FvH4_6g10250

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0005911
Physical Location & Seq
Reverse (-)
6090011 .. 6092245
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10250.t3

Sequence Viewer

Length: 954 bp
ATGGACACTCCCACAAACTTCAAAGCCTTCTTCTCCTTCTTTTTGCTTCTAGTCGGAATAGCTTCTGCTCAGTTGTCCTCTACTTTCTACTCTAGCTCATGTCCGAAGGCCCTCGCCACCATTAAATCAGCCGTGGACTCGGCTGTTTCGAGCGAGGCTCGCATGGGAGCTTCGTTGCTCCGCCTCCATTTTCATGATTGCTTTGTTAATGGATGCGATGCTTCTGTACTGTTGGACGACACAGCCAATTTCACCGGCGAGAAGACTGCCGGCGCTAATGCTAATTCTTTGAGGGGATTCGACGTAGTTGACACCATCAAATCTCAACTAGAGAGCTTATGTCCCGGTGTCTTCTCTTGTTCTGATATATTGGCCGTCGCTGCTAGAGACTCTGTTGTTGCCTTGGGTGGACCTAGCTGGACAGTGCAACTGGGAAGAAGAGACTCCACCACGGCGAGTTTAAGTGCTGCTAATACCAACATTCCAGCTCCCACCTTGAATCTTAGTGCTCTACTTACTTCTTTCTCAAACAAGGGCTTCAATGCCAAGGAACTAGTGGCTCTCTCAGGGTCTCACACAATTGGGCAAGCAAGGTGCACAACTTTTAGGGCAAGGCTTTACAATGAAGCCAACATAGACTCCTCATTCGCAACATCTCTAAAAGCAAATTGTCCAAGCAGTGGGGGTGATGCCAACCTTTCCCCGCTCGATGTCACAACTCCAAACAAGTTTGACAATGCTTACTTCAAAAACTTGGTGAGCCAAAAGGGTCTGTTGCACTCCGATCAACAACTCTTTAGCGGTGGTTCAACCAACGCTCAGGTGAATGCTTATGTTAGCAACCCAGGAACTTTCAGCACGGACTTCGCCAAGGCCATGGTGAAGATGGGAAACCTTAGCCCTCTCACTGGCACCAACGGTCAGATTAGGACCGATTGTAAGAAGGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

318

Amino Acids

33.28

Weight (kDa)

8.09

Isoelectric Point (pI)

