Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005911

Physical Location & Seq

Genomic Coordinates Reverse (-)

3248382 .. 3250316

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G044900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCTTTTATCTCACACTATAACAGATTCTGCTTCTTTGTGCTTTTGATGCTGCTTAGGATAGCATCTGCACAATTGTCCTCGGATTATTATGCAACAACGTGCCCCCGAGCCCTTTCTGTCGTTCGGAGTTCAGTTATTAATGCGGTGGTGAAGGAGCATCGGATGGGGGCGTCCTTGCTCCGTCTCCATTTCCATGATTGCTTTGTTAATGGATGTGATGCATCTGTATTATTAGACGACACTTCAAATTTCACTGGGGAAAAGACAGCTTTACCAAATGTAAGATCATTGAGGGGATTCGAAGTGATAGATACTATAAAATCTCAGCTAGAAAGTCTCTGCCCCGGTGTTGTTTCGTGTGCAGATATCCTTGCCGTTGCAGCCCGCGATTCAGTTCTTTTATTTGGTGGCCCTTCATGGACAGTTCAGTTGGGCAGAAGAGACTCAACCACAGCAAGTTTAAGTGATGCAAATACTGAACTCCCATCTCCAAGCCTAGATCTTAAAGACCTCATCTCTTCGTTCTCAACTAAAGGATTTAGTGCCAAAGAAATGGTGGCTCTCTCTGGATCTCACACAATGGGTCAAGCCAGGTGTCAAATGTTCCGAGACAGAATATATAATGAGACTAACATCAATTCAGAATTTGCTACCTTCTTGAAATCAAACTGTACTCAGAGCTCTGGGACTGATGACAACCTTTCTCCACTGGATATTACAAGCCCGGTTTTCTTTGATAACGCTTATTTCAAGAACTTGGTGGATAGCAAGGGTCTCTTGCATTCTGATCAGCAACTTTTCAGTGGTGGTTCAACAGACTCTCTGGTTACCACTTATAGCAACAGCTCTGGAACTTTTTATACAGATTTTGCCAATGCCATGTTGAAAATGGGGAACCTTAGCCCGCTTACAGGAACTAGCGGTCAAATTCGTACCAACTGTCGCAAAACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

320

Amino Acids

34.75

Weight (kDa)

6.3

Isoelectric Point (pI)

