Rh5CG517600

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005911
Physical Location & Seq
Forward (+)
72347914 .. 72350058
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG517600.1

Sequence Viewer

Length: 957 bp
ATGGCTTTTACCTCACAGAACAACAGCTTCTGCTTCTTGGTGCTTTTGTTCCTGTTTAGCATAGCTTCAGCACAATTGTCCTCAGATTACTATGCAACAAGATGCCCGAAAGCCCTTTCTACAGTTCGGACTGCAGTTATTAATGCTGTGGTGAAGGAGCATCGCATGGGGGCATCCTTGCTCCGTCTCCATTTTCACGATTGCTTTGTTAATGGATGTGATGCATCTGTTCTATTAGATGACACTGCAAATTTTACTGGGGAGAAAACAGCGTTACCAAATTTGGACTCTATAAGAGGATTTGAAGTGATTGATACTATAAAATCTCAACTGGAAAGCATCTGCCCTGGGGTTGTTTCCTGTGCAGACATCCTTGCCATTGCAGCCCGTGATTCAGTTGTTTCATTGGGAGGGCCTTCGTGGATAGTTCAGTTAGGCAGAAGAGATTCCACAACAGCAAGTTTAAGTGCTGCAAATACTGATCTCCCATCTCCAAGCCTAGATGTTAATGACCTCATCTCTGCCTTCTCGAATAAAGGCTTTAGTGCCAAAGATTTGGTAGCTCTCTCAGGATCTCACACAATGGGTCAAGCCAGGTGTGTATTGTTCCGAGACCGGATCTATAATGAGACTGACATCAACTCAGCACTTGCTACATCACTGAAATCAAACTGTCCAAGCTCAGGGAGTGATGACAACCTTTCCCCACTGGATGTTACAAGTCCTGTTTTCTTCGACAACGCTTATTATAAGAACTTGGTTAATAGCAAGGGTCTCTTGCATTCTGACCAACAACTCTTCAGTGGTGGTTCAACAGATTCTCAGGTTACAACTTACAGCACCAACCCTTTAGCTTTCTTTGCAGATTTTGCCAATGCCATGGTGAAAATGGGGAACCTCAACCTGCTTACTGGATCCAATGGTCAAATTCGTACGAACTGCCGCAAAATAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

318

Amino Acids

34.11

Weight (kDa)

5.7

Isoelectric Point (pI)