28.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 2 - 212 1.2e-72 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 911
AccB7I CCANNNNNTGG 1 cut(s) 680
AccBSI CCGCTC 1 cut(s) 706
AciI CCGC 3 cut(s) 181, 704, 801
AcoI YGGCCR 1 cut(s) 372
AfaI GTAC 1 cut(s) 228
AfiI CCNNNNNNNGG 2 cut(s) 680, 908
AgsI TTSAA 5 cut(s) 22, 499, 541, 748, 810
AhlI ACTAGT 1 cut(s) 553
AjnI CCWGG 1 cut(s) 844
AluBI AGCT 6 cut(s) 62, 96, 170, 336, 417, 488
AluI AGCT 6 cut(s) 62, 96, 170, 336, 417, 488
Alw21I GWGCWC 2 cut(s) 511, 599
Alw26I GTCTC 3 cut(s) 381, 435, 576
Alw44I GTGCAC 1 cut(s) 595
AoxI GGCC 3 cut(s) 108, 372, 873
ApaLI GTGCAC 1 cut(s) 595
ApeKI GCWGC 2 cut(s) 380, 467
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
Asp700I GAANNNNTTC 1 cut(s) 61
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 3 cut(s) 109, 410, 930
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 5 cut(s) 244, 698, 769, 835, 892
AvaII GGWCC 2 cut(s) 410, 930
BaeGI GKGCMC 1 cut(s) 599
BanI GGYRCC 1 cut(s) 911
BbsI GAAGAC 2 cut(s) 269, 343
Bbv12I GWGCWC 2 cut(s) 511, 599
BbvI GCAGC 2 cut(s) 367, 454
BccI CCATC 2 cut(s) 323, 880
BceAI ACGGC 3 cut(s) 116, 359, 468
BcgI CGANNNNNNTGC 4 cut(s) 248, 282, 847, 881
BciT130I CCWGG 1 cut(s) 846
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 3 cut(s) 381, 435, 576
BcuI ACTAGT 1 cut(s) 553
BfaI CTAG 6 cut(s) 50, 93, 329, 384, 414, 554
BfoI RGCGCY 1 cut(s) 276
BisI GCNGC 2 cut(s) 381, 468
BlsI GCNGC 2 cut(s) 382, 469
Bme1390I CCNGG 2 cut(s) 345, 846
Bme18I GGWCC 2 cut(s) 410, 930
BmgT120I GGNCC 3 cut(s) 109, 410, 930
BmiI GGNNCC 1 cut(s) 913
BmrFI CCNGG 2 cut(s) 345, 846
BmrI ACTGGG 1 cut(s) 440
BmsI GCATC 3 cut(s) 203, 208, 679
BmuI ACTGGG 1 cut(s) 440
BpiI GAAGAC 2 cut(s) 269, 343
BplI GAGNNNNNCTC 2 cut(s) 142, 174
Bpu10I CCTNAGC 2 cut(s) 819, 896
BpuMI CCSGG 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 7 cut(s) 132, 402, 450, 546, 844, 870, 876
BsaXI ACNNNNNCTCC 2 cut(s) 623, 653
Bsc4I CCNNNNNNNGG 2 cut(s) 680, 908
Bse118I RCCGGY 2 cut(s) 254, 269
Bse1I ACTGG 2 cut(s) 435, 913
BseBI CCWGG 1 cut(s) 846
BseDI CCNNGG 7 cut(s) 132, 402, 450, 546, 844, 870, 876
BseGI GGATG 1 cut(s) 218
BseLI CCNNNNNNNGG 2 cut(s) 680, 908
BseMII CTCAG 3 cut(s) 83, 579, 833
BseNI ACTGG 2 cut(s) 435, 913
BseRI GAGGAG 1 cut(s) 631
BseSI GKGCMC 1 cut(s) 599
BseXI GCAGC 2 cut(s) 367, 454
BshFI GGCC 3 cut(s) 110, 374, 875
BshNI GGYRCC 1 cut(s) 911
BsiHKAI GWGCWC 2 cut(s) 511, 599
BsiSI CCGG 3 cut(s) 255, 270, 345
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 680, 908
BsmAI GTCTC 3 cut(s) 381, 435, 576
BsmFI GGGAC 1 cut(s) 327
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 3 cut(s) 110, 374, 875
Bso31I GGTCTC 1 cut(s) 576
Bsp1286I GDGCHC 2 cut(s) 511, 599
Bsp143I GATC 1 cut(s) 784
Bsp19I CCATGG 1 cut(s) 876
BspACI CCGC 3 cut(s) 181, 704, 801
BspANI GGCC 3 cut(s) 110, 374, 875
BspCNI CTCAG 3 cut(s) 82, 578, 832
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 913
BspT107I GGYRCC 1 cut(s) 911
BspTNI GGTCTC 1 cut(s) 576
BsrBI CCGCTC 1 cut(s) 706
