Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005911

Physical Location & Seq

Genomic Coordinates Forward (+)

19683432 .. 19685851

Gene Structure 2420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g17350.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGTTCATATGATACTGGTTCATGCACTCCCACAAACACTAAAATCTCATTGTCATTATTTTTCCTTCTTGTTGGAGCTTCTGCTCAGTTGTCCTCTACTTTCTATGGAAAATCGTGTCCTAATGCACTGTCCACCATTAAATCGGCGGTGAACTCAGCAGTGTCGAAGGAAGCTCGCATGGGAGCTTCCTTGCTCCGTCTTCATTTCCATGATTGTTTTGTTAACGGATGTGATGCTTCGGTTCTGCTGGATGACACACCCAATTTCACAGGAGAGAAAACAGCAGGTCCTAATGCTAATTCTTTGAGGGGATTTGATGTAATCAATACAATTAAATCTCAATTGGAAAGTCTCTGCCCCAAAGTGGTCTCTTGTGCTGACATCTTAACCGTTGCTGCTCGGGACTCTATTGTTGCATTGGGTGGACCTACATATACAGTGCCATTAGGCAGAAGAGACTCCACCACAGCAAGCCTAAGTGCTGCCAATTCCAACATACCCGCTCCCACATTGAATCTTGCTGGCCTAATTACTGCTTTCTCAAACAAAGGCTTCACTGCCAAGGAGCTAGTTGCCCTCTCAGGATCTCATACAATTGGGCAAGCTAAGTGTACATCATTCCGGGCACGTCTTTACAACGAACCAAACATAAACAATTCATTCGCAACATCATTGAAATCAAGTTGTCCAACTAGGGGAGGCGATAACAATCTCTCCCCGCTCGATGTCACAAGTCCAACATCTTTTGACAATGCTTATTTCAGGAATTTGGTGAGCCAAAAGGGCCTATTGCACTCTGACCAACAGCTCTGTAGTGGTGGGTCTACAGACTCTCAGGTGAACGCTTACGTGAGCAATCCTGCAACCTTCAGAGCAGACTTTGCCAATGCTATCAAAAAGATGGGAAACCTTAGCCCTCTCACGGGCTCTAGGGGTCAGATTAGGACCGATTGTAGAAAAGTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

324

Amino Acids

33.95

Weight (kDa)

