Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011549

Physical Location & Seq

Genomic Coordinates Reverse (-)

10007559 .. 10013771

Gene Structure 6213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00007870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1746 bp

ATGTCGTATGTGCCTCCTCACCTGAGAAACTCAGCCTCAACCACCACCACTACCACTACCACTGCCACCGCCAGAACCTCCTCCGGAACCGACGCTGATCGGAGCAAGCTCTCTTACTCCTCCTCCAATTCTCACTCCAACAACAACGAAAAGTCGTCCGCTGCTTCATTCTCCTCGTTCTCGCACTCCAATGGCTCCCGGTGGAGTTCCGCCGCTCACTCGCCGGCCAACCGAGCTATCTCCCCGCCCGACGCCGTCGTCCCTCAGTGGAAGCCGTCGGAACGGGTCCTCCGAATGAAGCCGGAACTGATTGAGGAGGTGTGTTTGCGGCTTAATTTGGATGTTTCTGTTAGTCTGGACTCTGCTCCTCCCCCGGCACCAATTGAGTCTTTTACAGATATGTGTTTGCACCCTAGCATTATGAAGGATATAGCATTTCATGGATACACTATGCCAACACCAATTCAAGCTCAAGCCATGCCAGTTGCCCTCAGTGGAAGGGATTTATTAGGTTGCGCTGAAACTGGTAGTGGTAAAACTGCTGCATTTGCCATTCCTATGATACAGCATTGTTTGGCTCAACCTCCCGTTCAGCGTGGTGATGGACCACTAGCATTGGTACTGGCCCCAACTAGAGAGCTTGCACAACAAATAGAGGAAGAGGTCAAGGCTTTTAGTAAATCTCTTGAGTCCTTCAAAACTGCAATAGTTGTGGGTGGAACCAACATAGCTGAGCAGAGATCTGAGCTTCGAGCAGGAGTTAATATTGTGGTTGCTACTCCTGGAAGATTCATAGATCATTTACAGCAAGGGAACACTTCTGTGTCTAGAATTTCGTTTGTTGTTCTAGATGAAGCTGATAGAATGCTTGACATGGGTTTTGAACCACAGATAAGAGAGGTGATGCGGAACCTTTCTGAAAAGCATCAAACTTTGCTGTTTAGTGCAACTATGCCTGAAGAGATTGAAGGACTTCTCCGGCCTTCTTTCCTCCAACTGCAGGAATATTTGACTAATCCAGTGCAAGTGAAGGTGGGAAAAGTGAGTAGCCCTACTGCAAATGTAACTCAGAGTTTGGAGAAGGTTCCTGACAGTGAGAAGACTGATCGGCTTCTGGGTTTGCTCGTAGAGGAGTCATCTCGAGCTGAAAGAGCTGGACATCCATTTCCCTTAACTATTGTATTTGTTGAAAGGAAGACACGCTGTGATGATGTAGCTGAAGCTTTGGTAGCACAAGGTTTGCATGCAGTTGCTCTTCATGGTGGACGTACGCAAACTGAAAGAGAGGCTGCTCTGCGTGAATTTAGAAAAGGCACTACCAACATCTTGGTTGCCACCGATGTTGCATCTCGTGGTTTGGACGTCTCAGGAGTTGCTCACGTTATCAATTTGGATCTTCCGAAGAGCATGGAAGATTATGTACACCGGATTGGAAGGACTGGAAGAGCGGGATCAATGGGACAAGCTACTTCCTTCTACACTGATCGTGATATGTTCCTTGTGGCGAATATAAAGAAAGCAATAGCTGATGTGGGATCTGGGAATGCTCTAGCTTTTGCTACGGGGAAGACTGCAAGAAGGAAAGAAAGAGAAGCAGCTGCTGCTCACAAGCAAGCTAGGGTTTCTCTATCCAAGTCTTCAAGTATGGGGCCCACATCAATAAACATTGAGGACAAGTATAAGTTCATGGTTTCTGAACCGGACAATCAAACAGAGGGTGCAGCAGATAGTGCTTGGGACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

581

Amino Acids

62.81

Weight (kDa)

