCC	2 cut(s)	581, 792
HapII	CCGG	1 cut(s)	628
HgaI	GACGC	2 cut(s)	623, 640
HhaI	GCGC	2 cut(s)	532, 710
Hin1II	CATG	4 cut(s)	27, 123, 187, 218
Hin6I	GCGC	2 cut(s)	530, 708
HinP1I	GCGC	2 cut(s)	530, 708
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HinfI	GANTC	5 cut(s)	158, 355, 410, 464, 836
HpaII	CCGG	1 cut(s)	628
HphI	GGTGA	2 cut(s)	790, 856
Hpy166II	GTNNAC	5 cut(s)	138, 157, 431, 618, 970
Hpy188I	TCNGA	3 cut(s)	805, 878, 945
Hpy188III	TCNNGA	3 cut(s)	588, 628, 769
Hpy8I	GTNNAC	5 cut(s)	138, 157, 431, 618, 970
HpyAV	CCTTC	4 cut(s)	77, 166, 215, 883
HpyCH4III	ACNGT	3 cut(s)	397, 445, 959
HpyCH4IV	ACGT	1 cut(s)	855
HpyCH4V	TGCA	6 cut(s)	27, 422, 566, 618, 671, 799
HpyF10VI	GCNNNNNNNGC	2 cut(s)	668, 789
HpyF3I	CTNAG	5 cut(s)	160, 482, 586, 840, 917
HpySE526I	ACGT	1 cut(s)	855
Hsp92II	CATG	4 cut(s)	27, 123, 187, 218
HspAI	GCGC	2 cut(s)	530, 708
Kpn2I	TCCGGA	1 cut(s)	627
Kzo9I	GATC	2 cut(s)	590, 827
LmnI	GCTCC	3 cut(s)	188, 204, 514
Lsp1109I	GCAGC	2 cut(s)	388, 475
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	4 cut(s)	405, 575, 612, 699
MaeII	ACGT	1 cut(s)	855
MaeIII	GTNAC	1 cut(s)	733
MalI	GATC	2 cut(s)	592, 829
MbiI	CCGCTC	1 cut(s)	509
MboI	GATC	2 cut(s)	590, 827
MboII	GAAGA	1 cut(s)	471
MfeI	CAATTG	3 cut(s)	92, 347, 600
MflI	RGATCY	1 cut(s)	827
MhlI	GDGCHC	2 cut(s)	620, 935
MluCI	AATT	9 cut(s)	45, 92, 268, 304, 336, 347, 493, 600, 772
MluI	ACGCGT	1 cut(s)	632
MlyI	GAGTC	5 cut(s)	152, 364, 404, 458, 830
MmeI	TCCRAC	3 cut(s)	55, 522, 719
MnlI	CCTC	5 cut(s)	109, 306, 593, 698, 933
MroI	TCCGGA	1 cut(s)	627
MseI	TTAA	3 cut(s)	228, 339, 392
MslI	CAYNNNNRTG	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	1 cut(s)	628
MunI	CAATTG	3 cut(s)	92, 347, 600
Mva1269I	GAATGC	1 cut(s)	853
MvnI	CGCG	1 cut(s)	634
MwoI	GCNNNNNNNGC	2 cut(s)	668, 789
NdeII	GATC	2 cut(s)	590, 827
NlaIII	CATG	4 cut(s)	27, 123, 187, 218
NlaIV	GGNNCC	1 cut(s)	934
NmuCI	GTSAC	1 cut(s)	733
PaqCI	CACCTGC	1 cut(s)	281
PctI	GAATGC	1 cut(s)	853
PflMI	CCANNNNNTGG	1 cut(s)	701
PkrI	GCNGC	2 cut(s)	403, 490
PleI	GAGTC	5 cut(s)	152, 363, 404, 458, 830
PpsI	GAGTC	5 cut(s)	152, 363, 404, 458, 830
Ppu21I	YACGTR	1 cut(s)	856
PsiI	TTATAA	1 cut(s)	642
PspN4I	GGNNCC	1 cut(s)	934
PspPI	GGNCC	3 cut(s)	580, 790, 951
PsuI	RGATCY	1 cut(s)	827
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	3 cut(s)	228, 339, 392
SatI	GCNGC	2 cut(s)	402, 489
Sau3AI	GATC	2 cut(s)	590, 827
Sau96I	GGNCC	3 cut(s)	580, 790, 951
SchI	GAGTC	5 cut(s)	152, 364, 404, 458, 830
SduI	GDGCHC	2 cut(s)	620, 935
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	958
SinI	GGWCC	1 cut(s)	951
SmiMI	CAYNNNNRTG	1 cut(s)	213
SpeI	ACTAGT	2 cut(s)	574, 698
Sse9I	AATT	9 cut(s)	45, 92, 268, 304, 336, 347, 493, 600, 772
SsiI	CCGC	5 cut(s)	150, 164, 202, 507, 822
SspMI	CTAG	4 cut(s)	405, 575, 612, 699
TaaI	ACNGT	3 cut(s)	397, 445, 959
TaiI	ACGT	1 cut(s)	858
TaqI	TCGA	2 cut(s)	170, 330
TasI	AATT	9 cut(s)	45, 92, 268, 304, 336, 347, 493, 600, 772
Tru1I	TTAA	3 cut(s)	228, 339, 392
Tru9I	TTAA	3 cut(s)	228, 339, 392
TscAI	CASTG	3 cut(s)	450, 568, 732
TseFI	GTSAC	1 cut(s)	733
TseI	GCWGC	2 cut(s)	401, 488
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	4 cut(s)	12, 197, 654, 660
TspRI	CASTG	3 cut(s)	450, 568, 732
Van91I	CCANNNNNTGG	1 cut(s)	701
VneI	GTGCAC	1 cut(s)	616
VpaK11BI	GGWCC	1 cut(s)	951
XapI	RAATTY	2 cut(s)	45, 772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	815
XspI	CTAG	4 cut(s)	405, 575, 612, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.