MD04G1170900.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0005911
Physical Location & Seq
Forward (+)
26248958 .. 26251656
2699 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1170900.v1.1.491

Sequence Viewer

Length: 975 bp
ATGGGTTCATATATTACTGGTTCATGCACTCCCACAAACACTAAAATCTCATTGTCATTATTATTCCTTCTTGTTGGAGTAGCTTCTGCTCAATTGTCCTCTACTTTCTATGGAACATCGTGTCCTAATGCCCTGTCCACCATAAAATCGGCAGTGGACTCAGCGGTGTCGAAGGAAGCTCGCATGGGAGCTTCCTTGCTTCGTCTTCATTTCCATGATTGCTTTGTTAATGGATGTGATGCTTCGGTTCTGCTGGATGACACAGCCAATTTCACAGGAGAGAAAACAGCAGGTGCTAATGCTAATTCTTTGAGGGGATTTGATGTAATCGATACAATTAAATCTCAATTGGAGAGTCTCTGCCCCAAAGTAGTCTCTTGTGCTGACATCTTAACTGTTGCTGCTAGGGACTCTATTGTTGCATTGGGTGGACTTACCTATACAGTGCCATTGGGCAGAAGAGACTCCACCACAGCAAGCCTAAGTGCTGCCAATTCCAACATACCCGCTCCCACATTGAACCTTTCTGCGCTTATTACTGCTTTCTCAAACAAAGGCTTCACTGCCAAGGAACTAGTGGCCCTCTCAGGATCGCATACAATTGGGCAAGCTAGGTGCACAACATTCCGGACGCGTCTTTACAATGAAGCAAACATAAACGCTTCATTTGCAACATCACTGAAATCAAGTTGTCCAACTAGTGGAGGCGATAACAATCTCTCCCCACTGGATGTCACAAGTCCAACATCTTTTGACAATGCTTATTTCAGCAATTTGGTGAGCCAAAGGGGCCTATTGCACTCTGACCAACAGCTCTTTAGCGGTGGGTCTACCGACTCTCAGGTGAATGCTTACGTGAGCAATCCAGCAACCTTCAGAACCGACTTTGCCAATGCTATGATAAAGATGGGAAACCTTAGCCCTCTCACCGGCACCAATGGTCAGATTAGGACCAACTGTAGAAAAGTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

325

Amino Acids

33.92

Weight (kDa)