6.34

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	153 - 323	3.7e-53	DEAD/DEAH box helicase
ResIII	PF04851	173 - 319	6e-09	Type III restriction enzyme, res subunit
Helicase_C	PF00271	390 - 484	7.9e-30	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011549)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40600 FvH4_3g40620
malus_domestica	MD03G1050800.v1.1 MD11G1052800.v1.1
prunus_persica	Prupe.6G040300_v2.0.a1 Prupe.6G040300_v2.0.a1
pyrus_communis	pycom03g04010 pycom11g04300
rosa_chinensis	RchiOBHm_Chr5g0073371
rosa_laevigata	RLG00000036381
rosa_multiflora	Rmu_sc0024948.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007870
rosa_rugosa	Rorug05G0423000 Rorug05G0423100 Rorug05G0423200
rosa_samantha	Rh5AG479600 Rh5BG500800 Rh5CG523900 Rh5DG512700
rosa_wichuraiana	Rw5G044590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
AatII	GACGTC	1 cut(s)	1365
AccB1I	GGYRCC	1 cut(s)	376
AccBSI	CCGCTC	2 cut(s)	215, 1448
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	8 cut(s)	69, 159, 210, 213, 245, 328, 907, 1448
AclWI	GGATC	3 cut(s)	1401, 1459, 1543
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	831, 1301
AcuI	CTGAAG	2 cut(s)	978, 1239
AcyI	GRCGYC	2 cut(s)	252, 1362
AdeI	CACNNNGTG	1 cut(s)	1205
AfaI	GTAC	3 cut(s)	621, 1270, 1422
AfiI	CCNNNNNNNGG	1 cut(s)	1000
AgsI	TTSAA	6 cut(s)	467, 697, 884, 968, 1190, 1641
AjnI	CCWGG	1 cut(s)	781
AleI	CACNNNNGTG	1 cut(s)	821
AloI	GAACNNNNNNTCC	2 cut(s)	273, 305
Alw26I	GTCTC	1 cut(s)	1369
AlwI	GGATC	3 cut(s)	1401, 1459, 1543
AlwNI	CAGNNNCTG	1 cut(s)	1601
Ama87I	CYCGRG	1 cut(s)	1140
Aor13HI	TCCGGA	1 cut(s)	83
AoxI	GGCC	4 cut(s)	225, 624, 980, 1649
ApaI	GGGCCC	1 cut(s)	1653
ApeKI	GCWGC	7 cut(s)	161, 542, 1289, 1595, 1598, 1601, 1721
ApoI	RAATTY	2 cut(s)	831, 1301
ArsI	GACNNNNNNTTYG	2 cut(s)	863, 895
Asp700I	GAANNNNTTC	1 cut(s)	972
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	5 cut(s)	286, 605, 625, 1649, 1650
AsuC2I	CCSGG	2 cut(s)	199, 374
AsuHPI	GGTGA	3 cut(s)	11, 611, 913
AvaI	CYCGRG	1 cut(s)	1140
AvaII	GGWCC	2 cut(s)	286, 605
BaeGI	GKGCMC	1 cut(s)	1653
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	1653
BarI	GAAGNNNNNNTAC	2 cut(s)	1404, 1436
BauI	CACGAG	1 cut(s)	1350
BbsI	GAAGAC	4 cut(s)	1106, 1202, 1574, 1629
BbvI	GCAGC	7 cut(s)	148, 529, 1276, 1585, 1588, 1607, 1733
BccI	CCATC	1 cut(s)	596
BceAI	ACGGC	2 cut(s)	239, 259
BciT130I	CCWGG	1 cut(s)	783
BciVI	GTATCC	1 cut(s)	437
BcnI	CCSGG	2 cut(s)	199, 374
BcoDI	GTCTC	1 cut(s)	1369
BfaI	CTAG	7 cut(s)	414, 611, 633, 828, 848, 1550, 1617
BfmI	CTRYAG	1 cut(s)	998
BfuI	GTATCC	1 cut(s)	437
BglII	AGATCT	1 cut(s)	740
BisI	GCNGC	9 cut(s)	162, 213, 329, 543, 1290, 1596, 1599, 1602, 1722
