RLG00000036291

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005911
Physical Location & Seq
Forward (+)
78493112 .. 78494668
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036291

Sequence Viewer

Length: 951 bp
ATGGCTTTTACCTCACAGAACAACATCTTCTGCTTCTTGGTGCTTTTGTTCCTGTTTAGCATAGCTTCAGCACAATTGTCCTCAGATTACTATGCAACAAGATGCCCGATAGCCCTTTCTACTGTTCGGACTGCAGTTATTAATGCAGTGGTGAAGGAGCATCGCATGGGGGCATCCTTGCTCCGTCTCCATTTTCACGATTGCTTTGGATGTGATGCATCTGTTCTATTAGATGATACTGCAAATTTTACTGGGGAGAAAACAGCTTTACCAAATTTGGACTCAATAAGAGGATTTGAAGTGATTGATACTATAAAATCTCAACTGGAAAGTATCTGCCCCGGGGTTGTTTCCTGTGCAGACATCCTTGCCATTGCAGCCCGTGATTCAGTTGTTTCATTGGGAGGGCCTTCGTGGATAGTTCAGTTAGGCAGAAGAGATTCCACCACAGCAAGTTTAAGTGCTGCAAATACTGATCTCCCATCTCCAAGCCTAGATGTTAATGACCTCATCTCTGCCTTCTCGAATAAAGGCTTTAGTGCCAAAGATTTGGTAGCCCTCTCAGGATCTCACACAATGGGTCAAGCCAGGTGTGTATTGTTCCGAGACCGGATCTATAATGAGACTAACATCAACTCAGCACTTGCTACATCACTGAAATCAAACTGTCCAAGCTCAGGGAGTGATGACAACCTTTCCCCACTGGATGTTACAAGTCCTGTTTTCTTCGACAACGCTTATTATAAGAACTTGGTTAATAGCAAGGGTCTCTTGCATTCTGACCAACAACTCTTCAGTGGTGGTTCAACAGATTCTCAGGTTACAACTTACAGCACCACCCCTTCAGCTTTCTTTGCAGATTTTGCCAATGCCATGGTGAAAATGGGGAACCTCAACCTGCTTACTGGATCCAATGGTCAAATTCGTACTAACTGCCGCAAAATAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

317

Amino Acids

33.86

Weight (kDa)