36.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005911)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40081 FvH4_6g10250 FvH4_6g10250 FvH4_6g10250
malus_domestica	MD03G1058900.v1.1 MD04G1170900.v1.1 MD12G1184600.v1.1
prunus_persica	Prupe.6G044900_v2.0.a1 Prupe.6G289400_v2.0.a1 Prupe.6G289400_v2.0.a1
pyrus_communis	pycom04g15160 pycom12g17350
rosa_chinensis	RchiOBHm_Chr3g0461001 RchiOBHm_Chr5g0072281
rosa_laevigata	RLG00000024959 RLG00000036291
rosa_multiflora	Rmu_co8448951.1_g000001 Rmu_sc0006670.1_g000023 Rmu_sc0007017.1_g000015
rosa_roxburghii	Rroxscaffold_6G00418950
rosa_rugosa	Rorug03G0047700
rosa_samantha	Rh3AG105100 Rh3CG110400 Rh3DG110700 Rh5BG493600 Rh5CG517600
rosa_wichuraiana	Rw3G008990 Rw5G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	390
AciI	CCGC	4 cut(s)	146, 388, 908, 924
AclWI	GGATC	1 cut(s)	580
AcsI	RAATTY	3 cut(s)	250, 647, 930
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	2 cut(s)	676, 937
AfiI	CCNNNNNNNGG	1 cut(s)	914
AgsI	TTSAA	5 cut(s)	249, 664, 754, 816, 889
AjnI	CCWGG	1 cut(s)	593
AluBI	AGCT	4 cut(s)	272, 331, 684, 849
AluI	AGCT	4 cut(s)	272, 331, 684, 849
Alw21I	GWGCWC	1 cut(s)	686
Alw26I	GTCTC	6 cut(s)	191, 344, 438, 606, 623, 782
AlwI	GGATC	1 cut(s)	580
AlwNI	CAGNNNCTG	1 cut(s)	30
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	2 cut(s)	52, 383
ApoI	RAATTY	3 cut(s)	250, 647, 930
AseI	ATTAAT	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	413
AsuC2I	CCSGG	2 cut(s)	348, 728
AsuHPI	GGTGA	1 cut(s)	163
AsuII	TTCGAA	1 cut(s)	303
AvaI	CYCGRG	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	107
BanII	GRGCYC	2 cut(s)	115, 686
Bbv12I	GWGCWC	1 cut(s)	686
BbvI	GCAGC	2 cut(s)	39, 395
BccI	CCATC	2 cut(s)	160, 496
BceAI	ACGGC	1 cut(s)	362
BciT130I	CCWGG	1 cut(s)	595
BclI	TGATCA	1 cut(s)	790
BcnI	CCSGG	2 cut(s)	348, 728
BcoDI	GTCTC	6 cut(s)	191, 344, 438, 606, 623, 782
BfaI	CTAG	3 cut(s)	332, 500, 921
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	2 cut(s)	53, 384
BlsI	GCNGC	2 cut(s)	54, 385
Bme1390I	CCNGG	3 cut(s)	348, 595, 728
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	899
BmrFI	CCNGG	3 cut(s)	348, 595, 728
BmrI	ACTGGG	1 cut(s)	267
BmsI	GCATC	6 cut(s)	39, 74, 169, 211, 233, 460
BmuI	ACTGGG	1 cut(s)	267
Bpu10I	CCTNAGC	2 cut(s)	56, 902
Bpu14I	TTCGAA	1 cut(s)	303
BpuMI	CCSGG	2 cut(s)	348, 728
BsaHI	GRCGYC	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	782
BsaJI	CCNNGG	2 cut(s)	81, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	914
Bse1I	ACTGG	2 cut(s)	262, 717
BseBI	CCWGG	1 cut(s)	595
BseDI	CCNNGG	2 cut(s)	81, 346
BseGI	GGATG	2 cut(s)	171, 221
BseLI	CCNNNNNNNGG	1 cut(s)	914
BseMII	CTCAG	2 cut(s)	341, 692
BseNI	ACTGG	2 cut(s)	262, 717
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	39, 395
BsgI	GTGCAG	2 cut(s)	54, 384
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	686
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	348, 728
BslFI	GGGAC	1 cut(s)	703
BslI	CCNNNNNNNGG	1 cut(s)	914
BsmAI	GTCTC	6 cut(s)	191, 344, 438, 606, 623, 782
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	703