BsrFI RCCGGY 2 cut(s) 254, 269
BsrI ACTGG 2 cut(s) 435, 913
BssAI RCCGGY 2 cut(s) 254, 269
BssECI CCNNGG 7 cut(s) 132, 402, 450, 546, 844, 870, 876
BssMI GATC 1 cut(s) 784
BssT1I CCWWGG 4 cut(s) 402, 546, 870, 876
Bst2UI CCWGG 1 cut(s) 846
Bst4CI ACNGT 3 cut(s) 231, 424, 920
Bst6I CTCTTC 1 cut(s) 433
BstC8I GCNNGC 3 cut(s) 160, 271, 588
BstDEI CTNAG 5 cut(s) 69, 503, 565, 819, 896
BstDSI CCRYGG 3 cut(s) 132, 450, 876
BstF5I GGATG 1 cut(s) 218
BstH2I RGCGCY 1 cut(s) 276
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 1 cut(s) 787
BstMAI GTCTC 3 cut(s) 381, 435, 576
BstMBI GATC 1 cut(s) 784
BstMWI GCNNNNNNNGC 2 cut(s) 159, 380
BstNI CCWGG 1 cut(s) 846
BstSCI CCNGG 2 cut(s) 343, 844
BstSLI GKGCMC 1 cut(s) 599
BstV1I GCAGC 2 cut(s) 367, 454
BstV2I GAAGAC 2 cut(s) 269, 343
BstXI CCANNNNNNTGG 1 cut(s) 877
BsuRI GGCC 3 cut(s) 110, 374, 875
BtgI CCRYGG 3 cut(s) 132, 450, 876
BtgZI GCGATG 1 cut(s) 231
BtsCI GGATG 1 cut(s) 218
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 3 cut(s) 429, 685, 906
Cac8I GCNNGC 3 cut(s) 160, 271, 588
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 275
Cfr10I RCCGGY 2 cut(s) 254, 269
Cfr13I GGNCC 3 cut(s) 109, 410, 930
Csp6I GTAC 1 cut(s) 227
CviAII CATG 4 cut(s) 99, 163, 194, 877
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 5 cut(s) 69, 503, 565, 819, 896
DpnI GATC 1 cut(s) 786
DpnII GATC 1 cut(s) 784
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
EciI GGCGGA 1 cut(s) 170
Eco130I CCWWGG 4 cut(s) 402, 546, 870, 876
Eco31I GGTCTC 1 cut(s) 576
Eco47I GGWCC 2 cut(s) 410, 930
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 844
EcoT14I CCWWGG 4 cut(s) 402, 546, 870, 876
ErhI CCWWGG 4 cut(s) 402, 546, 870, 876
FaeI CATG 4 cut(s) 102, 166, 197, 880
FaiI YATR 8 cut(s) 100, 164, 195, 340, 368, 635, 834, 878
FaqI GGGAC 1 cut(s) 327
FatI CATG 4 cut(s) 98, 162, 193, 876
FauI CCCGC 1 cut(s) 711
Fnu4HI GCNGC 2 cut(s) 381, 468
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 2 cut(s) 381, 468
FspBI CTAG 6 cut(s) 50, 93, 329, 384, 414, 554
GlaI GCGC 1 cut(s) 274
GluI GCNGC 2 cut(s) 381, 468
HaeII RGCGCY 1 cut(s) 276
HaeIII GGCC 3 cut(s) 110, 374, 875
HapII CCGG 3 cut(s) 255, 270, 345
HhaI GCGC 1 cut(s) 275
Hin1II CATG 4 cut(s) 102, 166, 197, 880
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HincII GTYRAC 2 cut(s) 310, 949
HindII GTYRAC 2 cut(s) 310, 949
HinfI GANTC 6 cut(s) 137, 297, 389, 443, 499, 638
HpaII CCGG 3 cut(s) 255, 270, 345
HphI GGTGA 5 cut(s) 244, 698, 769, 835, 892
Hpy166II GTNNAC 5 cut(s) 136, 310, 410, 597, 949
Hpy188I TCNGA 5 cut(s) 56, 105, 364, 784, 924
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 5 cut(s) 136, 310, 410, 597, 949
Hpy99I CGWCG 2 cut(s) 305, 380
HpyAV CCTTC 4 cut(s) 37, 46, 100, 937
HpyCH4III ACNGT 3 cut(s) 231, 424, 920
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 3 cut(s) 427, 597, 778
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 380
HpyF3I CTNAG 5 cut(s) 69, 503, 565, 819, 896
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 4 cut(s) 102, 166, 197, 880