8.36

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 49 - 288 9.5e-86 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 281
Acc36I ACCTGC 1 cut(s) 281
AccB1I GGYRCC 1 cut(s) 932
AccB7I CCANNNNNTGG 1 cut(s) 701
AccBSI CCGCTC 1 cut(s) 509
AccI GTMKAC 1 cut(s) 830
AccII CGCG 1 cut(s) 634
AccIII TCCGGA 1 cut(s) 627
AciI CCGC 3 cut(s) 164, 507, 822
AclWI GGATC 1 cut(s) 598
AcuI CTGAAG 1 cut(s) 859
AfiI CCNNNNNNNGG 2 cut(s) 701, 929
AflIII ACRYGT 1 cut(s) 632
AgsI TTSAA 1 cut(s) 520
AhlI ACTAGT 2 cut(s) 574, 698
AloI GAACNNNNNNTCC 2 cut(s) 106, 138
AluBI AGCT 5 cut(s) 83, 179, 191, 611, 814
AluI AGCT 5 cut(s) 83, 179, 191, 611, 814
Alw21I GWGCWC 1 cut(s) 620
Alw26I GTCTC 3 cut(s) 362, 379, 456
Alw44I GTGCAC 1 cut(s) 616
AlwI GGATC 1 cut(s) 598
Aor13HI TCCGGA 1 cut(s) 627
AoxI GGCC 2 cut(s) 579, 790
ApaLI GTGCAC 1 cut(s) 616
ApeKI GCWGC 2 cut(s) 401, 488
AspLEI GCGC 1 cut(s) 532
AspS9I GGNCC 3 cut(s) 580, 790, 951
AsuHPI GGTGA 3 cut(s) 790, 856, 919
AvaII GGWCC 1 cut(s) 951
BaeGI GKGCMC 1 cut(s) 620
BanI GGYRCC 1 cut(s) 932
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 620
BbvI GCAGC 2 cut(s) 388, 475
BccI CCATC 1 cut(s) 901
BcoDI GTCTC 3 cut(s) 362, 379, 456
BcuI ACTAGT 2 cut(s) 574, 698
BfaI CTAG 4 cut(s) 405, 575, 612, 699
BfmI CTRYAG 1 cut(s) 958
BfuAI ACCTGC 1 cut(s) 281
BglI GCCNNNNNGGC 1 cut(s) 789
BisI GCNGC 2 cut(s) 402, 489
BlsI GCNGC 2 cut(s) 403, 490
Bme18I GGWCC 1 cut(s) 951
BmgT120I GGNCC 3 cut(s) 580, 790, 951
BmiI GGNNCC 2 cut(s) 791, 934
BmsI GCATC 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 197
Bpu10I CCTNAGC 1 cut(s) 917
Bsa29I ATCGAT 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 856
BsaBI GATNNNNATC 1 cut(s) 714
BsaJI CCNNGG 1 cut(s) 567
BsaWI WCCGGW 1 cut(s) 627
BsaXI ACNNNNNCTCC 2 cut(s) 704, 734
Bsc4I CCNNNNNNNGG 2 cut(s) 701, 929
Bse118I RCCGGY 1 cut(s) 929
Bse1I ACTGG 2 cut(s) 22, 732
Bse8I GATNNNNATC 1 cut(s) 714
BseAI TCCGGA 1 cut(s) 627
BseCI ATCGAT 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 567
BseGI GGATG 3 cut(s) 239, 262, 736
BseJI GATNNNNATC 1 cut(s) 714
BseLI CCNNNNNNNGG 2 cut(s) 701, 929
BseMII CTCAG 3 cut(s) 174, 600, 854
BseNI ACTGG 2 cut(s) 22, 732
BseSI GKGCMC 1 cut(s) 620
BseXI GCAGC 2 cut(s) 388, 475
Bsh1236I CGCG 1 cut(s) 634
BshFI GGCC 2 cut(s) 581, 792
BshNI GGYRCC 1 cut(s) 932
BshVI ATCGAT 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 620
BsiSI CCGG 2 cut(s) 628, 930
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 2 cut(s) 701, 929
BsmAI GTCTC 3 cut(s) 362, 379, 456
BsmFI GGGAC 1 cut(s) 422
BsmI GAATGC 1 cut(s) 853
BsnI GGCC 2 cut(s) 581, 792
Bsp1286I GDGCHC 1 cut(s) 620
Bsp13I TCCGGA 1 cut(s) 627
Bsp143I GATC 1 cut(s) 590
BspACI CCGC 3 cut(s) 164, 507, 822