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	1 cut(s)	414
Bso31I	GGTCTC	1 cut(s)	782
BsoBI	CYCGRG	1 cut(s)	108
Bsp119I	TTCGAA	1 cut(s)	303
Bsp1286I	GDGCHC	3 cut(s)	107, 115, 686
Bsp143I	GATC	4 cut(s)	287, 502, 572, 790
BspACI	CCGC	4 cut(s)	146, 388, 908, 924
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	2 cut(s)	340, 691
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	899
BspPI	GGATC	1 cut(s)	580
BspT104I	TTCGAA	1 cut(s)	303
BspTNI	GGTCTC	1 cut(s)	782
BsrI	ACTGG	2 cut(s)	262, 717
BssECI	CCNNGG	2 cut(s)	81, 346
BssMI	GATC	4 cut(s)	287, 502, 572, 790
BssNI	GRCGYC	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	595
Bst4CI	ACNGT	3 cut(s)	427, 674, 944
Bst6I	CTCTTC	2 cut(s)	436, 526
BstACI	GRCGYC	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	388, 908
BstDEI	CTNAG	4 cut(s)	56, 327, 678, 902
BstEII	GGTNACC	1 cut(s)	829
BstF5I	GGATG	2 cut(s)	171, 221
BstFNI	CGCG	1 cut(s)	390
BstKTI	GATC	4 cut(s)	290, 505, 575, 793
BstMAI	GTCTC	6 cut(s)	191, 344, 438, 606, 623, 782
BstMBI	GATC	4 cut(s)	287, 502, 572, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 383
BstNI	CCWGG	1 cut(s)	595
BstPI	GGTNACC	1 cut(s)	829
BstSCI	CCNGG	3 cut(s)	346, 593, 726
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	39, 395
BstX2I	RGATCY	2 cut(s)	502, 572
BstXI	CCANNNNNNTGG	1 cut(s)	556
BstYI	RGATCY	2 cut(s)	502, 572
BsuRI	GGCC	1 cut(s)	414
BtsCI	GGATG	2 cut(s)	171, 221
BtsIMutI	CAGTG	3 cut(s)	255, 710, 811
Cac8I	GCNNGC	2 cut(s)	388, 908
CaiI	CAGNNNCTG	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	675, 936
CviAII	CATG	3 cut(s)	197, 420, 883
CviQI	GTAC	2 cut(s)	675, 936
DdeI	CTNAG	4 cut(s)	56, 327, 678, 902
DpnI	GATC	4 cut(s)	289, 504, 574, 792
DpnII	GATC	4 cut(s)	287, 502, 572, 790
Eam1104I	CTCTTC	2 cut(s)	436, 526
EarI	CTCTTC	2 cut(s)	436, 526
Ecl136II	GAGCTC	1 cut(s)	684
Eco24I	GRGCYC	2 cut(s)	115, 686
Eco31I	GGTCTC	1 cut(s)	782
Eco32I	GATATC	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	684
Eco88I	CYCGRG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	829
EcoICRI	GAGCTC	1 cut(s)	684
EcoO65I	GGTNACC	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	593
EcoRV	GATATC	1 cut(s)	370
EcoT22I	ATGCAT	1 cut(s)	226
EcoT38I	GRGCYC	2 cut(s)	115, 686
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	3 cut(s)	200, 423, 886
FalI	AAGNNNNNCTT	2 cut(s)	764, 796
FaqI	GGGAC	1 cut(s)	703
FatI	CATG	3 cut(s)	196, 419, 882
FauI	CCCGC	2 cut(s)	395, 915
FbaI	TGATCA	1 cut(s)	790
Fnu4HI	GCNGC	2 cut(s)	53, 384
FokI	GGATG	2 cut(s)	178, 228
FriOI	GRGCYC	2 cut(s)	115, 686
Fsp4HI	GCNGC	2 cut(s)	53, 384
FspBI	CTAG	3 cut(s)	332, 500, 921
GluI	GCNGC	2 cut(s)	53, 384
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	2 cut(s)	348, 728
HgaI	GACGC	1 cut(s)	162
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	3 cut(s)	200, 423, 886
HinfI	GANTC	5 cut(s)	27, 300, 392, 446, 821
HpaII	CCGG	2 cut(s)	348, 728
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	7 cut(s)	85, 129, 165, 611, 646, 681, 790
Hpy188III	TCNNGA	4 cut(s)	570, 661, 754, 852
HpyAV	CCTTC	3 cut(s)	148, 426, 667
HpyCH4III	ACNGT	3 cut(s)	427, 674, 944