26.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 282 3.4e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 750
Acc36I ACCTGC 1 cut(s) 912
AciI CCGC 1 cut(s) 943
AclWI GGATC 4 cut(s) 580, 626, 909, 922
AcsI RAATTY 3 cut(s) 250, 280, 927
AcuI CTGAAG 2 cut(s) 51, 784
AfaI GTAC 1 cut(s) 934
AfiI CCNNNNNNNGG 1 cut(s) 683
AgsI TTSAA 2 cut(s) 305, 813
AjnI CCWGG 2 cut(s) 346, 593
AluBI AGCT 5 cut(s) 27, 65, 563, 681, 854
AluI AGCT 5 cut(s) 27, 65, 563, 681, 854
Alw26I GTCTC 4 cut(s) 191, 606, 623, 779
AlwI GGATC 4 cut(s) 580, 626, 909, 922
AlwNI CAGNNNCTG 1 cut(s) 30
AoxI GGCC 1 cut(s) 413
ApeKI GCWGC 2 cut(s) 383, 470
ApoI RAATTY 3 cut(s) 250, 280, 927
AseI ATTAAT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 445
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 163, 895
BamHI GGATCC 1 cut(s) 914
BbvI GCAGC 2 cut(s) 395, 457
BccI CCATC 1 cut(s) 496
BciT130I CCWGG 2 cut(s) 348, 595
BcoDI GTCTC 4 cut(s) 191, 606, 623, 779
BfaI CTAG 1 cut(s) 500
BfmI CTRYAG 2 cut(s) 120, 132
BfuAI ACCTGC 1 cut(s) 912
BisI GCNGC 3 cut(s) 384, 471, 943
BlsI GCNGC 3 cut(s) 385, 472, 944
Bme1390I CCNGG 2 cut(s) 348, 595
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 2 cut(s) 896, 916
BmrFI CCNGG 2 cut(s) 348, 595
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 6 cut(s) 92, 169, 182, 211, 233, 348
BmuI ACTGGG 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 682
BsaI GGTCTC 2 cut(s) 606, 779
BsaJI CCNNGG 3 cut(s) 346, 347, 879
BsaWI WCCGGW 1 cut(s) 615
Bsc4I CCNNNNNNNGG 1 cut(s) 683
Bse1I ACTGG 4 cut(s) 262, 336, 714, 916
Bse3DI GCAATG 1 cut(s) 378
BseBI CCWGG 2 cut(s) 348, 595
BseDI CCNNGG 3 cut(s) 346, 347, 879
BseGI GGATG 4 cut(s) 173, 221, 369, 718
BseLI CCNNNNNNNGG 1 cut(s) 683
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 5 cut(s) 96, 582, 657, 696, 836
BseNI ACTGG 4 cut(s) 262, 336, 714, 916
BseXI GCAGC 2 cut(s) 395, 457
BsgI GTGCAG 1 cut(s) 384
BshFI GGCC 1 cut(s) 415
BsiSI CCGG 1 cut(s) 616
BsiWI CGTACG 1 cut(s) 932
BslI CCNNNNNNNGG 1 cut(s) 683
BsmAI GTCTC 4 cut(s) 191, 606, 623, 779
BsmBI CGTCTC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 1 cut(s) 415
Bso31I GGTCTC 2 cut(s) 606, 779
Bsp143I GATC 4 cut(s) 481, 572, 618, 914
Bsp19I CCATGG 1 cut(s) 879
BspACI CCGC 1 cut(s) 943
BspANI GGCC 1 cut(s) 415
BspCNI CTCAG 5 cut(s) 95, 581, 656, 695, 835
BspLI GGNNCC 2 cut(s) 896, 916
BspMAI CTGCAG 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 912
BspPI GGATC 4 cut(s) 580, 626, 909, 922
BspTNI GGTCTC 2 cut(s) 606, 779
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 4 cut(s) 262, 336, 714, 916
BssECI CCNNGG 3 cut(s) 346, 347, 879
BssMI GATC 4 cut(s) 481, 572, 618, 914
BssT1I CCWWGG 1 cut(s) 879
Bst2UI CCWGG 2 cut(s) 348, 595
Bst4CI ACNGT 2 cut(s) 124, 674
Bst6I CTCTTC 2 cut(s) 436, 803
BstAPI GCANNNNNTGC 1 cut(s) 869
BstDEI CTNAG 5 cut(s) 82, 568, 643, 682, 822
BstDSI CCRYGG 1 cut(s) 879
BstF5I GGATG 4 cut(s) 173, 221, 369, 718
BstKTI GATC 4 cut(s) 484, 575, 621, 917
BstMAI GTCTC 4 cut(s) 191, 606, 623, 779
BstMBI GATC 4 cut(s) 481, 572, 618, 914
BstMWI GCNNNNNNNGC 3 cut(s) 383, 860, 869
BstNI CCWGG 2 cut(s) 348, 595
BstSCI CCNGG 2 cut(s) 346, 593
BstSFI CTRYAG 2 cut(s) 120, 132
BstV1I GCAGC 2 cut(s) 395, 457
BstX2I RGATCY 3 cut(s) 572, 618, 914
BstXI CCANNNNNNTGG 2 cut(s) 556, 880
BstYI RGATCY 3 cut(s) 572, 618, 914
BsuRI GGCC 1 cut(s) 415
BtgI CCRYGG 1 cut(s) 879
BtgZI GCGATG 1 cut(s) 146
BtsCI GGATG 4 cut(s) 173, 221, 369, 718
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 4 cut(s) 243, 659, 707, 808
BveI ACCTGC 1 cut(s) 912
CaiI CAGNNNCTG 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 413
Csp6I GTAC 1 cut(s) 933
CviAII CATG 2 cut(s) 166, 880
CviQI GTAC 1 cut(s) 933
DdeI CTNAG 5 cut(s) 82, 568, 643, 682, 822
DpnI GATC 4 cut(s) 483, 574, 620, 916
DpnII GATC 4 cut(s) 481, 572, 618, 914
