FvH4_3g40600

Belongs to the DEAD box helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011549
Physical Location & Seq
Forward (+)
34221595 .. 34224222
2628 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40600.t1

Sequence Viewer

Length: 348 bp
ATGTCGTATGTGCCTCCACACCTCAGAAACTCCAGCTCAACCACCACCACCTCCGCCGCCGCCAAATACTCATCCGCAACCGACGTTGATCGCAGTAAGCTCTCCTACTCCGCCTCCTCCAACTCTCACTCGTCCGCTGCTCCGTTCTCCTCGTTCTCCCACTCCAATGGCTCTCGCTGGAGCTCTGCTGCTCACTCCTCGGCCAACCGAGCTATCTCGCCGCCTGACGCCGTCGTTCCTCAGTGGAAGCTGTCGGAGCGCGTCCTCCGAATGAAGCCGGAGCTGGTTCGTATCCTTCATCCGACTTCAGTTCTTGTTGCAATTTCGGTTTTGCTCGAATTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05202 ko05205 map03040 map05202 map05205
Pfam Domains
Protein Families
DEAD Helicase_C

Protein Analysis

116

Amino Acids

12.36

Weight (kDa)

9.86

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 261
AciI CCGC 7 cut(s) 54, 57, 60, 75, 111, 135, 221
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 291
AcyI GRCGYC 1 cut(s) 228
AluBI AGCT 6 cut(s) 36, 100, 183, 212, 250, 283
AluI AGCT 6 cut(s) 36, 100, 183, 212, 250, 283
Alw21I GWGCWC 1 cut(s) 185
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 2 cut(s) 137, 188
ApoI RAATTY 1 cut(s) 338
AspLEI GCGC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 124, 175
BceAI ACGGC 1 cut(s) 215
BciVI GTATCC 1 cut(s) 302
BfuI GTATCC 1 cut(s) 302
BisI GCNGC 5 cut(s) 57, 60, 138, 189, 221
BlsI GCNGC 5 cut(s) 58, 61, 139, 190, 222
BpmI CTGGAG 2 cut(s) 16, 199
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 71, 298
BseMII CTCAG 2 cut(s) 37, 254
BseRI GAGGAG 3 cut(s) 106, 139, 187
BseXI GCAGC 2 cut(s) 124, 175
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 278
BsnI GGCC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 7 cut(s) 54, 57, 60, 75, 111, 135, 221
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 2 cut(s) 36, 253
BspFNI CGCG 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 88
BssNI GRCGYC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 228
BstDEI CTNAG 2 cut(s) 23, 240
BstF5I GGATG 2 cut(s) 71, 298
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 209, 256
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 2 cut(s) 124, 175
BstXI CCANNNNNNTGG 1 cut(s) 167
BsuI GTATCC 1 cut(s) 302
BsuRI GGCC 1 cut(s) 203
BtsCI GGATG 2 cut(s) 71, 298
BtsIMutI CAGTG 1 cut(s) 248
CfoI GCGC 1 cut(s) 261
CseI GACGC 2 cut(s) 236, 250
CviJI RGCY 9 cut(s) 36, 100, 171, 183, 203, 212, 250, 277, 283
CviKI_1 RGCY 9 cut(s) 36, 100, 171, 183, 203, 212, 250, 277, 283
DdeI CTNAG 2 cut(s) 23, 240
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 201
EciI GGCGGA 2 cut(s) 43, 100
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 291
EcoICRI GAGCTC 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 185
FaiI YATR 1 cut(s) 9
Fnu4HI GCNGC 5 cut(s) 57, 60, 138, 189, 221
FokI GGATG 2 cut(s) 58, 285
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 5 cut(s) 57, 60, 138, 189, 221
GlaI GCGC 1 cut(s) 260
GluI GCNGC 5 cut(s) 57, 60, 138, 189, 221
GsuI CTGGAG 2 cut(s) 16, 199
HaeIII GGCC 1 cut(s) 203
HapII CCGG 1 cut(s) 278
HgaI GACGC 2 cut(s) 236, 250
HhaI GCGC 1 cut(s) 261
Hin1I GRCGYC 1 cut(s) 228
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HpaII CCGG 1 cut(s) 278
Hpy188I TCNGA 4 cut(s) 26, 256, 269, 303
Hpy99I CGWCG 2 cut(s) 86, 236
HpyAV CCTTC 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 256
HpyF3I CTNAG 2 cut(s) 23, 240
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 228
HspAI GCGC 1 cut(s) 259
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 4 cut(s) 145, 180, 256, 280
LpnPI CCDG 5 cut(s) 46, 163, 237, 269, 291
Lsp1109I GCAGC 2 cut(s) 124, 175
MaeII ACGT 1 cut(s) 84
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 2 cut(s) 321, 338
MmeI TCCRAC 3 cut(s) 144, 234, 326
MnlI CCTC 9 cut(s) 24, 32, 61, 124, 127, 160, 208, 249, 275
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 1 cut(s) 278
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 2 cut(s) 209, 256
NdeII GATC 1 cut(s) 88
NmeAIII GCCGAG 1 cut(s) 179
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 5 cut(s) 58, 61, 139, 190, 222
Psp124BI GAGCTC 1 cut(s) 185
PsyI GACNNNGTC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 165
SacI GAGCTC 1 cut(s) 185
SatI GCNGC 5 cut(s) 57, 60, 138, 189, 221
Sau3AI GATC 1 cut(s) 88
SduI GDGCHC 1 cut(s) 185
SetI ASST 9 cut(s) 24, 38, 53, 87, 102, 185, 214, 252, 285
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 2 cut(s) 321, 338
SsiI CCGC 7 cut(s) 54, 57, 60, 75, 111, 135, 221
SstI GAGCTC 1 cut(s) 185
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 336
TasI AATT 2 cut(s) 321, 338
TauI GCSGC 3 cut(s) 59, 62, 223
TscAI CASTG 1 cut(s) 248
TseI GCWGC 2 cut(s) 137, 188
TspDTI ATGAA 2 cut(s) 287, 287
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 248
Tth111I GACNNNGTC 1 cut(s) 230
XapI RAATTY 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.