Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011549

Physical Location & Seq

Genomic Coordinates Reverse (-)

4489284 .. 4495591

Gene Structure 6308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1052800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1716 bp

ATGTCGTACGTGCCTCCGCACCTGAGGTCGAGCTCACGAACCACCACAACCACCACCACCACCACCACCGCCAAACCCTCGTTCCGAACCCTAGACGATCAGAGCAAGCTCTCCTCCTCAAACTCTCACATCAACAACGATAAGTCGTCCGGTGGTGCTTCCTTCTCCAGCTTCTCGCACTCCAATGCCTCCTCCCGCGGGAGCTCCGGCGCTGTCTCCCAGGCCAGCAGAGCTCGCCCTGACTCCGTCGTCCCTCAATGGAAGCCCTCCGACCGCGTCCTCGGCATGAAGCCTGAAATGATTGAAGAGGTTTGTTTGCGGCTTAATTTGGATGTTTCTGCTAGTCCCGACTCTGCTCCTGCTCCGGCACCGATTGAGTCTTTCACAGATATGTGTTTGCACCCTAGCATCATGAAGGATATCGACAATCACGGATACACTACACCGACATCCATTCAGGCTCAAGCTATGCCGGTTGCCCTCAGTGGGAGGGACCTATTAGGTTGTGCTGAAACTGGCAGTGGAAAAACTGCTGCATTCGCCATTCCCATGATACAGCATTGCTTGGCTCAACCTCCTGTTCAGCGCGGTGATGGACCACTAGCTCTGGTATTGGCTCCGACTAGAGAGCTTGCCCAACAAATTGAAAAAGAGGTCAAAGCTTTTAGTGCATCTCTCGAGTCCTTCAGAACTGCAATTGTGGTCGGTGGAACCAACATATCTGAGCAGAGGTCTGAGCTACGAGCAGGAGTTGATGTAGTGGTTGCCACTCCTGGACGGTTTATAGATCATTTACAACAAAGGAACACTTCTCTCACTAGAATTTCTTTTGTTGTTCTAGATGAAGCTGATAGAATGCTTGACATGGGATTTGAACCGCAGATAAGAGAGGTGATGCGGAACCTTTCTGAAAAGCATCAAACTTTGCTGTTCAGTGCAACTATGCCTGAAGAGATTGAAGAATTAGCTCAGGAATACTTAACTAAACCAGTGCAAGTGAAGGTGGGAAAAGTGAGTAGCCCTACAGCAAACGTAACTCAGACTTTGGAGAAGGTTCCTGAGAGTGAGAAGACTGATCGGCTTTTGGCTTTGCTCGTAGAGGAGGCATCTCGGGTTGAAGGAACTGGCCATCCCTTTCCCTTAACTATTGTATTTGTTGAAAGGAAGACGAGATGTGATGAAGTTGCTGAAGCTTTGGTAGCACAAGGGTTGCATGCAGTTGCTCTTCATGGTGGTCGTACTCAAACTGAAAGAGAGGCTGCTCTACGTGATTTTAGAAAAGGCACTACCAGTATTTTGGTCGCGACTGATGTTGCATCTCGCGGTTTGGATGTCTCAGGAGTTGCACATGTTATCAATTTGGATCTTCCAAAGAGCATGGAAGATTATGTGCACCGGATTGGAAGAACGGGAAGAGCAGGATCAATGGGACAATCTACTTCCTTTTACACTGATCGTGATATGTTCCTCGTGGCAAATATAAAGAAAGCAATATCAGATGCTGGATCTGGGAATGCTGTGGCTTTTGCAACTGGGAAGACTGCAAGAAGGAAAGAGAAAGAAGCAGCGGCTGCTCAAAAGCAAGCTAGGGTTGCCTTATCCAATAGCTCAACAGCGGGACCAGCATCAGTAAACATCGAGGATAAGTATCGGTTCATGTTTGCTGATTCGAACAATAAAAAAGAAGGTGCAGCAGATAGTGCTTGGGACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

572

Amino Acids

61.49

Weight (kDa)