Eam1104I CTCTTC 2 cut(s) 436, 803
EarI CTCTTC 2 cut(s) 436, 803
Eco130I CCWWGG 1 cut(s) 879
Eco31I GGTCTC 2 cut(s) 606, 779
Eco57I CTGAAG 2 cut(s) 51, 784
EcoO109I RGGNCCY 1 cut(s) 413
EcoRII CCWGG 2 cut(s) 346, 593
EcoT14I CCWWGG 1 cut(s) 879
EcoT22I ATGCAT 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 879
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 2 cut(s) 169, 883
FaiI YATR 8 cut(s) 62, 93, 167, 293, 320, 624, 750, 881
FalI AAGNNNNNCTT 2 cut(s) 761, 793
FatI CATG 2 cut(s) 165, 879
Fnu4HI GCNGC 3 cut(s) 384, 471, 943
FokI GGATG 4 cut(s) 160, 228, 356, 725
Fsp4HI GCNGC 3 cut(s) 384, 471, 943
FspBI CTAG 1 cut(s) 500
GluI GCNGC 3 cut(s) 384, 471, 943
HaeIII GGCC 1 cut(s) 415
HapII CCGG 1 cut(s) 616
Hin1II CATG 2 cut(s) 169, 883
HinfI GANTC 4 cut(s) 287, 392, 446, 818
HpaII CCGG 1 cut(s) 616
HphI GGTGA 2 cut(s) 163, 895
Hpy188I TCNGA 4 cut(s) 85, 129, 611, 787
Hpy188III TCNNGA 3 cut(s) 197, 529, 570
HpyAV CCTTC 3 cut(s) 148, 426, 535
HpyCH4III ACNGT 2 cut(s) 124, 674
HpyCH4V TGCA 9 cut(s) 95, 134, 224, 248, 365, 383, 473, 781, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 383, 860, 869
HpyF3I CTNAG 5 cut(s) 82, 568, 643, 682, 822
Hsp92II CATG 2 cut(s) 169, 883
Kzo9I GATC 4 cut(s) 481, 572, 618, 914
LmnI GCTCC 2 cut(s) 157, 186
Lsp1109I GCAGC 2 cut(s) 395, 457
LweI GCATC 6 cut(s) 92, 169, 182, 211, 233, 348
MaeI CTAG 1 cut(s) 500
MaeIII GTNAC 3 cut(s) 273, 715, 826
MalI GATC 4 cut(s) 483, 574, 620, 916
MboI GATC 4 cut(s) 481, 572, 618, 914
MboII GAAGA 3 cut(s) 453, 724, 790
MfeI CAATTG 1 cut(s) 74
MflI RGATCY 3 cut(s) 572, 618, 914
MluCI AATT 5 cut(s) 74, 250, 280, 927, 952
MlyI GAGTC 1 cut(s) 281
MnlI CCTC 6 cut(s) 22, 91, 290, 404, 524, 908
Mph1103I ATGCAT 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 445
MseI TTAA 5 cut(s) 141, 210, 464, 507, 762
MspI CCGG 1 cut(s) 616
MspR9I CCNGG 2 cut(s) 348, 595
MunI CAATTG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 781
MvaI CCWGG 2 cut(s) 348, 595
MwoI GCNNNNNNNGC 3 cut(s) 383, 860, 869
NcoI CCATGG 1 cut(s) 879
NdeII GATC 4 cut(s) 481, 572, 618, 914
NlaIII CATG 2 cut(s) 169, 883
NlaIV GGNNCC 2 cut(s) 896, 916
NsiI ATGCAT 1 cut(s) 226
PasI CCCWGGG 1 cut(s) 347
PctI GAATGC 1 cut(s) 781
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 3 cut(s) 392, 446, 818
Pfl23II CGTACG 1 cut(s) 932
PkrI GCNGC 3 cut(s) 385, 472, 944
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PshBI ATTAAT 1 cut(s) 141
PsiI TTATAA 1 cut(s) 750
Psp6I CCWGG 2 cut(s) 346, 593
PspGI CCWGG 2 cut(s) 346, 593
PspLI CGTACG 1 cut(s) 932
PspN4I GGNNCC 2 cut(s) 896, 916
PspPI GGNCC 1 cut(s) 413
PstI CTGCAG 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 30
PsuI RGATCY 3 cut(s) 572, 618, 914
RsaI GTAC 1 cut(s) 934
RsaNI GTAC 1 cut(s) 933
SaqAI TTAA 5 cut(s) 141, 210, 464, 507, 762
SatI GCNGC 3 cut(s) 384, 471, 943
Sau3AI GATC 4 cut(s) 481, 572, 618, 914
Sau96I GGNCC 1 cut(s) 413
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 2 cut(s) 348, 595
SfaNI GCATC 6 cut(s) 92, 169, 182, 211, 233, 348
SfcI CTRYAG 2 cut(s) 120, 132
Sse9I AATT 5 cut(s) 74, 250, 280, 927, 952
SsiI CCGC 1 cut(s) 943
SspMI CTAG 1 cut(s) 500
StyD4I CCNGG 2 cut(s) 346, 593
StyI CCWWGG 1 cut(s) 879
TaaI ACNGT 2 cut(s) 124, 674
TaqI TCGA 2 cut(s) 530, 735
TasI AATT 5 cut(s) 74, 250, 280, 927, 952
TauI GCSGC 1 cut(s) 945
TfiI GAWTC 3 cut(s) 392, 446, 818
Tru1I TTAA 5 cut(s) 141, 210, 464, 507, 762
Tru9I TTAA 5 cut(s) 141, 210, 464, 507, 762
TscAI CASTG 4 cut(s) 250, 666, 714, 808
TseI GCWGC 2 cut(s) 383, 470
TspDTI ATGAA 1 cut(s) 393
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 4 cut(s) 250, 666, 714, 808
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 3 cut(s) 250, 280, 927
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XmnI GAANNNNTTC 1 cut(s) 445
XspI CTAG 1 cut(s) 500
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.