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	9 cut(s)	163, 214, 330, 544, 1291, 1597, 1600, 1603, 1723
Bme1390I	CCNGG	3 cut(s)	199, 374, 783
Bme18I	GGWCC	2 cut(s)	286, 605
BmeT110I	CYCGRG	1 cut(s)	1140
BmgT120I	GGNCC	5 cut(s)	286, 605, 625, 1649, 1650
BmrFI	CCNGG	3 cut(s)	199, 374, 783
BmsI	GCATC	3 cut(s)	894, 934, 1355
BpiI	GAAGAC	4 cut(s)	1106, 1202, 1574, 1629
Bpu1102I	GCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	2 cut(s)	456, 707
BpuMI	CCSGG	2 cut(s)	199, 374
BsaHI	GRCGYC	2 cut(s)	252, 1362
BsaJI	CCNNGG	1 cut(s)	372
BsaWI	WCCGGW	3 cut(s)	83, 1425, 1699
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 273, 303
Bsc4I	CCNNNNNNNGG	1 cut(s)	1000
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	5 cut(s)	482, 529, 627, 1019, 1444
BseAI	TCCGGA	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	783
BseDI	CCNNGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	346, 1159
BseLI	CCNNNNNNNGG	1 cut(s)	1000
BseMII	CTCAG	8 cut(s)	14, 45, 278, 505, 723, 735, 1082, 1380
BseNI	ACTGG	5 cut(s)	482, 529, 627, 1019, 1444
BseRI	GAGGAG	8 cut(s)	6, 70, 109, 112, 163, 329, 357, 1145
BseSI	GKGCMC	1 cut(s)	1653
BseXI	GCAGC	7 cut(s)	148, 529, 1276, 1585, 1588, 1607, 1733
BsgI	GTGCAG	1 cut(s)	1740
BshFI	GGCC	4 cut(s)	227, 626, 982, 1651
BshNI	GGYRCC	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	1140
BsiSI	CCGG	8 cut(s)	84, 199, 224, 302, 374, 979, 1426, 1700
BsiWI	CGTACG	1 cut(s)	1268
BslFI	GGGAC	2 cut(s)	245, 1473
BslI	CCNNNNNNNGG	1 cut(s)	1000
BsmAI	GTCTC	1 cut(s)	1369
BsmBI	CGTCTC	1 cut(s)	1369
BsmFI	GGGAC	2 cut(s)	245, 1473
BsmI	GAATGC	2 cut(s)	870, 1549
BsnI	GGCC	4 cut(s)	227, 626, 982, 1651
BsoBI	CYCGRG	1 cut(s)	1140
Bsp120I	GGGCCC	1 cut(s)	1649
Bsp1286I	GDGCHC	1 cut(s)	1653
Bsp13I	TCCGGA	1 cut(s)	83
Bsp1407I	TGTACA	1 cut(s)	1420
Bsp143I	GATC	8 cut(s)	97, 740, 796, 1105, 1393, 1451, 1483, 1535
Bsp1720I	GCTNAGC	1 cut(s)	732
BspACI	CCGC	8 cut(s)	69, 159, 210, 213, 245, 328, 907, 1448
BspANI	GGCC	4 cut(s)	227, 626, 982, 1651
BspCNI	CTCAG	8 cut(s)	15, 44, 277, 504, 724, 736, 1081, 1379
BspEI	TCCGGA	1 cut(s)	83
BspMAI	CTGCAG	1 cut(s)	1002
BspPI	GGATC	3 cut(s)	1401, 1459, 1543
BspQI	GCTCTTC	3 cut(s)	1260, 1397, 1438
BspT107I	GGYRCC	1 cut(s)	376
BsrBI	CCGCTC	2 cut(s)	215, 1448
BsrFI	RCCGGY	1 cut(s)	223
BsrGI	TGTACA	1 cut(s)	1420
BsrI	ACTGG	5 cut(s)	482, 529, 627, 1019, 1444
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	8 cut(s)	97, 740, 796, 1105, 1393, 1451, 1483, 1535
BssNI	GRCGYC	2 cut(s)	252, 1362
BssSI	CACGAG	1 cut(s)	1350
Bst2BI	CACGAG	1 cut(s)	1350
Bst2UI	CCWGG	1 cut(s)	783
Bst4CI	ACNGT	1 cut(s)	1094
Bst6I	CTCTTC	5 cut(s)	654, 954, 1260, 1397, 1438
BstACI	GRCGYC	2 cut(s)	252, 1362
