Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011549

Physical Location & Seq

Genomic Coordinates Forward (+)

79832820 .. 79837102

Gene Structure 4283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036381

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTCGTATGTGCCTCCACACCTGAGAAACTCAACCTCAACCACCACCACCACCACCACTACCACCGCCACCGCCAGAACCTCCTCCGGAACCGACGCTGATCGGAGCAAGCTCTCTTACTCCTCCTCCAACTCTCACTCCAACAACAACGACAAGTCGTCCGCTGCTTTATTCTCCTCGTTCTCGCACTCCAATGGCTCCCGGTGGAGTTCTGCCGCTCACTCGCCGGGCAACCGAGCTATCTCCCCGCCCGACGCCGTCGTCCCTCAGTGGAAGCCGTCGGAACGGGTCCTCCGAATGAAGCCGGAACTGATTGAGGAGGTGTGTTTGCGGCTTAATTTAGATGTTTCTGTTAGTCCGGACTCTGCTCCTTCCCCGGCACCAATTGAGTCTTTTACAGATATGTGTTTGCACCCTAGCATTATGAAGGATATAGCATTTCATGGATACACTATGCCAACACCAATTCAGGCTCAAGCCATGCCAGTTGCCCTCAGTGGAAGGGATTTATTAGGTTGTGCTGAAACTGGTAGTGGTAAAACTGCTGCATTTGCCATTCCTATGATACAGCATTGTTTGGCTCAACCTCCCATTCAGCGGGGTGATGGACCACTAGCATTGGTACTGGCCCCAACTAGAGAGCTTGCACAACAAATAGAGGAAGAGGTCAAGGCTTTTAGTAAATCTCTTGAGTCCTTCAAAACTGCAATAGTTGTGGGTGGAACCAACATAGCTGAGCAGAGATCTGAGCTTCGAGCAGGAGTTAATATTGTGGTTGCTACTCCTGGAAGATTCATAGATCATTTACAGCAAGGGAACACTTCTGTGTCTAGAATTTCGTTTGTTGTTCTAGATGAAGCTGATAGAATGCTTGACATGGGTTTTGAACCACAGATAAGAGAGGTGATGCGGAACCTTTCTGAAAAGCATCAAACTTTGCTGTTTAGTGCAACTATGCCTGAAGAGATTGAAGGGTTAGCCCAGGAATATTTGACTAATCCAGTGCAAGTGAAGGTGGGAAAAGTGAGTAGCCCTACAGCAAATTTGGAAAGATTTATTTATTATTATTTTTTTCCCTTTGGGTATTCGTGTGCTTGGTACTCATATCTTGGACAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

374

Amino Acids

40.68

Weight (kDa)

6.01

Isoelectric Point (pI)