5.7

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 42 - 278 1.8e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 744
Acc36I ACCTGC 1 cut(s) 906
AciI CCGC 1 cut(s) 937
AclWI GGATC 4 cut(s) 574, 620, 903, 916
AcsI RAATTY 3 cut(s) 244, 274, 921
AcuI CTGAAG 3 cut(s) 51, 778, 828
AfaI GTAC 1 cut(s) 928
AfiI CCNNNNNNNGG 1 cut(s) 677
AgsI TTSAA 2 cut(s) 299, 807
AjnI CCWGG 1 cut(s) 587
AluBI AGCT 4 cut(s) 65, 266, 675, 848
AluI AGCT 4 cut(s) 65, 266, 675, 848
Alw26I GTCTC 4 cut(s) 191, 600, 617, 773
AlwI GGATC 4 cut(s) 574, 620, 903, 916
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 1 cut(s) 407
ApeKI GCWGC 2 cut(s) 377, 464
ApoI RAATTY 3 cut(s) 244, 274, 921
AseI ATTAAT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 439
AspS9I GGNCC 1 cut(s) 407
AsuC2I CCSGG 2 cut(s) 342, 343
AsuHPI GGTGA 2 cut(s) 163, 889
AvaI CYCGRG 1 cut(s) 341
BamHI GGATCC 1 cut(s) 908
BbvI GCAGC 2 cut(s) 389, 451
BccI CCATC 1 cut(s) 490
BciT130I CCWGG 1 cut(s) 589
BcnI CCSGG 2 cut(s) 342, 343
BcoDI GTCTC 4 cut(s) 191, 600, 617, 773
BfaI CTAG 1 cut(s) 494
BfmI CTRYAG 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 906
BisI GCNGC 3 cut(s) 378, 465, 937
BlsI GCNGC 3 cut(s) 379, 466, 938
Bme1390I CCNGG 3 cut(s) 342, 343, 589
BmeT110I CYCGRG 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 2 cut(s) 890, 910
BmrFI CCNGG 3 cut(s) 342, 343, 589
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 5 cut(s) 92, 169, 182, 205, 227
BmuI ACTGGG 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 676
BpuMI CCSGG 2 cut(s) 342, 343
BsaI GGTCTC 2 cut(s) 600, 773
BsaJI CCNNGG 4 cut(s) 340, 341, 342, 873
BsaWI WCCGGW 1 cut(s) 609
Bsc4I CCNNNNNNNGG 1 cut(s) 677
Bse1I ACTGG 4 cut(s) 256, 330, 708, 910
Bse3DI GCAATG 1 cut(s) 372
BseBI CCWGG 1 cut(s) 589
BseDI CCNNGG 4 cut(s) 340, 341, 342, 873
BseGI GGATG 4 cut(s) 173, 215, 363, 712
BseLI CCNNNNNNNGG 1 cut(s) 677
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 5 cut(s) 96, 576, 651, 690, 830
BseNI ACTGG 4 cut(s) 256, 330, 708, 910
BseXI GCAGC 2 cut(s) 389, 451
BsgI GTGCAG 1 cut(s) 378
BshFI GGCC 1 cut(s) 409
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 2 cut(s) 342, 610
BslI CCNNNNNNNGG 1 cut(s) 677
BsmAI GTCTC 4 cut(s) 191, 600, 617, 773
BsmBI CGTCTC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 775
BsnI GGCC 1 cut(s) 409
Bso31I GGTCTC 2 cut(s) 600, 773
BsoBI CYCGRG 1 cut(s) 341
Bsp143I GATC 4 cut(s) 475, 566, 612, 908
Bsp19I CCATGG 1 cut(s) 873
BspACI CCGC 1 cut(s) 937
BspANI GGCC 1 cut(s) 409
BspCNI CTCAG 5 cut(s) 95, 575, 650, 689, 829
BspLI GGNNCC 2 cut(s) 890, 910
BspMAI CTGCAG 1 cut(s) 136
BspMI ACCTGC 1 cut(s) 906
BspPI GGATC 4 cut(s) 574, 620, 903, 916
BspTNI GGTCTC 2 cut(s) 600, 773
BsrDI GCAATG 1 cut(s) 372
BsrI ACTGG 4 cut(s) 256, 330, 708, 910
BssECI CCNNGG 4 cut(s) 340, 341, 342, 873
BssMI GATC 4 cut(s) 475, 566, 612, 908
BssT1I CCWWGG 1 cut(s) 873
Bst2UI CCWGG 1 cut(s) 589
Bst4CI ACNGT 2 cut(s) 124, 668
Bst6I CTCTTC 2 cut(s) 430, 797
BstAPI GCANNNNNTGC 1 cut(s) 863
BstDEI CTNAG 5 cut(s) 82, 562, 637, 676, 816
BstDSI CCRYGG 1 cut(s) 873
BstF5I GGATG 4 cut(s) 173, 215, 363, 712
BstKTI GATC 4 cut(s) 478, 569, 615, 911
BstMAI GTCTC 4 cut(s) 191, 600, 617, 773
BstMBI GATC 4 cut(s) 475, 566, 612, 908
BstMWI GCNNNNNNNGC 3 cut(s) 377, 854, 863
BstNI CCWGG 1 cut(s) 589
BstSCI CCNGG 3 cut(s) 340, 341, 587
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 389, 451
BstX2I RGATCY 3 cut(s) 566, 612, 908
BstXI CCANNNNNNTGG 2 cut(s) 550, 874
BstYI RGATCY 3 cut(s) 566, 612, 908
BsuRI GGCC 1 cut(s) 409
BtgI CCRYGG 1 cut(s) 873
BtgZI GCGATG 1 cut(s) 146
BtsCI GGATG 4 cut(s) 173, 215, 363, 712
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 4 cut(s) 153, 653, 701, 802
BveI ACCTGC 1 cut(s) 906
Cfr13I GGNCC 1 cut(s) 407
Cfr9I CCCGGG 1 cut(s) 341
Csp6I GTAC 1 cut(s) 927
CviAII CATG 2 cut(s) 166, 874