BstAPI	GCANNNNNTGC	2 cut(s)	1601, 1730
BstAUI	TGTACA	1 cut(s)	1420
BstC8I	GCNNGC	5 cut(s)	107, 225, 642, 1245, 1614
BstDEI	CTNAG	8 cut(s)	23, 31, 264, 491, 732, 744, 1068, 1366
BstF5I	GGATG	2 cut(s)	346, 1159
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	8 cut(s)	100, 743, 799, 1108, 1396, 1454, 1486, 1538
BstMAI	GTCTC	1 cut(s)	1369
BstMBI	GATC	8 cut(s)	97, 740, 796, 1105, 1393, 1451, 1483, 1535
BstMWI	GCNNNNNNNGC	6 cut(s)	233, 548, 1151, 1229, 1601, 1730
BstNI	CCWGG	1 cut(s)	783
BstNSI	RCATGY	1 cut(s)	1247
BstSCI	CCNGG	3 cut(s)	197, 372, 781
BstSFI	CTRYAG	1 cut(s)	998
BstSLI	GKGCMC	1 cut(s)	1653
BstV1I	GCAGC	7 cut(s)	148, 529, 1276, 1585, 1588, 1607, 1733
BstV2I	GAAGAC	4 cut(s)	1106, 1202, 1574, 1629
BstX2I	RGATCY	3 cut(s)	740, 1393, 1535
BstXI	CCANNNNNNTGG	1 cut(s)	1327
BstYI	RGATCY	3 cut(s)	740, 1393, 1535
BsuI	GTATCC	1 cut(s)	437
BsuRI	GGCC	4 cut(s)	227, 626, 982, 1651
BtsCI	GGATG	2 cut(s)	346, 1159
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	6 cut(s)	60, 272, 499, 1026, 1099, 1479
Cac8I	GCNNGC	5 cut(s)	107, 225, 642, 1245, 1614
CaiI	CAGNNNCTG	1 cut(s)	1601
CfoI	GCGC	1 cut(s)	518
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	5 cut(s)	286, 605, 625, 1649, 1650
CseI	GACGC	2 cut(s)	101, 260
Csp6I	GTAC	3 cut(s)	620, 1269, 1421
CspCI	CAANNNNNGTGG	6 cut(s)	597, 632, 693, 728, 1324, 1359
CviAII	CATG	7 cut(s)	440, 478, 874, 1244, 1259, 1408, 1687
CviQI	GTAC	3 cut(s)	620, 1269, 1421
DdeI	CTNAG	8 cut(s)	23, 31, 264, 491, 732, 744, 1068, 1366
DpnI	GATC	8 cut(s)	99, 742, 798, 1107, 1395, 1453, 1485, 1537
DpnII	GATC	8 cut(s)	97, 740, 796, 1105, 1393, 1451, 1483, 1535
DraIII	CACNNNGTG	1 cut(s)	1205
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	5 cut(s)	654, 954, 1260, 1397, 1438
EarI	CTCTTC	5 cut(s)	654, 954, 1260, 1397, 1438
EciI	GGCGGA	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	1653
Eco47I	GGWCC	2 cut(s)	286, 605
Eco57I	CTGAAG	2 cut(s)	978, 1239
Eco88I	CYCGRG	1 cut(s)	1140
EcoO109I	RGGNCCY	2 cut(s)	286, 1649
EcoRII	CCWGG	1 cut(s)	781
EcoT38I	GRGCYC	1 cut(s)	1653
Esp3I	CGTCTC	1 cut(s)	1369
FaeI	CATG	7 cut(s)	443, 481, 877, 1247, 1262, 1411, 1690
FaqI	GGGAC	2 cut(s)	245, 1473
FatI	CATG	7 cut(s)	439, 477, 873, 1243, 1258, 1407, 1686
FauI	CCCGC	2 cut(s)	252, 1441
Fnu4HI	GCNGC	9 cut(s)	162, 213, 329, 543, 1290, 1596, 1599, 1602, 1722
FokI	GGATG	2 cut(s)	353, 1146
FriOI	GRGCYC	1 cut(s)	1653
Fsp4HI	GCNGC	9 cut(s)	162, 213, 329, 543, 1290, 1596, 1599, 1602, 1722
FspBI	CTAG	7 cut(s)	414, 611, 633, 828, 848, 1550, 1617
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	9 cut(s)	162, 213, 329, 543, 1290, 1596, 1599, 1602, 1722
HaeIII	GGCC	4 cut(s)	227, 626, 982, 1651