9.01

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005911)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40081 FvH4_6g10250 FvH4_6g10250 FvH4_6g10250
malus_domestica	MD03G1058900.v1.1 MD04G1170900.v1.1 MD12G1184600.v1.1
prunus_persica	Prupe.6G044900_v2.0.a1 Prupe.6G289400_v2.0.a1 Prupe.6G289400_v2.0.a1
pyrus_communis	pycom04g15160 pycom12g17350
rosa_chinensis	RchiOBHm_Chr3g0461001 RchiOBHm_Chr5g0072281
rosa_laevigata	RLG00000024959 RLG00000036291
rosa_multiflora	Rmu_co8448951.1_g000001 Rmu_sc0006670.1_g000023 Rmu_sc0007017.1_g000015
rosa_roxburghii	Rroxscaffold_6G00418950
rosa_rugosa	Rorug03G0047700
rosa_samantha	Rh3AG105100 Rh3CG110400 Rh3DG110700 Rh5BG493600 Rh5CG517600
rosa_wichuraiana	Rw3G008990 Rw5G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	278
AccBSI	CCGCTC	2 cut(s)	506, 724
AccI	GTMKAC	1 cut(s)	827
AciI	CCGC	3 cut(s)	149, 504, 722
AclWI	GGATC	1 cut(s)	595
AcsI	RAATTY	1 cut(s)	769
AcuI	CTGAAG	1 cut(s)	856
AfaI	GTAC	1 cut(s)	616
AfiI	CCNNNNNNNGG	4 cut(s)	367, 698, 925, 926
AgsI	TTSAA	2 cut(s)	517, 679
AjiI	CACGTC	1 cut(s)	632
AluBI	AGCT	6 cut(s)	80, 176, 188, 571, 608, 811
AluI	AGCT	6 cut(s)	80, 176, 188, 571, 608, 811
Alw26I	GTCTC	3 cut(s)	359, 376, 453
AlwI	GGATC	1 cut(s)	595
Ama87I	CYCGRG	1 cut(s)	402
AoxI	GGCC	2 cut(s)	526, 787
ApeKI	GCWGC	2 cut(s)	398, 485
ApoI	RAATTY	1 cut(s)	769
AspS9I	GGNCC	4 cut(s)	290, 428, 787, 948
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	3 cut(s)	163, 787, 853
AvaI	CYCGRG	1 cut(s)	402
AvaII	GGWCC	3 cut(s)	290, 428, 948
BaeGI	GKGCMC	1 cut(s)	631
BanII	GRGCYC	1 cut(s)	932
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	385, 472
BccI	CCATC	1 cut(s)	898
BcnI	CCSGG	1 cut(s)	626
BcoDI	GTCTC	3 cut(s)	359, 376, 453
BfaI	CTAG	3 cut(s)	572, 696, 933
BfmI	CTRYAG	2 cut(s)	814, 828
BfuAI	ACCTGC	1 cut(s)	278
BglI	GCCNNNNNGGC	1 cut(s)	786
BisI	GCNGC	2 cut(s)	399, 486
BlsI	GCNGC	2 cut(s)	400, 487
Bme1390I	CCNGG	1 cut(s)	626
Bme18I	GGWCC	3 cut(s)	290, 428, 948
BmeT110I	CYCGRG	1 cut(s)	402
BmgBI	CACGTC	1 cut(s)	632
BmgT120I	GGNCC	4 cut(s)	290, 428, 787, 948
BmrFI	CCNGG	1 cut(s)	626
BmsI	GCATC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	914
BpuMI	CCSGG	1 cut(s)	626
BsaAI	YACGTR	1 cut(s)	853
BsaBI	GATNNNNATC	1 cut(s)	711
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	564
BsaXI	ACNNNNNCTCC	2 cut(s)	701, 731
Bsc4I	CCNNNNNNNGG	4 cut(s)	367, 698, 925, 926
Bse1I	ACTGG	1 cut(s)	22
Bse8I	GATNNNNATC	1 cut(s)	711
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	2 cut(s)	236, 259
BseJI	GATNNNNATC	1 cut(s)	711
BseLI	CCNNNNNNNGG	4 cut(s)	367, 698, 925, 926
BseMII	CTCAG	4 cut(s)	101, 171, 597, 851
BseNI	ACTGG	1 cut(s)	22
BseSI	GKGCMC	1 cut(s)	631
BseXI	GCAGC	2 cut(s)	385, 472
BshFI	GGCC	2 cut(s)	528, 789
BsiHKCI	CYCGRG	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	625
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	4 cut(s)	367, 698, 925, 926
BsmAI	GTCTC	3 cut(s)	359, 376, 453
