Rh3AG105100

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0005911
Physical Location & Seq
Reverse (-)
8802654 .. 8805676
3023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG105100.1

Sequence Viewer

Length: 954 bp
ATGGACAGTCCCACAAATTTTAAAGTCTCCTTGTCCTTCCTTTTGCTTCTAGTCGGAATAGCTTCTGCTCAGTTGTCCTCTACTTTCTATTCAAGCTCATGTCCCAACGCCCTCTCCACCATCAAATCAGCCGTGGACTCGGCCGTTTCAAGCGAGGCTCGCATGGGAGCCTCCTTGGTCCGCCTCCATTTTCATGATTGCTTTGTTAATGGATGCGATGCTTCGGTACTGTTGGATGACACGGCCAATTTCACTGGCGAGAAGACTGCCGGCCCTAATGCTAATTCTTTGAGGGGATTCGACGTAGTCGACACCATTAAAACTCAACTAGAGAGTCTCTGCCCCGGTGTCTTCTCTTGTGCCGACATATTGGCCGTCGCTGCTAGAGACTCCGTTGTCGCTTTGAATGGACCTAGCTGGACAGTGCAATTGGGGAGAAGGGACTCCACCACCGCGAGTTTAAGTGCTGCTAATACCAACATTCCAGCTCCTACCTTGAATCTTAGTGCCCTAATTACTTCTTTCTCAAACAAAGGCTTTAATGCCAAGGAACTAGTGGCTCTCTCAGGGTCTCATACAATTGGGCAAGCACGGTGCACAACTTTTAGAGCAAGGCTTTACAATGAAGCCAACATAAACTCCTCATTCGCAACATCGCTAAAAGCAAATTGTCCGAGCAGTGGGGGTGATAACAACCTTTCCCCGCTTGATGTCACAACTCCAAACACGTTTGACAACGCTTACTTCAAGAACTTGGTGAGCCAAAAGGGTCTGTTGCACTCCGATCAACAACTCTTTAGCGGCGGTTCCACTAACGCTCAGGTGAATGCTTATAGTAGCAACCCAGGAAGTTTCAGCACGGACTTTGCCAATGCTATGGTGAAGATGGGAAACCTTAGCCCTCTCACGGGCACCAACGGTCAGATTAGGACCGATTGTAAAAAGGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

317

Amino Acids

33.21

Weight (kDa)

6.87

Isoelectric Point (pI)