HapII	CCGG	8 cut(s)	84, 199, 224, 302, 374, 979, 1426, 1700
HgaI	GACGC	2 cut(s)	101, 260
HhaI	GCGC	1 cut(s)	518
Hin1I	GRCGYC	2 cut(s)	252, 1362
Hin1II	CATG	7 cut(s)	443, 481, 877, 1247, 1262, 1411, 1690
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HindIII	AAGCTT	1 cut(s)	1221
HinfI	GANTC	5 cut(s)	359, 386, 689, 789, 1133
HpaII	CCGG	8 cut(s)	84, 199, 224, 302, 374, 979, 1426, 1700
HphI	GGTGA	3 cut(s)	11, 611, 913
Hpy166II	GTNNAC	2 cut(s)	1265, 1423
Hpy188I	TCNGA	8 cut(s)	102, 280, 293, 745, 919, 1071, 1401, 1696
Hpy188III	TCNNGA	9 cut(s)	84, 356, 686, 828, 848, 1088, 1140, 1368, 1487
Hpy8I	GTNNAC	2 cut(s)	1265, 1423
Hpy99I	CGWCG	4 cut(s)	95, 254, 260, 280
HpyCH4III	ACNGT	1 cut(s)	1094
HpyCH4IV	ACGT	3 cut(s)	1267, 1362, 1380
HpyF10VI	GCNNNNNNNGC	6 cut(s)	233, 548, 1151, 1229, 1601, 1730
HpyF3I	CTNAG	8 cut(s)	23, 31, 264, 491, 732, 744, 1068, 1366
HpySE526I	ACGT	3 cut(s)	1267, 1362, 1380
Hsp92I	GRCGYC	2 cut(s)	252, 1362
Hsp92II	CATG	7 cut(s)	443, 481, 877, 1247, 1262, 1411, 1690
HspAI	GCGC	1 cut(s)	516
Kpn2I	TCCGGA	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	223
KroNI	GCCGGC	1 cut(s)	225
Kzo9I	GATC	8 cut(s)	97, 740, 796, 1105, 1393, 1451, 1483, 1535
LguI	GCTCTTC	3 cut(s)	1260, 1397, 1438
LmnI	GCTCC	3 cut(s)	102, 200, 370
Lsp1109I	GCAGC	7 cut(s)	148, 529, 1276, 1585, 1588, 1607, 1733
LweI	GCATC	3 cut(s)	894, 934, 1355
MaeI	CTAG	7 cut(s)	414, 611, 633, 828, 848, 1550, 1617
MaeII	ACGT	3 cut(s)	1267, 1362, 1380
MaeIII	GTNAC	1 cut(s)	1063
MalI	GATC	8 cut(s)	99, 742, 798, 1107, 1395, 1453, 1485, 1537
MbiI	CCGCTC	2 cut(s)	215, 1448
MboI	GATC	8 cut(s)	97, 740, 796, 1105, 1393, 1451, 1483, 1535
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	3 cut(s)	740, 1393, 1535
MhlI	GDGCHC	1 cut(s)	1653
MluCI	AATT	7 cut(s)	127, 334, 381, 462, 831, 1301, 1387
MlyI	GAGTC	4 cut(s)	353, 395, 698, 1142
MmeI	TCCRAC	3 cut(s)	162, 258, 1018
MroI	TCCGGA	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	972
MseI	TTAA	3 cut(s)	333, 762, 1172
MslI	CAYNNNNRTG	3 cut(s)	189, 557, 821
MspA1I	CMGCKG	2 cut(s)	161, 1598
MspI	CCGG	8 cut(s)	84, 199, 224, 302, 374, 979, 1426, 1700
MspR9I	CCNGG	3 cut(s)	199, 374, 783
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	2 cut(s)	870, 1549
MvaI	CCWGG	1 cut(s)	783
MwoI	GCNNNNNNNGC	6 cut(s)	233, 548, 1151, 1229, 1601, 1730
NaeI	GCCGGC	1 cut(s)	225
NciI	CCSGG	2 cut(s)	199, 374
NdeII	GATC	8 cut(s)	97, 740, 796, 1105, 1393, 1451, 1483, 1535
NgoMIV	GCCGGC	1 cut(s)	223
NlaIII	CATG	7 cut(s)	443, 481, 877, 1247, 1262, 1411, 1690
NspI	RCATGY	1 cut(s)	1247
OliI	CACNNNNGTG	1 cut(s)	821
PaeI	GCATGC	1 cut(s)	1247
PaeR7I	CTCGAG	1 cut(s)	1140
PciSI	GCTCTTC	3 cut(s)	1260, 1397, 1438