54.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	154 - 324	1.4e-53	DEAD/DEAH box helicase
ResIII	PF04851	174 - 320	1.8e-09	Type III restriction enzyme, res subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011549)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40600 FvH4_3g40620
malus_domestica	MD03G1050800.v1.1 MD11G1052800.v1.1
prunus_persica	Prupe.6G040300_v2.0.a1 Prupe.6G040300_v2.0.a1
pyrus_communis	pycom03g04010 pycom11g04300
rosa_chinensis	RchiOBHm_Chr5g0073371
rosa_laevigata	RLG00000036381
rosa_multiflora	Rmu_sc0024948.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007870
rosa_rugosa	Rorug05G0423000 Rorug05G0423100 Rorug05G0423200
rosa_samantha	Rh5AG479600 Rh5BG500800 Rh5CG523900 Rh5DG512700
rosa_wichuraiana	Rw5G044590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	379
AccBSI	CCGCTC	1 cut(s)	218
AccIII	TCCGGA	2 cut(s)	86, 358
AciI	CCGC	8 cut(s)	66, 72, 162, 216, 248, 331, 598, 910
AcsI	RAATTY	2 cut(s)	834, 1042
AcuI	CTGAAG	1 cut(s)	981
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	2 cut(s)	624, 1100
AfiI	CCNNNNNNNGG	1 cut(s)	597
AgsI	TTSAA	3 cut(s)	700, 887, 971
AhdI	GACNNNNNGTC	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	784, 981
AleI	CACNNNNGTG	1 cut(s)	824
AloI	GAACNNNNNNTCC	2 cut(s)	276, 308
AluBI	AGCT	6 cut(s)	112, 239, 643, 734, 751, 860
AluI	AGCT	6 cut(s)	112, 239, 643, 734, 751, 860
Aor13HI	TCCGGA	2 cut(s)	86, 358
AoxI	GGCC	1 cut(s)	627
ApeKI	GCWGC	2 cut(s)	164, 545
ApoI	RAATTY	2 cut(s)	834, 1042
ArsI	GACNNNNNNTTYG	2 cut(s)	866, 898
AspS9I	GGNCC	3 cut(s)	289, 608, 628
AsuC2I	CCSGG	3 cut(s)	202, 228, 377
AsuHPI	GGTGA	2 cut(s)	614, 916
AvaII	GGWCC	2 cut(s)	289, 608
BanI	GGYRCC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	151, 532
BccI	CCATC	1 cut(s)	599
BceAI	ACGGC	2 cut(s)	242, 262
BciT130I	CCWGG	2 cut(s)	786, 983
BciVI	GTATCC	1 cut(s)	440
BcnI	CCSGG	3 cut(s)	202, 228, 377
BfaI	CTAG	5 cut(s)	417, 614, 636, 831, 851
BfmI	CTRYAG	1 cut(s)	1035
BfuI	GTATCC	1 cut(s)	440
BglII	AGATCT	1 cut(s)	743
BisI	GCNGC	4 cut(s)	165, 216, 332, 546
BlpI	GCTNAGC	1 cut(s)	735
BlsI	GCNGC	4 cut(s)	166, 217, 333, 547
Bme1390I	CCNGG	5 cut(s)	202, 228, 377, 786, 983
Bme18I	GGWCC	2 cut(s)	289, 608
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmgT120I	GGNCC	3 cut(s)	289, 608, 628
BmiI	GGNNCC	7 cut(s)	91, 199, 290, 381, 630, 724, 914
BmrFI	CCNGG	5 cut(s)	202, 228, 377, 786, 983
BmsI	GCATC	2 cut(s)	897, 937
Bpu1102I	GCTNAGC	1 cut(s)	735
BpuEI	CTTGAG	2 cut(s)	459, 710
BpuMI	CCSGG	3 cut(s)	202, 228, 377
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	375, 981
BsaWI	WCCGGW	2 cut(s)	86, 358
BsaXI	ACNNNNNCTCC	6 cut(s)	110, 122, 140, 152, 276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	597
Bse1I	ACTGG	4 cut(s)	485, 532, 630, 1001
BseAI	TCCGGA	2 cut(s)	86, 358
BseBI	CCWGG	2 cut(s)	786, 983
BseDI	CCNNGG	2 cut(s)	375, 981
BseLI	CCNNNNNNNGG	1 cut(s)	597
BseMII	CTCAG	5 cut(s)	14, 281, 508, 726, 738
BseNI	ACTGG	4 cut(s)	485, 532, 630, 1001