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	528, 789
Bso31I	GGTCTC	1 cut(s)	376
BsoBI	CYCGRG	1 cut(s)	402
Bsp1286I	GDGCHC	2 cut(s)	631, 932
Bsp1407I	TGTACA	1 cut(s)	614
Bsp143I	GATC	1 cut(s)	587
BspACI	CCGC	3 cut(s)	149, 504, 722
BspANI	GGCC	2 cut(s)	528, 789
BspCNI	CTCAG	4 cut(s)	100, 170, 596, 850
BspMI	ACCTGC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	595
BspTNI	GGTCTC	1 cut(s)	376
BsrBI	CCGCTC	2 cut(s)	506, 724
BsrGI	TGTACA	1 cut(s)	614
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	1 cut(s)	587
BssT1I	CCWWGG	1 cut(s)	564
Bst4CI	ACNGT	3 cut(s)	132, 394, 442
Bst6I	CTCTTC	1 cut(s)	451
BstAPI	GCANNNNNTGC	1 cut(s)	884
BstAUI	TGTACA	1 cut(s)	614
BstBAI	YACGTR	1 cut(s)	853
BstC8I	GCNNGC	4 cut(s)	178, 475, 526, 606
BstDEI	CTNAG	7 cut(s)	87, 157, 479, 583, 609, 837, 914
BstF5I	GGATG	2 cut(s)	236, 259
BstKTI	GATC	1 cut(s)	590
BstMAI	GTCTC	3 cut(s)	359, 376, 453
BstMBI	GATC	1 cut(s)	587
BstMWI	GCNNNNNNNGC	2 cut(s)	786, 884
BstSCI	CCNGG	1 cut(s)	624
BstSFI	CTRYAG	2 cut(s)	814, 828
BstSLI	GKGCMC	1 cut(s)	631
BstV1I	GCAGC	2 cut(s)	385, 472
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BsuRI	GGCC	2 cut(s)	528, 789
BtrI	CACGTC	1 cut(s)	632
BtsCI	GGATG	2 cut(s)	236, 259
BtsI	GCAGTG	2 cut(s)	168, 558
BtsIMutI	CAGTG	4 cut(s)	128, 168, 447, 558
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	4 cut(s)	178, 475, 526, 606
Cfr13I	GGNCC	4 cut(s)	290, 428, 787, 948
Csp6I	GTAC	1 cut(s)	615
CviAII	CATG	3 cut(s)	24, 181, 212
CviQI	GTAC	1 cut(s)	615
DdeI	CTNAG	7 cut(s)	87, 157, 479, 583, 609, 837, 914
DpnI	GATC	1 cut(s)	589
DpnII	GATC	1 cut(s)	587
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	932
Eco31I	GGTCTC	1 cut(s)	376
Eco47I	GGWCC	3 cut(s)	290, 428, 948
Eco57I	CTGAAG	1 cut(s)	856
Eco88I	CYCGRG	1 cut(s)	402
EcoO109I	RGGNCCY	2 cut(s)	290, 787
EcoT14I	CCWWGG	1 cut(s)	564
EcoT38I	GRGCYC	1 cut(s)	932
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	3 cut(s)	27, 184, 215
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	3 cut(s)	23, 180, 211
FauI	CCCGC	2 cut(s)	511, 729
FauNDI	CATATG	1 cut(s)	10
FblI	GTMKAC	1 cut(s)	827
Fnu4HI	GCNGC	2 cut(s)	399, 486
FokI	GGATG	2 cut(s)	243, 266
FriOI	GRGCYC	1 cut(s)	932
Fsp4HI	GCNGC	2 cut(s)	399, 486
FspBI	CTAG	3 cut(s)	572, 696, 933
GluI	GCNGC	2 cut(s)	399, 486
HaeIII	GGCC	2 cut(s)	528, 789
HapII	CCGG	1 cut(s)	625
Hin1II	CATG	3 cut(s)	27, 184, 215
HincII	GTYRAC	2 cut(s)	226, 967
HindII	GTYRAC	2 cut(s)	226, 967
HinfI	GANTC	4 cut(s)	407, 461, 517, 833
HpaI	GTTAAC	1 cut(s)	226
HpaII	CCGG	1 cut(s)	625
HphI	GGTGA	3 cut(s)	163, 787, 853
Hpy166II	GTNNAC	8 cut(s)	135, 154, 226, 428, 615, 828, 844, 967
Hpy188I	TCNGA	3 cut(s)	802, 875, 942
Hpy188III	TCNNGA	3 cut(s)	404, 585, 766
Hpy8I	GTNNAC	8 cut(s)	135, 154, 226, 428, 615, 828, 844, 967
HpyAV	CCTTC	3 cut(s)	77, 163, 880
HpyCH4III	ACNGT	3 cut(s)	132, 394, 442
HpyCH4IV	ACGT	2 cut(s)	631, 852
HpyCH4V	TGCA	5 cut(s)	27, 128, 419, 796, 866