BspANI GGCC 2 cut(s) 581, 792
BspCNI CTCAG 3 cut(s) 173, 599, 853
BspDI ATCGAT 1 cut(s) 330
BspEI TCCGGA 1 cut(s) 627
BspFNI CGCG 1 cut(s) 634
BspLI GGNNCC 2 cut(s) 791, 934
BspMI ACCTGC 1 cut(s) 281
BspPI GGATC 1 cut(s) 598
BspT107I GGYRCC 1 cut(s) 932
BsrBI CCGCTC 1 cut(s) 509
BsrFI RCCGGY 1 cut(s) 929
BsrI ACTGG 2 cut(s) 22, 732
BssAI RCCGGY 1 cut(s) 929
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 1 cut(s) 590
BssT1I CCWWGG 1 cut(s) 567
Bst4CI ACNGT 3 cut(s) 397, 445, 959
Bst6I CTCTTC 1 cut(s) 454
BstBAI YACGTR 1 cut(s) 856
BstC8I GCNNGC 3 cut(s) 181, 478, 609
BstDEI CTNAG 5 cut(s) 160, 482, 586, 840, 917
BstF5I GGATG 3 cut(s) 239, 262, 736
BstFNI CGCG 1 cut(s) 634
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 1 cut(s) 593
BstMAI GTCTC 3 cut(s) 362, 379, 456
BstMBI GATC 1 cut(s) 590
BstMWI GCNNNNNNNGC 2 cut(s) 668, 789
BstSFI CTRYAG 1 cut(s) 958
BstSLI GKGCMC 1 cut(s) 620
BstUI CGCG 1 cut(s) 634
BstV1I GCAGC 2 cut(s) 388, 475
BstV2I GAAGAC 1 cut(s) 197
Bsu15I ATCGAT 1 cut(s) 330
BsuRI GGCC 2 cut(s) 581, 792
BsuTUI ATCGAT 1 cut(s) 330
BtsCI GGATG 3 cut(s) 239, 262, 736
BtsI GCAGTG 2 cut(s) 159, 561
BtsIMutI CAGTG 5 cut(s) 159, 450, 561, 677, 725
BveI ACCTGC 1 cut(s) 281
Cac8I GCNNGC 3 cut(s) 181, 478, 609
CfoI GCGC 1 cut(s) 532
Cfr10I RCCGGY 1 cut(s) 929
Cfr13I GGNCC 3 cut(s) 580, 790, 951
ClaI ATCGAT 1 cut(s) 330
CseI GACGC 2 cut(s) 623, 640
CviAII CATG 3 cut(s) 24, 184, 215
DdeI CTNAG 5 cut(s) 160, 482, 586, 840, 917
DpnI GATC 1 cut(s) 592
DpnII GATC 1 cut(s) 590
Eam1104I CTCTTC 1 cut(s) 454
EarI CTCTTC 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 567
Eco47I GGWCC 1 cut(s) 951
Eco57I CTGAAG 1 cut(s) 859
EcoO109I RGGNCCY 1 cut(s) 790
EcoT14I CCWWGG 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 567
FaeI CATG 3 cut(s) 27, 187, 218
FaqI GGGAC 1 cut(s) 422
FatI CATG 3 cut(s) 23, 183, 214
FauI CCCGC 1 cut(s) 514
FblI GTMKAC 1 cut(s) 830
Fnu4HI GCNGC 2 cut(s) 402, 489
FokI GGATG 3 cut(s) 246, 269, 743
Fsp4HI GCNGC 2 cut(s) 402, 489
FspBI CTAG 4 cut(s) 405, 575, 612, 699
GlaI GCGC 1 cut(s) 531
GluI GCNGC 2 cut(s) 402, 489
HaeIII GGCC 2 cut(s) 581, 792
HapII CCGG 2 cut(s) 628, 930
HgaI GACGC 2 cut(s) 623, 640
HhaI GCGC 1 cut(s) 532
Hin1II CATG 3 cut(s) 27, 187, 218
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HincII GTYRAC 1 cut(s) 970
HindII GTYRAC 1 cut(s) 970
HinfI GANTC 5 cut(s) 158, 355, 410, 464, 836
HpaII CCGG 2 cut(s) 628, 930
HphI GGTGA 3 cut(s) 790, 856, 919
Hpy166II GTNNAC 6 cut(s) 138, 157, 431, 618, 831, 970
Hpy188I TCNGA 3 cut(s) 805, 878, 945
Hpy188III TCNNGA 2 cut(s) 588, 628
Hpy8I GTNNAC 6 cut(s) 138, 157, 431, 618, 831, 970
HpyAV CCTTC 3 cut(s) 77, 166, 883
HpyCH4III ACNGT 3 cut(s) 397, 445, 959
HpyCH4IV ACGT 1 cut(s) 855