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	7 cut(s)	71, 95, 224, 365, 383, 473, 784
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 383
HpyF3I	CTNAG	4 cut(s)	56, 327, 678, 902
HpySE526I	ACGT	1 cut(s)	101
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	3 cut(s)	200, 423, 886
Ksp22I	TGATCA	1 cut(s)	790
Kzo9I	GATC	4 cut(s)	287, 502, 572, 790
LmnI	GCTCC	2 cut(s)	157, 186
Lsp1109I	GCAGC	2 cut(s)	39, 395
LweI	GCATC	6 cut(s)	39, 74, 169, 211, 233, 460
MaeI	CTAG	3 cut(s)	332, 500, 921
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	1 cut(s)	829
MalI	GATC	4 cut(s)	289, 504, 574, 792
MboI	GATC	4 cut(s)	287, 502, 572, 790
MboII	GAAGA	2 cut(s)	453, 513
MfeI	CAATTG	1 cut(s)	74
MflI	RGATCY	2 cut(s)	502, 572
MhlI	GDGCHC	3 cut(s)	107, 115, 686
MluCI	AATT	6 cut(s)	74, 250, 640, 647, 930, 955
MlyI	GAGTC	2 cut(s)	440, 815
MnlI	CCTC	3 cut(s)	91, 288, 524
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	4 cut(s)	141, 210, 464, 507
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	2 cut(s)	348, 728
MspR9I	CCNGG	3 cut(s)	348, 595, 728
MunI	CAATTG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	1 cut(s)	595
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	49, 383
NciI	CCSGG	2 cut(s)	348, 728
NdeII	GATC	4 cut(s)	287, 502, 572, 790
NlaIII	CATG	3 cut(s)	200, 423, 886
NlaIV	GGNNCC	1 cut(s)	899
NsiI	ATGCAT	1 cut(s)	226
NspV	TTCGAA	1 cut(s)	303
PctI	GAATGC	1 cut(s)	784
PfeI	GAWTC	3 cut(s)	27, 300, 392
PkrI	GCNGC	2 cut(s)	54, 385
PleI	GAGTC	2 cut(s)	440, 815
PpsI	GAGTC	2 cut(s)	440, 815
PshBI	ATTAAT	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	686
Psp6I	CCWGG	1 cut(s)	593
PspEI	GGTNACC	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	593
PspN4I	GGNNCC	1 cut(s)	899
PspPI	GGNCC	1 cut(s)	413
PsrI	GAACNNNNNNTAC	2 cut(s)	847, 879
PstNI	CAGNNNCTG	1 cut(s)	30
PsuI	RGATCY	2 cut(s)	502, 572
RsaI	GTAC	2 cut(s)	676, 937
RsaNI	GTAC	2 cut(s)	675, 936
RseI	CAYNNNNRTG	1 cut(s)	195
SacI	GAGCTC	1 cut(s)	686
SaqAI	TTAA	4 cut(s)	141, 210, 464, 507
SatI	GCNGC	2 cut(s)	53, 384
Sau3AI	GATC	4 cut(s)	287, 502, 572, 790
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	2 cut(s)	440, 815
ScrFI	CCNGG	3 cut(s)	348, 595, 728
SduI	GDGCHC	3 cut(s)	107, 115, 686
SfaNI	GCATC	6 cut(s)	39, 74, 169, 211, 233, 460
SfuI	TTCGAA	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	6 cut(s)	74, 250, 640, 647, 930, 955
SsiI	CCGC	4 cut(s)	146, 388, 908, 924
SspMI	CTAG	3 cut(s)	332, 500, 921
SstI	GAGCTC	1 cut(s)	686
StyD4I	CCNGG	3 cut(s)	346, 593, 726
TaaI	ACNGT	3 cut(s)	427, 674, 944
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	303
TasI	AATT	6 cut(s)	74, 250, 640, 647, 930, 955
TatI	WGTACW	1 cut(s)	674
TfiI	GAWTC	3 cut(s)	27, 300, 392
Tru1I	TTAA	4 cut(s)	141, 210, 464, 507
Tru9I	TTAA	4 cut(s)	141, 210, 464, 507
TscAI	CASTG	3 cut(s)	262, 717, 811
TseI	GCWGC	2 cut(s)	52, 383
TspDTI	ATGAA	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	3 cut(s)	262, 717, 811
VspI	ATTAAT	1 cut(s)	141
XapI	RAATTY	3 cut(s)	250, 647, 930
XcmI	CCANNNNNNNNNTGG	2 cut(s)	556, 889
XspI	CTAG	3 cut(s)	332, 500, 921
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.