BseRI	GAGGAG	5 cut(s)	73, 112, 115, 166, 332
BseXI	GCAGC	2 cut(s)	151, 532
BshFI	GGCC	1 cut(s)	629
BshNI	GGYRCC	1 cut(s)	379
BsiSI	CCGG	6 cut(s)	87, 202, 227, 305, 359, 377
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	597
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	873
BsnI	GGCC	1 cut(s)	629
Bsp13I	TCCGGA	2 cut(s)	86, 358
Bsp143I	GATC	3 cut(s)	100, 743, 799
Bsp1720I	GCTNAGC	1 cut(s)	735
BspACI	CCGC	8 cut(s)	66, 72, 162, 216, 248, 331, 598, 910
BspANI	GGCC	1 cut(s)	629
BspCNI	CTCAG	5 cut(s)	15, 280, 507, 727, 739
BspEI	TCCGGA	2 cut(s)	86, 358
BspLI	GGNNCC	7 cut(s)	91, 199, 290, 381, 630, 724, 914
BspT107I	GGYRCC	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	218
BsrI	ACTGG	4 cut(s)	485, 532, 630, 1001
BssECI	CCNNGG	2 cut(s)	375, 981
BssMI	GATC	3 cut(s)	100, 743, 799
BssNI	GRCGYC	1 cut(s)	255
Bst2UI	CCWGG	2 cut(s)	786, 983
Bst6I	CTCTTC	2 cut(s)	657, 957
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	110, 645
BstDEI	CTNAG	5 cut(s)	23, 267, 494, 735, 747
BstKTI	GATC	3 cut(s)	103, 746, 802
BstMBI	GATC	3 cut(s)	100, 743, 799
BstMWI	GCNNNNNNNGC	1 cut(s)	551
BstNI	CCWGG	2 cut(s)	786, 983
BstSCI	CCNGG	5 cut(s)	200, 226, 375, 784, 981
BstSFI	CTRYAG	1 cut(s)	1035
BstV1I	GCAGC	2 cut(s)	151, 532
BstX2I	RGATCY	1 cut(s)	743
BstYI	RGATCY	1 cut(s)	743
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	629
BtsIMutI	CAGTG	3 cut(s)	275, 502, 1008
Cac8I	GCNNGC	2 cut(s)	110, 645
Cfr13I	GGNCC	3 cut(s)	289, 608, 628
CseI	GACGC	2 cut(s)	104, 263
Csp6I	GTAC	2 cut(s)	623, 1099
CspCI	CAANNNNNGTGG	4 cut(s)	600, 635, 696, 731
CviAII	CATG	3 cut(s)	443, 481, 877
CviQI	GTAC	2 cut(s)	623, 1099
DdeI	CTNAG	5 cut(s)	23, 267, 494, 735, 747
DpnI	GATC	3 cut(s)	102, 745, 801
DpnII	GATC	3 cut(s)	100, 743, 799
DrdI	GACNNNNNNGTC	1 cut(s)	260
DriI	GACNNNNNGTC	1 cut(s)	157
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eam1104I	CTCTTC	2 cut(s)	657, 957
Eam1105I	GACNNNNNGTC	1 cut(s)	157
EarI	CTCTTC	2 cut(s)	657, 957
Eco47I	GGWCC	2 cut(s)	289, 608
Eco57I	CTGAAG	1 cut(s)	981
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRII	CCWGG	2 cut(s)	784, 981
FaeI	CATG	3 cut(s)	446, 484, 880
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	442, 480, 876
FauI	CCCGC	2 cut(s)	255, 591
Fnu4HI	GCNGC	4 cut(s)	165, 216, 332, 546
Fsp4HI	GCNGC	4 cut(s)	165, 216, 332, 546
FspBI	CTAG	5 cut(s)	417, 614, 636, 831, 851
GluI	GCNGC	4 cut(s)	165, 216, 332, 546
HaeIII	GGCC	1 cut(s)	629
HapII	CCGG	6 cut(s)	87, 202, 227, 305, 359, 377
HgaI	GACGC	2 cut(s)	104, 263
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	3 cut(s)	446, 484, 880
HinfI	GANTC	4 cut(s)	362, 389, 692, 792
HpaII	CCGG	6 cut(s)	87, 202, 227, 305, 359, 377
HphI	GGTGA	2 cut(s)	614, 916
Hpy188I	TCNGA	5 cut(s)	105, 283, 296, 748, 922
Hpy188III	TCNNGA	5 cut(s)	87, 359, 689, 831, 851
Hpy99I	CGWCG	4 cut(s)	98, 257, 263, 283
HpyAV	CCTTC	6 cut(s)	381, 421, 495, 706, 965, 1006
HpyCH4V	TGCA	6 cut(s)	412, 548, 647, 707, 950, 1006
HpyF10VI	GCNNNNNNNGC	1 cut(s)	551
HpyF3I	CTNAG	5 cut(s)	23, 267, 494, 735, 747