HspAI GCGC 1 cut(s) 273
KroI GCCGGC 1 cut(s) 269
KroNI GCCGGC 1 cut(s) 271
Kzo9I GATC 1 cut(s) 784
LmnI GCTCC 3 cut(s) 167, 183, 493
Lsp1109I GCAGC 2 cut(s) 367, 454
LweI GCATC 3 cut(s) 203, 208, 679
MaeI CTAG 6 cut(s) 50, 93, 329, 384, 414, 554
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 712
MalI GATC 1 cut(s) 786
MbiI CCGCTC 1 cut(s) 706
MboI GATC 1 cut(s) 784
MboII GAAGA 6 cut(s) 22, 274, 343, 447, 450, 895
MfeI CAATTG 1 cut(s) 579
MhlI GDGCHC 2 cut(s) 511, 599
MluCI AATT 4 cut(s) 247, 283, 579, 667
MlyI GAGTC 4 cut(s) 131, 383, 437, 632
MmeI TCCRAC 2 cut(s) 34, 213
MnlI CCTC 7 cut(s) 88, 122, 148, 194, 285, 652, 912
MroNI GCCGGC 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 61
MseI TTAA 3 cut(s) 123, 207, 461
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 3 cut(s) 255, 270, 345
MspR9I CCNGG 2 cut(s) 345, 846
MunI CAATTG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 1 cut(s) 846
MwoI GCNNNNNNNGC 2 cut(s) 159, 380
NaeI GCCGGC 1 cut(s) 271
NciI CCSGG 1 cut(s) 345
NcoI CCATGG 1 cut(s) 876
NdeII GATC 1 cut(s) 784
NgoMIV GCCGGC 1 cut(s) 269
NlaIII CATG 4 cut(s) 102, 166, 197, 880
NlaIV GGNNCC 1 cut(s) 913
NmeAIII GCCGAG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 712
PagI TCATGA 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PctI GAATGC 1 cut(s) 832
PdiI GCCGGC 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 61
PfeI GAWTC 2 cut(s) 297, 499
PflMI CCANNNNNTGG 1 cut(s) 680
PkrI GCNGC 2 cut(s) 382, 469
PleI GAGTC 4 cut(s) 131, 383, 437, 632
PpsI GAGTC 4 cut(s) 131, 383, 437, 632
Psp6I CCWGG 1 cut(s) 844
PspGI CCWGG 1 cut(s) 844
PspN4I GGNNCC 1 cut(s) 913
PspPI GGNCC 3 cut(s) 109, 410, 930
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 3 cut(s) 123, 207, 461
SatI GCNGC 2 cut(s) 381, 468
Sau3AI GATC 1 cut(s) 784
Sau96I GGNCC 3 cut(s) 109, 410, 930
SchI GAGTC 4 cut(s) 131, 383, 437, 632
ScrFI CCNGG 2 cut(s) 345, 846
SduI GDGCHC 2 cut(s) 511, 599
SfaNI GCATC 3 cut(s) 203, 208, 679
SgrAI CRCCGGYG 1 cut(s) 254
SinI GGWCC 2 cut(s) 410, 930
SmiMI CAYNNNNRTG 1 cut(s) 192
SpeI ACTAGT 1 cut(s) 553
Sse9I AATT 4 cut(s) 247, 283, 579, 667
SsiI CCGC 3 cut(s) 181, 704, 801
SspMI CTAG 6 cut(s) 50, 93, 329, 384, 414, 554
StyD4I CCNGG 2 cut(s) 343, 844
StyI CCWWGG 4 cut(s) 402, 546, 870, 876
TaaI ACNGT 3 cut(s) 231, 424, 920
TaiI ACGT 1 cut(s) 306
TaqI TCGA 3 cut(s) 149, 300, 708
TaqII GACCGA 1 cut(s) 947
TasI AATT 4 cut(s) 247, 283, 579, 667
TatI WGTACW 1 cut(s) 226
TfiI GAWTC 2 cut(s) 297, 499
Tru1I TTAA 3 cut(s) 123, 207, 461
Tru9I TTAA 3 cut(s) 123, 207, 461
TscAI CASTG 3 cut(s) 429, 685, 913
TseFI GTSAC 1 cut(s) 712
TseI GCWGC 2 cut(s) 380, 467
Tsp45I GTSAC 1 cut(s) 712
TspDTI ATGAA 2 cut(s) 182, 639
TspGWI ACGGA 1 cut(s) 875
TspRI CASTG 3 cut(s) 429, 685, 913
Van91I CCANNNNNTGG 1 cut(s) 680
VneI GTGCAC 1 cut(s) 595
VpaK11BI GGWCC 2 cut(s) 410, 930
XcmI CCANNNNNNNNNTGG 2 cut(s) 553, 883
XmnI GAANNNNTTC 1 cut(s) 61
XspI CTAG 6 cut(s) 50, 93, 329, 384, 414, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.