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PctI	GAATGC	2 cut(s)	870, 1549
PdiI	GCCGGC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	972
PfeI	GAWTC	1 cut(s)	789
Pfl23II	CGTACG	1 cut(s)	1268
PflFI	GACNNNGTC	1 cut(s)	254
PfoI	TCCNGGA	1 cut(s)	781
PkrI	GCNGC	9 cut(s)	163, 214, 330, 544, 1291, 1597, 1600, 1603, 1723
PleI	GAGTC	4 cut(s)	353, 394, 697, 1141
PpsI	GAGTC	4 cut(s)	353, 394, 697, 1141
PpuMI	RGGWCCY	1 cut(s)	286
Psp5II	RGGWCCY	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	781
PspLI	CGTACG	1 cut(s)	1268
PspOMI	GGGCCC	1 cut(s)	1649
PspPI	GGNCC	5 cut(s)	286, 605, 625, 1649, 1650
PspPPI	RGGWCCY	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	1002
PstNI	CAGNNNCTG	1 cut(s)	1601
PsuI	RGATCY	3 cut(s)	740, 1393, 1535
PsyI	GACNNNGTC	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	1598
RsaI	GTAC	3 cut(s)	621, 1270, 1422
RsaNI	GTAC	3 cut(s)	620, 1269, 1421
RseI	CAYNNNNRTG	3 cut(s)	189, 557, 821
SapI	GCTCTTC	3 cut(s)	1260, 1397, 1438
SaqAI	TTAA	3 cut(s)	333, 762, 1172
SatI	GCNGC	9 cut(s)	162, 213, 329, 543, 1290, 1596, 1599, 1602, 1722
Sau3AI	GATC	8 cut(s)	97, 740, 796, 1105, 1393, 1451, 1483, 1535
Sau96I	GGNCC	5 cut(s)	286, 605, 625, 1649, 1650
SchI	GAGTC	4 cut(s)	353, 395, 698, 1142
ScrFI	CCNGG	3 cut(s)	199, 374, 783
SduI	GDGCHC	1 cut(s)	1653
SfaNI	GCATC	3 cut(s)	894, 934, 1355
SfcI	CTRYAG	1 cut(s)	998
Sfr274I	CTCGAG	1 cut(s)	1140
SinI	GGWCC	2 cut(s)	286, 605
SlaI	CTCGAG	1 cut(s)	1140
SmiMI	CAYNNNNRTG	3 cut(s)	189, 557, 821
SmlI	CTYRAG	3 cut(s)	471, 686, 1140
SmoI	CTYRAG	3 cut(s)	471, 686, 1140
SphI	GCATGC	1 cut(s)	1247
Sse9I	AATT	7 cut(s)	127, 334, 381, 462, 831, 1301, 1387
SsiI	CCGC	8 cut(s)	69, 159, 210, 213, 245, 328, 907, 1448
SspI	AATATT	2 cut(s)	766, 1007
SspMI	CTAG	7 cut(s)	414, 611, 633, 828, 848, 1550, 1617
StyD4I	CCNGG	3 cut(s)	197, 372, 781
TaaI	ACNGT	1 cut(s)	1094
TaiI	ACGT	3 cut(s)	1270, 1365, 1383
TaqI	TCGA	2 cut(s)	751, 1141
TasI	AATT	7 cut(s)	127, 334, 381, 462, 831, 1301, 1387
TatI	WGTACW	1 cut(s)	1420
TauI	GCSGC	2 cut(s)	215, 331
TfiI	GAWTC	1 cut(s)	789
Tru1I	TTAA	3 cut(s)	333, 762, 1172
Tru9I	TTAA	3 cut(s)	333, 762, 1172
TscAI	CASTG	6 cut(s)	67, 272, 499, 1026, 1099, 1486
TseI	GCWGC	7 cut(s)	161, 542, 1289, 1595, 1598, 1601, 1721
TspDTI	ATGAA	8 cut(s)	156, 311, 428, 437, 781, 867, 1247, 1675
TspRI	CASTG	6 cut(s)	67, 272, 499, 1026, 1099, 1486
Tth111I	GACNNNGTC	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	286, 605
XapI	RAATTY	2 cut(s)	831, 1301
XbaI	TCTAGA	2 cut(s)	827, 847
XceI	RCATGY	1 cut(s)	1247
XhoI	CTCGAG	1 cut(s)	1140
XmnI	GAANNNNTTC	1 cut(s)	972
XspI	CTAG	7 cut(s)	414, 611, 633, 828, 848, 1550, 1617
ZraI	GACGTC	1 cut(s)	1363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.