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	446, 484, 880
Kpn2I	TCCGGA	2 cut(s)	86, 358
Kzo9I	GATC	3 cut(s)	100, 743, 799
LmnI	GCTCC	3 cut(s)	105, 203, 373
Lsp1109I	GCAGC	2 cut(s)	151, 532
LweI	GCATC	2 cut(s)	897, 937
MaeI	CTAG	5 cut(s)	417, 614, 636, 831, 851
MalI	GATC	3 cut(s)	102, 745, 801
MbiI	CCGCTC	1 cut(s)	218
MboI	GATC	3 cut(s)	100, 743, 799
MboII	GAAGA	3 cut(s)	674, 801, 974
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	1 cut(s)	743
MluCI	AATT	5 cut(s)	337, 384, 465, 834, 1042
MlyI	GAGTC	3 cut(s)	356, 398, 701
MmeI	TCCRAC	3 cut(s)	153, 165, 261
MroI	TCCGGA	2 cut(s)	86, 358
MseI	TTAA	2 cut(s)	336, 765
MslI	CAYNNNNRTG	3 cut(s)	192, 560, 824
MspA1I	CMGCKG	2 cut(s)	164, 598
MspI	CCGG	6 cut(s)	87, 202, 227, 305, 359, 377
MspR9I	CCNGG	5 cut(s)	202, 228, 377, 786, 983
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	873
MvaI	CCWGG	2 cut(s)	786, 983
MwoI	GCNNNNNNNGC	1 cut(s)	551
NciI	CCSGG	3 cut(s)	202, 228, 377
NdeII	GATC	3 cut(s)	100, 743, 799
NlaIII	CATG	3 cut(s)	446, 484, 880
NlaIV	GGNNCC	7 cut(s)	91, 199, 290, 381, 630, 724, 914
OliI	CACNNNNGTG	1 cut(s)	824
PcsI	WCGNNNNNNNCGW	1 cut(s)	292
PctI	GAATGC	1 cut(s)	873
PfeI	GAWTC	1 cut(s)	792
PflFI	GACNNNGTC	1 cut(s)	257
PfoI	TCCNGGA	1 cut(s)	784
PkrI	GCNGC	4 cut(s)	166, 217, 333, 547
PleI	GAGTC	3 cut(s)	356, 397, 700
PpsI	GAGTC	3 cut(s)	356, 397, 700
PpuMI	RGGWCCY	1 cut(s)	289
Psp5II	RGGWCCY	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	784, 981
PspGI	CCWGG	2 cut(s)	784, 981
PspN4I	GGNNCC	7 cut(s)	91, 199, 290, 381, 630, 724, 914
PspPI	GGNCC	3 cut(s)	289, 608, 628
PspPPI	RGGWCCY	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	743
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	2 cut(s)	624, 1100
RsaNI	GTAC	2 cut(s)	623, 1099
RseI	CAYNNNNRTG	3 cut(s)	192, 560, 824
SaqAI	TTAA	2 cut(s)	336, 765
SatI	GCNGC	4 cut(s)	165, 216, 332, 546
Sau3AI	GATC	3 cut(s)	100, 743, 799
Sau96I	GGNCC	3 cut(s)	289, 608, 628
SchI	GAGTC	3 cut(s)	356, 398, 701
ScrFI	CCNGG	5 cut(s)	202, 228, 377, 786, 983
SfaNI	GCATC	2 cut(s)	897, 937
SfcI	CTRYAG	1 cut(s)	1035
SinI	GGWCC	2 cut(s)	289, 608
SmiMI	CAYNNNNRTG	3 cut(s)	192, 560, 824
SmlI	CTYRAG	2 cut(s)	474, 689
SmoI	CTYRAG	2 cut(s)	474, 689
Sse9I	AATT	5 cut(s)	337, 384, 465, 834, 1042
SsiI	CCGC	8 cut(s)	66, 72, 162, 216, 248, 331, 598, 910
SspI	AATATT	2 cut(s)	769, 989
SspMI	CTAG	5 cut(s)	417, 614, 636, 831, 851
StyD4I	CCNGG	5 cut(s)	200, 226, 375, 784, 981
TaqI	TCGA	1 cut(s)	754
TasI	AATT	5 cut(s)	337, 384, 465, 834, 1042
TauI	GCSGC	2 cut(s)	218, 334
TfiI	GAWTC	1 cut(s)	792
Tru1I	TTAA	2 cut(s)	336, 765
Tru9I	TTAA	2 cut(s)	336, 765
TscAI	CASTG	3 cut(s)	275, 502, 1008
TseI	GCWGC	2 cut(s)	164, 545
TspDTI	ATGAA	5 cut(s)	314, 431, 440, 784, 870
TspRI	CASTG	3 cut(s)	275, 502, 1008
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	289, 608
XapI	RAATTY	2 cut(s)	834, 1042
XbaI	TCTAGA	2 cut(s)	830, 850
XspI	CTAG	5 cut(s)	417, 614, 636, 831, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.