27.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 281 1.9e-86 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 911
AccI GTMKAC 1 cut(s) 309
AccII CGCG 1 cut(s) 455
AciI CCGC 5 cut(s) 181, 453, 704, 801, 804
AcoI YGGCCR 3 cut(s) 141, 243, 372
AcsI RAATTY 1 cut(s) 16
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 3 cut(s) 680, 907, 908
AflIII ACRYGT 1 cut(s) 726
AgsI TTSAA 5 cut(s) 93, 150, 406, 499, 748
AhlI ACTAGT 1 cut(s) 553
AjnI CCWGG 1 cut(s) 844
AluBI AGCT 4 cut(s) 62, 96, 417, 488
AluI AGCT 4 cut(s) 62, 96, 417, 488
Alw21I GWGCWC 1 cut(s) 599
Alw26I GTCTC 4 cut(s) 31, 341, 381, 576
Alw44I GTGCAC 1 cut(s) 595
AoxI GGCC 4 cut(s) 141, 243, 271, 372
ApaLI GTGCAC 1 cut(s) 595
ApeKI GCWGC 2 cut(s) 380, 467
ApoI RAATTY 1 cut(s) 16
Asp700I GAANNNNTTC 1 cut(s) 61
AspS9I GGNCC 4 cut(s) 178, 272, 410, 930
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 4 cut(s) 698, 769, 835, 892
AvaII GGWCC 3 cut(s) 178, 410, 930
BaeGI GKGCMC 3 cut(s) 511, 599, 914
BanI GGYRCC 1 cut(s) 911
BbsI GAAGAC 2 cut(s) 269, 343
Bbv12I GWGCWC 1 cut(s) 599
BbvI GCAGC 2 cut(s) 367, 454
BccI CCATC 2 cut(s) 128, 880
BceAI ACGGC 4 cut(s) 116, 128, 258, 359
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 1 cut(s) 846
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 4 cut(s) 31, 341, 381, 576
BcuI ACTAGT 1 cut(s) 553
BfaI CTAG 5 cut(s) 50, 329, 384, 414, 554
BisI GCNGC 3 cut(s) 381, 468, 802
BlsI GCNGC 3 cut(s) 382, 469, 803
Bme1390I CCNGG 2 cut(s) 345, 846
Bme18I GGWCC 3 cut(s) 178, 410, 930
BmgT120I GGNCC 4 cut(s) 178, 272, 410, 930
BmiI GGNNCC 3 cut(s) 169, 808, 913
BmrFI CCNGG 2 cut(s) 345, 846
BmsI GCATC 2 cut(s) 203, 208
BpiI GAAGAC 2 cut(s) 269, 343
Bpu10I CCTNAGC 2 cut(s) 819, 896
BpuMI CCSGG 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 5 cut(s) 132, 174, 343, 546, 844
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 623, 653
Bsc4I CCNNNNNNNGG 3 cut(s) 680, 907, 908
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 846
BseDI CCNNGG 5 cut(s) 132, 174, 343, 546, 844
BseGI GGATG 2 cut(s) 218, 241
BseLI CCNNNNNNNGG 3 cut(s) 680, 907, 908
BseMII CTCAG 3 cut(s) 83, 579, 833
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 1 cut(s) 631
BseSI GKGCMC 3 cut(s) 511, 599, 914
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 367, 454
Bsh1236I CGCG 1 cut(s) 455
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 4 cut(s) 143, 245, 273, 374
BshNI GGYRCC 1 cut(s) 911
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 599
BsiSI CCGG 2 cut(s) 270, 345
BslFI GGGAC 2 cut(s) 87, 455
BslI CCNNNNNNNGG 3 cut(s) 680, 907, 908
BsmAI GTCTC 4 cut(s) 31, 341, 381, 576
BsmFI GGGAC 2 cut(s) 87, 455
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 4 cut(s) 143, 245, 273, 374
Bso31I GGTCTC 1 cut(s) 576
Bsp1286I GDGCHC 3 cut(s) 511, 599, 914
Bsp143I GATC 1 cut(s) 784
BspACI CCGC 5 cut(s) 181, 453, 704, 801, 804
BspANI GGCC 4 cut(s) 143, 245, 273, 374
BspCNI CTCAG 3 cut(s) 82, 578, 832
BspFNI CGCG 1 cut(s) 455
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 3 cut(s) 169, 808, 913
BspT107I GGYRCC 1 cut(s) 911
BspTNI GGTCTC 1 cut(s) 576