CviQI GTAC 1 cut(s) 927
DdeI CTNAG 5 cut(s) 82, 562, 637, 676, 816
DpnI GATC 4 cut(s) 477, 568, 614, 910
DpnII GATC 4 cut(s) 475, 566, 612, 908
Eam1104I CTCTTC 2 cut(s) 430, 797
EarI CTCTTC 2 cut(s) 430, 797
Eco130I CCWWGG 1 cut(s) 873
Eco31I GGTCTC 2 cut(s) 600, 773
Eco57I CTGAAG 3 cut(s) 51, 778, 828
Eco88I CYCGRG 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 587
EcoT14I CCWWGG 1 cut(s) 873
EcoT22I ATGCAT 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 873
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 2 cut(s) 169, 877
FaiI YATR 7 cut(s) 62, 93, 167, 314, 618, 744, 875
FalI AAGNNNNNCTT 2 cut(s) 755, 787
FatI CATG 2 cut(s) 165, 873
Fnu4HI GCNGC 3 cut(s) 378, 465, 937
FokI GGATG 4 cut(s) 160, 222, 350, 719
Fsp4HI GCNGC 3 cut(s) 378, 465, 937
FspBI CTAG 1 cut(s) 494
GluI GCNGC 3 cut(s) 378, 465, 937
HaeIII GGCC 1 cut(s) 409
HapII CCGG 2 cut(s) 342, 610
Hin1II CATG 2 cut(s) 169, 877
HinfI GANTC 4 cut(s) 281, 386, 440, 812
HpaII CCGG 2 cut(s) 342, 610
HphI GGTGA 2 cut(s) 163, 889
Hpy188I TCNGA 4 cut(s) 85, 129, 605, 781
Hpy188III TCNNGA 3 cut(s) 197, 523, 564
HpyAV CCTTC 4 cut(s) 148, 420, 529, 852
HpyCH4III ACNGT 2 cut(s) 124, 668
HpyF10VI GCNNNNNNNGC 3 cut(s) 377, 854, 863
HpyF3I CTNAG 5 cut(s) 82, 562, 637, 676, 816
Hsp92II CATG 2 cut(s) 169, 877
Kzo9I GATC 4 cut(s) 475, 566, 612, 908
LmnI GCTCC 2 cut(s) 157, 186
Lsp1109I GCAGC 2 cut(s) 389, 451
LweI GCATC 5 cut(s) 92, 169, 182, 205, 227
MaeI CTAG 1 cut(s) 494
MaeIII GTNAC 2 cut(s) 709, 820
MalI GATC 4 cut(s) 477, 568, 614, 910
MboI GATC 4 cut(s) 475, 566, 612, 908
MboII GAAGA 4 cut(s) 19, 447, 718, 784
MfeI CAATTG 1 cut(s) 74
MflI RGATCY 3 cut(s) 566, 612, 908
MluCI AATT 5 cut(s) 74, 244, 274, 921, 946
MlyI GAGTC 1 cut(s) 275
MnlI CCTC 7 cut(s) 22, 91, 284, 398, 518, 569, 902
Mph1103I ATGCAT 1 cut(s) 220
MroXI GAANNNNTTC 1 cut(s) 439
MseI TTAA 5 cut(s) 141, 458, 501, 756, 949
MspI CCGG 2 cut(s) 342, 610
MspR9I CCNGG 3 cut(s) 342, 343, 589
MunI CAATTG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 775
MvaI CCWGG 1 cut(s) 589
MwoI GCNNNNNNNGC 3 cut(s) 377, 854, 863
NciI CCSGG 2 cut(s) 342, 343
NcoI CCATGG 1 cut(s) 873
NdeII GATC 4 cut(s) 475, 566, 612, 908
NlaIII CATG 2 cut(s) 169, 877
NlaIV GGNNCC 2 cut(s) 890, 910
NsiI ATGCAT 1 cut(s) 220
PctI GAATGC 1 cut(s) 775
PdmI GAANNNNTTC 1 cut(s) 439
PfeI GAWTC 3 cut(s) 386, 440, 812
PkrI GCNGC 3 cut(s) 379, 466, 938
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
PshBI ATTAAT 1 cut(s) 141
PsiI TTATAA 1 cut(s) 744
Psp6I CCWGG 1 cut(s) 587
PspGI CCWGG 1 cut(s) 587
PspN4I GGNNCC 2 cut(s) 890, 910
PspPI GGNCC 1 cut(s) 407
PstI CTGCAG 1 cut(s) 136
PsuI RGATCY 3 cut(s) 566, 612, 908
RsaI GTAC 1 cut(s) 928
RsaNI GTAC 1 cut(s) 927
SaqAI TTAA 5 cut(s) 141, 458, 501, 756, 949
SatI GCNGC 3 cut(s) 378, 465, 937
Sau3AI GATC 4 cut(s) 475, 566, 612, 908
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 3 cut(s) 342, 343, 589
SfaNI GCATC 5 cut(s) 92, 169, 182, 205, 227
SfcI CTRYAG 1 cut(s) 132
SmaI CCCGGG 1 cut(s) 343
Sse9I AATT 5 cut(s) 74, 244, 274, 921, 946
SsiI CCGC 1 cut(s) 937
SspMI CTAG 1 cut(s) 494
StyD4I CCNGG 3 cut(s) 340, 341, 587
StyI CCWWGG 1 cut(s) 873
TaaI ACNGT 2 cut(s) 124, 668
TaqI TCGA 2 cut(s) 524, 729
TasI AATT 5 cut(s) 74, 244, 274, 921, 946
TauI GCSGC 1 cut(s) 939
TfiI GAWTC 3 cut(s) 386, 440, 812
Tru1I TTAA 5 cut(s) 141, 458, 501, 756, 949
Tru9I TTAA 5 cut(s) 141, 458, 501, 756, 949
TscAI CASTG 4 cut(s) 153, 660, 708, 802
TseI GCWGC 2 cut(s) 377, 464
TspDTI ATGAA 1 cut(s) 387
TspGWI ACGGA 1 cut(s) 173
TspMI CCCGGG 1 cut(s) 341
TspRI CASTG 4 cut(s) 153, 660, 708, 802
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 3 cut(s) 244, 274, 921
XcmI CCANNNNNNNNNTGG 1 cut(s) 880
XmaI CCCGGG 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 439
XspI CTAG 1 cut(s) 494
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.