HpyCH4V TGCA 5 cut(s) 27, 422, 618, 671, 799
HpyF10VI GCNNNNNNNGC 2 cut(s) 668, 789
HpyF3I CTNAG 5 cut(s) 160, 482, 586, 840, 917
HpySE526I ACGT 1 cut(s) 855
Hsp92II CATG 3 cut(s) 27, 187, 218
HspAI GCGC 1 cut(s) 530
Kpn2I TCCGGA 1 cut(s) 627
Kzo9I GATC 1 cut(s) 590
LmnI GCTCC 2 cut(s) 188, 514
Lsp1109I GCAGC 2 cut(s) 388, 475
LweI GCATC 1 cut(s) 229
MaeI CTAG 4 cut(s) 405, 575, 612, 699
MaeII ACGT 1 cut(s) 855
MaeIII GTNAC 1 cut(s) 733
MalI GATC 1 cut(s) 592
MbiI CCGCTC 1 cut(s) 509
MboI GATC 1 cut(s) 590
MboII GAAGA 2 cut(s) 197, 471
MfeI CAATTG 3 cut(s) 92, 347, 600
MhlI GDGCHC 1 cut(s) 620
MluCI AATT 8 cut(s) 92, 268, 304, 336, 347, 493, 600, 772
MluI ACGCGT 1 cut(s) 632
MlyI GAGTC 5 cut(s) 152, 364, 404, 458, 830
MmeI TCCRAC 4 cut(s) 55, 522, 719, 767
MnlI CCTC 5 cut(s) 109, 306, 593, 698, 933
MroI TCCGGA 1 cut(s) 627
MseI TTAA 3 cut(s) 228, 339, 392
MslI CAYNNNNRTG 1 cut(s) 213
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 2 cut(s) 628, 930
MunI CAATTG 3 cut(s) 92, 347, 600
Mva1269I GAATGC 1 cut(s) 853
MvnI CGCG 1 cut(s) 634
MwoI GCNNNNNNNGC 2 cut(s) 668, 789
NdeII GATC 1 cut(s) 590
NlaIII CATG 3 cut(s) 27, 187, 218
NlaIV GGNNCC 2 cut(s) 791, 934
NmuCI GTSAC 1 cut(s) 733
PaqCI CACCTGC 1 cut(s) 281
PctI GAATGC 1 cut(s) 853
PflMI CCANNNNNTGG 1 cut(s) 701
PkrI GCNGC 2 cut(s) 403, 490
PleI GAGTC 5 cut(s) 152, 363, 404, 458, 830
PpsI GAGTC 5 cut(s) 152, 363, 404, 458, 830
Ppu21I YACGTR 1 cut(s) 856
PspN4I GGNNCC 2 cut(s) 791, 934
PspPI GGNCC 3 cut(s) 580, 790, 951
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 3 cut(s) 228, 339, 392
SatI GCNGC 2 cut(s) 402, 489
Sau3AI GATC 1 cut(s) 590
Sau96I GGNCC 3 cut(s) 580, 790, 951
SchI GAGTC 5 cut(s) 152, 364, 404, 458, 830
SduI GDGCHC 1 cut(s) 620
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 958
SinI GGWCC 1 cut(s) 951
SmiMI CAYNNNNRTG 1 cut(s) 213
SpeI ACTAGT 2 cut(s) 574, 698
Sse9I AATT 8 cut(s) 92, 268, 304, 336, 347, 493, 600, 772
SsiI CCGC 3 cut(s) 164, 507, 822
SspMI CTAG 4 cut(s) 405, 575, 612, 699
StyI CCWWGG 1 cut(s) 567
TaaI ACNGT 3 cut(s) 397, 445, 959
TaiI ACGT 1 cut(s) 858
TaqI TCGA 2 cut(s) 170, 330
TasI AATT 8 cut(s) 92, 268, 304, 336, 347, 493, 600, 772
Tru1I TTAA 3 cut(s) 228, 339, 392
Tru9I TTAA 3 cut(s) 228, 339, 392
TscAI CASTG 5 cut(s) 159, 450, 568, 684, 732
TseFI GTSAC 1 cut(s) 733
TseI GCWGC 2 cut(s) 401, 488
Tsp45I GTSAC 1 cut(s) 733
TspDTI ATGAA 4 cut(s) 12, 197, 654, 660
TspRI CASTG 5 cut(s) 159, 450, 568, 684, 732
Van91I CCANNNNNTGG 1 cut(s) 701
VneI GTGCAC 1 cut(s) 616
VpaK11BI GGWCC 1 cut(s) 951
XcmI CCANNNNNNNNNTGG 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 830
XspI CTAG 4 cut(s) 405, 575, 612, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.