HpyF10VI	GCNNNNNNNGC	2 cut(s)	786, 884
HpyF3I	CTNAG	7 cut(s)	87, 157, 479, 583, 609, 837, 914
HpySE526I	ACGT	2 cut(s)	631, 852
Hsp92II	CATG	3 cut(s)	27, 184, 215
KspAI	GTTAAC	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	587
LmnI	GCTCC	5 cut(s)	77, 185, 201, 511, 568
Lsp1109I	GCAGC	2 cut(s)	385, 472
LweI	GCATC	1 cut(s)	226
MaeI	CTAG	3 cut(s)	572, 696, 933
MaeII	ACGT	2 cut(s)	631, 852
MaeIII	GTNAC	1 cut(s)	730
MalI	GATC	1 cut(s)	589
MbiI	CCGCTC	2 cut(s)	506, 724
MboI	GATC	1 cut(s)	587
MboII	GAAGA	2 cut(s)	194, 468
MfeI	CAATTG	2 cut(s)	344, 597
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	2 cut(s)	631, 932
MluCI	AATT	9 cut(s)	265, 301, 333, 344, 490, 531, 597, 658, 769
MlyI	GAGTC	3 cut(s)	401, 455, 827
MmeI	TCCRAC	4 cut(s)	55, 519, 716, 764
MnlI	CCTC	5 cut(s)	106, 303, 590, 695, 930
MseI	TTAA	4 cut(s)	141, 225, 336, 389
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	1 cut(s)	625
MspR9I	CCNGG	1 cut(s)	626
MunI	CAATTG	2 cut(s)	344, 597
MwoI	GCNNNNNNNGC	2 cut(s)	786, 884
NciI	CCSGG	1 cut(s)	626
NdeI	CATATG	1 cut(s)	10
NdeII	GATC	1 cut(s)	587
NlaIII	CATG	3 cut(s)	27, 184, 215
NmuCI	GTSAC	1 cut(s)	730
PfeI	GAWTC	1 cut(s)	517
PkrI	GCNGC	2 cut(s)	400, 487
PleI	GAGTC	3 cut(s)	401, 455, 827
PpsI	GAGTC	3 cut(s)	401, 455, 827
Ppu21I	YACGTR	1 cut(s)	853
PpuMI	RGGWCCY	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	290
PspPI	GGNCC	4 cut(s)	290, 428, 787, 948
PspPPI	RGGWCCY	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	587
RsaI	GTAC	1 cut(s)	616
RsaNI	GTAC	1 cut(s)	615
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	4 cut(s)	141, 225, 336, 389
SatI	GCNGC	2 cut(s)	399, 486
Sau3AI	GATC	1 cut(s)	587
Sau96I	GGNCC	4 cut(s)	290, 428, 787, 948
SchI	GAGTC	3 cut(s)	401, 455, 827
ScrFI	CCNGG	1 cut(s)	626
SduI	GDGCHC	2 cut(s)	631, 932
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	2 cut(s)	814, 828
SinI	GGWCC	3 cut(s)	290, 428, 948
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	9 cut(s)	265, 301, 333, 344, 490, 531, 597, 658, 769
SsiI	CCGC	3 cut(s)	149, 504, 722
SspMI	CTAG	3 cut(s)	572, 696, 933
StyD4I	CCNGG	1 cut(s)	624
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	3 cut(s)	132, 394, 442
TaiI	ACGT	2 cut(s)	634, 855
TaqI	TCGA	2 cut(s)	167, 726
TaqII	GACCGA	1 cut(s)	965
TasI	AATT	9 cut(s)	265, 301, 333, 344, 490, 531, 597, 658, 769
TatI	WGTACW	1 cut(s)	614
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	4 cut(s)	141, 225, 336, 389
Tru9I	TTAA	4 cut(s)	141, 225, 336, 389
TscAI	CASTG	4 cut(s)	135, 168, 447, 565
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	2 cut(s)	398, 485
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	3 cut(s)	12, 194, 651
TspGWI	ACGGA	2 cut(s)	188, 243
TspRI	CASTG	4 cut(s)	135, 168, 447, 565
VpaK11BI	GGWCC	3 cut(s)	290, 428, 948
XapI	RAATTY	1 cut(s)	769
XmiI	GTMKAC	1 cut(s)	827
XspI	CTAG	3 cut(s)	572, 696, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.