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 5 cut(s) 132, 174, 343, 546, 844
BssMI GATC 1 cut(s) 784
BssT1I CCWWGG 2 cut(s) 174, 546
Bst2UI CCWGG 1 cut(s) 846
Bst4CI ACNGT 5 cut(s) 8, 231, 424, 594, 920
BstC8I GCNNGC 3 cut(s) 160, 271, 588
BstDEI CTNAG 5 cut(s) 69, 503, 565, 819, 896
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 218, 241
BstFNI CGCG 1 cut(s) 455
BstKTI GATC 1 cut(s) 787
BstMAI GTCTC 4 cut(s) 31, 341, 381, 576
BstMBI GATC 1 cut(s) 784
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 2 cut(s) 159, 380
BstNI CCWGG 1 cut(s) 846
BstSCI CCNGG 2 cut(s) 343, 844
BstSLI GKGCMC 3 cut(s) 511, 599, 914
BstUI CGCG 1 cut(s) 455
BstV1I GCAGC 2 cut(s) 367, 454
BstV2I GAAGAC 2 cut(s) 269, 343
BstXI CCANNNNNNTGG 1 cut(s) 877
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 4 cut(s) 143, 245, 273, 374
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 2 cut(s) 231, 639
BtsCI GGATG 2 cut(s) 218, 241
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 3 cut(s) 252, 429, 685
Cac8I GCNNGC 3 cut(s) 160, 271, 588
CciI TCATGA 1 cut(s) 193
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 4 cut(s) 178, 272, 410, 930
Csp6I GTAC 1 cut(s) 227
CviAII CATG 3 cut(s) 99, 163, 194
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 5 cut(s) 69, 503, 565, 819, 896
DpnI GATC 1 cut(s) 786
DpnII GATC 1 cut(s) 784
DraI TTTAAA 1 cut(s) 22
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
EaeI YGGCCR 3 cut(s) 141, 243, 372
EagI CGGCCG 1 cut(s) 141
EciI GGCGGA 1 cut(s) 170
EclXI CGGCCG 1 cut(s) 141
Eco130I CCWWGG 2 cut(s) 174, 546
Eco31I GGTCTC 1 cut(s) 576
Eco47I GGWCC 3 cut(s) 178, 410, 930
Eco52I CGGCCG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 844
EcoT14I CCWWGG 2 cut(s) 174, 546
ErhI CCWWGG 2 cut(s) 174, 546
FaeI CATG 3 cut(s) 102, 166, 197
FaiI YATR 8 cut(s) 100, 164, 195, 368, 576, 635, 834, 878
FaqI GGGAC 2 cut(s) 87, 455
FatI CATG 3 cut(s) 98, 162, 193
FauI CCCGC 1 cut(s) 711
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 3 cut(s) 381, 468, 802
FokI GGATG 2 cut(s) 225, 248
Fsp4HI GCNGC 3 cut(s) 381, 468, 802
FspBI CTAG 5 cut(s) 50, 329, 384, 414, 554
GluI GCNGC 3 cut(s) 381, 468, 802
HaeIII GGCC 4 cut(s) 143, 245, 273, 374
HapII CCGG 2 cut(s) 270, 345
Hin1II CATG 3 cut(s) 102, 166, 197
HincII GTYRAC 2 cut(s) 310, 949
HindII GTYRAC 2 cut(s) 310, 949
HinfI GANTC 6 cut(s) 137, 297, 334, 389, 443, 499
HpaII CCGG 2 cut(s) 270, 345
HphI GGTGA 4 cut(s) 698, 769, 835, 892
Hpy166II GTNNAC 4 cut(s) 136, 310, 597, 949
Hpy188I TCNGA 4 cut(s) 56, 675, 784, 924
Hpy188III TCNNGA 2 cut(s) 194, 748
Hpy8I GTNNAC 4 cut(s) 136, 310, 597, 949
Hpy99I CGWCG 2 cut(s) 305, 380
HpyAV CCTTC 2 cut(s) 46, 432
HpyCH4III ACNGT 5 cut(s) 8, 231, 424, 594, 920
HpyCH4IV ACGT 2 cut(s) 303, 728
HpyCH4V TGCA 3 cut(s) 427, 597, 778
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 380
HpyF3I CTNAG 5 cut(s) 69, 503, 565, 819, 896
HpySE526I ACGT 2 cut(s) 303, 728
Hsp92II CATG 3 cut(s) 102, 166, 197
KroI GCCGGC 1 cut(s) 269
KroNI GCCGGC 1 cut(s) 271
Kzo9I GATC 1 cut(s) 784
LmnI GCTCC 2 cut(s) 167, 493
LpnPI CCDG 9 cut(s) 240, 283, 358, 403, 498, 552, 806, 831, 858
Lsp1109I GCAGC 2 cut(s) 367, 454
LweI GCATC 2 cut(s) 203, 208
MaeI CTAG 5 cut(s) 50, 329, 384, 414, 554
MaeII ACGT 2 cut(s) 303, 728
MaeIII GTNAC 1 cut(s) 712
MalI GATC 1 cut(s) 786
MboI GATC 1 cut(s) 784
MboII GAAGA 3 cut(s) 274, 343, 895
MfeI CAATTG 2 cut(s) 428, 579
MhlI GDGCHC 3 cut(s) 511, 599, 914
MluCI AATT 7 cut(s) 16, 247, 283, 428, 513, 579, 667
MlyI GAGTC 4 cut(s) 131, 343, 383, 437
MmeI TCCRAC 2 cut(s) 34, 213
MnlI CCTC 8 cut(s) 88, 122, 148, 181, 194, 285, 652, 912
MroNI GCCGGC 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 61
MseI TTAA 5 cut(s) 21, 207, 318, 461, 540
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 2 cut(s) 270, 345
MspR9I CCNGG 2 cut(s) 345, 846
MunI CAATTG 2 cut(s) 428, 579
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 1 cut(s) 846
MvnI CGCG 1 cut(s) 455
MwoI GCNNNNNNNGC 2 cut(s) 159, 380
NaeI GCCGGC 1 cut(s) 271
NciI CCSGG 1 cut(s) 345
NdeII GATC 1 cut(s) 784
NgoMIV GCCGGC 1 cut(s) 269
NlaIII CATG 3 cut(s) 102, 166, 197
NlaIV GGNNCC 3 cut(s) 169, 808, 913
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 712
PagI TCATGA 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PctI GAATGC 1 cut(s) 832
PdiI GCCGGC 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 61
PfeI GAWTC 2 cut(s) 297, 499
PflFI GACNNNGTC 1 cut(s) 305
PkrI GCNGC 3 cut(s) 382, 469, 803
PleI GAGTC 4 cut(s) 131, 342, 383, 437
PpsI GAGTC 4 cut(s) 131, 342, 383, 437
Psp6I CCWGG 1 cut(s) 844
PspGI CCWGG 1 cut(s) 844
PspN4I GGNNCC 3 cut(s) 169, 808, 913
PspPI GGNCC 4 cut(s) 178, 272, 410, 930
PsyI GACNNNGTC 1 cut(s) 305
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 192
SalI GTCGAC 1 cut(s) 308
SaqAI TTAA 5 cut(s) 21, 207, 318, 461, 540
SatI GCNGC 3 cut(s) 381, 468, 802
Sau3AI GATC 1 cut(s) 784
Sau96I GGNCC 4 cut(s) 178, 272, 410, 930
SchI GAGTC 4 cut(s) 131, 343, 383, 437
ScrFI CCNGG 2 cut(s) 345, 846
SduI GDGCHC 3 cut(s) 511, 599, 914
SfaNI GCATC 2 cut(s) 203, 208
SinI GGWCC 3 cut(s) 178, 410, 930
SmiMI CAYNNNNRTG 1 cut(s) 192
SpeI ACTAGT 1 cut(s) 553
Sse9I AATT 7 cut(s) 16, 247, 283, 428, 513, 579, 667
SsiI CCGC 5 cut(s) 181, 453, 704, 801, 804
SspMI CTAG 5 cut(s) 50, 329, 384, 414, 554
StyD4I CCNGG 2 cut(s) 343, 844
StyI CCWWGG 2 cut(s) 174, 546
TaaI ACNGT 5 cut(s) 8, 231, 424, 594, 920
TaiI ACGT 2 cut(s) 306, 731
TaqI TCGA 2 cut(s) 300, 309
TaqII GACCGA 1 cut(s) 947
TasI AATT 7 cut(s) 16, 247, 283, 428, 513, 579, 667
TauI GCSGC 1 cut(s) 804
TfiI GAWTC 2 cut(s) 297, 499
Tru1I TTAA 5 cut(s) 21, 207, 318, 461, 540
Tru9I TTAA 5 cut(s) 21, 207, 318, 461, 540
TscAI CASTG 3 cut(s) 259, 429, 685
TseFI GTSAC 1 cut(s) 712
TseI GCWGC 2 cut(s) 380, 467
Tsp45I GTSAC 1 cut(s) 712
TspDTI ATGAA 2 cut(s) 182, 639
TspGWI ACGGA 2 cut(s) 382, 875
TspRI CASTG 3 cut(s) 259, 429, 685
Tth111I GACNNNGTC 1 cut(s) 305
VneI GTGCAC 1 cut(s) 595
VpaK11BI GGWCC 3 cut(s) 178, 410, 930
XapI RAATTY 1 cut(s) 16
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XmiI GTMKAC 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 61
XspI CTAG 5 cut(s) 50, 329, 384, 414, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.