6.39

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	150 - 322	3e-53	DEAD/DEAH box helicase
ResIII	PF04851	170 - 316	1.3e-08	Type III restriction enzyme, res subunit
Helicase_C	PF00271	377 - 474	8.3e-30	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011549)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40600 FvH4_3g40620
malus_domestica	MD03G1050800.v1.1 MD11G1052800.v1.1
prunus_persica	Prupe.6G040300_v2.0.a1 Prupe.6G040300_v2.0.a1
pyrus_communis	pycom03g04010 pycom11g04300
rosa_chinensis	RchiOBHm_Chr5g0073371
rosa_laevigata	RLG00000036381
rosa_multiflora	Rmu_sc0024948.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007870
rosa_rugosa	Rorug05G0423000 Rorug05G0423100 Rorug05G0423200
rosa_samantha	Rh5AG479600 Rh5BG500800 Rh5CG523900 Rh5DG512700
rosa_wichuraiana	Rw5G044590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	367
AccII	CGCG	5 cut(s)	198, 276, 588, 1304, 1323
AclWI	GGATC	3 cut(s)	1371, 1429, 1513
AcoI	YGGCCR	1 cut(s)	1126
AcsI	RAATTY	1 cut(s)	822
AcuI	CTGAAG	3 cut(s)	670, 969, 1209
AfaI	GTAC	2 cut(s)	8, 1240
AfiI	CCNNNNNNNGG	2 cut(s)	198, 486
AflIII	ACRYGT	1 cut(s)	1348
AgsI	TTSAA	6 cut(s)	305, 647, 875, 959, 1118, 1160
AjnI	CCWGG	2 cut(s)	219, 772
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AloI	GAACNNNNNNTCC	2 cut(s)	1114, 1146
Alw21I	GWGCWC	4 cut(s)	35, 206, 235, 1395
Alw26I	GTCTC	2 cut(s)	220, 1339
Alw44I	GTGCAC	1 cut(s)	1391
AlwI	GGATC	3 cut(s)	1371, 1429, 1513
AlwNI	CAGNNNCTG	2 cut(s)	1502, 1571
Ama87I	CYCGRG	2 cut(s)	677, 1110
AoxI	GGCC	2 cut(s)	222, 1126
ApaLI	GTGCAC	1 cut(s)	1391
ApeKI	GCWGC	5 cut(s)	533, 1259, 1565, 1571, 1691
ApoI	RAATTY	1 cut(s)	822
ArsI	GACNNNNNNTTYG	2 cut(s)	854, 886
AspLEI	GCGC	2 cut(s)	212, 588
AspS9I	GGNCC	3 cut(s)	493, 596, 1619
AsuHPI	GGTGA	2 cut(s)	602, 904
AsuII	TTCGAA	1 cut(s)	1670
AvaI	CYCGRG	2 cut(s)	677, 1110
AvaII	GGWCC	3 cut(s)	493, 596, 1619
AxyI	CCTNAGG	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	1395
BalI	TGGCCA	1 cut(s)	1128
BanI	GGYRCC	1 cut(s)	367
BanII	GRGCYC	3 cut(s)	35, 206, 235
BauI	CACGAG	1 cut(s)	1469
BbsI	GAAGAC	3 cut(s)	1076, 1172, 1544
Bbv12I	GWGCWC	4 cut(s)	35, 206, 235, 1395
BbvI	GCAGC	5 cut(s)	520, 1246, 1558, 1577, 1703
BccI	CCATC	2 cut(s)	587, 1137
BciT130I	CCWGG	2 cut(s)	221, 774
BciVI	GTATCC	1 cut(s)	428
BcoDI	GTCTC	2 cut(s)	220, 1339
BfaI	CTAG	8 cut(s)	92, 342, 405, 602, 624, 819, 839, 1587
BfmI	CTRYAG	1 cut(s)	1023
BfoI	RGCGCY	1 cut(s)	213
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	7 cut(s)	320, 534, 1260, 1566, 1569, 1572, 1692
BlsI	GCNGC	7 cut(s)	321, 535, 1261, 1567, 1570, 1573, 1693
Bme1390I	CCNGG	2 cut(s)	221, 774
Bme18I	GGWCC	3 cut(s)	493, 596, 1619
BmeT110I	CYCGRG	2 cut(s)	677, 1110
BmgT120I	GGNCC	3 cut(s)	493, 596, 1619
BmiI	GGNNCC	7 cut(s)	369, 494, 618, 712, 902, 1056, 1620
BmrFI	CCNGG	2 cut(s)	221, 774
BmrI	ACTGGG	1 cut(s)	1542
BmsI	GCATC	8 cut(s)	417, 680, 885, 925, 1115, 1325, 1489, 1634
BmuI	ACTGGG	1 cut(s)	1542
BpiI	GAAGAC	3 cut(s)	1076, 1172, 1544
BpmI	CTGGAG	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	969
Bpu14I	TTCGAA	1 cut(s)	1670
BpuEI	CTTGAG	1 cut(s)	447
BsaAI	YACGTR	2 cut(s)	10, 1268
BsaBI	GATNNNNATC	1 cut(s)	1647
BsaJI	CCNNGG	3 cut(s)	196, 219, 280
BsaWI	WCCGGW	2 cut(s)	149, 1395
BsaXI	ACNNNNNCTCC	2 cut(s)	741, 771
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 486
Bse118I	RCCGGY	1 cut(s)	472
Bse1I	ACTGG	5 cut(s)	520, 989, 1129, 1290, 1537
Bse21I	CCTNAGG	1 cut(s)	23
Bse3DI	GCAATG	1 cut(s)	559
Bse8I	GATNNNNATC	1 cut(s)	1647
BseBI	CCWGG	2 cut(s)	221, 774
BseDI	CCNNGG	3 cut(s)	196, 219, 280
BseGI	GGATG	4 cut(s)	337, 449, 1129, 1336
BseJI	GATNNNNATC	1 cut(s)	1647
BseLI	CCNNNNNNNGG	2 cut(s)	198, 486
BseMI	GCAATG	1 cut(s)	559
BseMII	CTCAG	8 cut(s)	14, 496, 714, 726, 983, 1050, 1052, 1350
BseNI	ACTGG	5 cut(s)	520, 989, 1129, 1290, 1537
BseRI	GAGGAG	4 cut(s)	103, 106, 181, 1115
BseSI	GKGCMC	1 cut(s)	1395
BseXI	GCAGC	5 cut(s)	520, 1246, 1558, 1577, 1703
BsgI	GTGCAG	1 cut(s)	1710
Bsh1236I	CGCG	5 cut(s)	198, 276, 588, 1304, 1323
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	224, 1128
BshNI	GGYRCC	1 cut(s)	367
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	4 cut(s)	35, 206, 235, 1395
BsiHKCI	CYCGRG	2 cut(s)	677, 1110
BsiSI	CCGG	5 cut(s)	150, 207, 365, 473, 1396
BsiWI	CGTACG	1 cut(s)	6
BslFI	GGGAC	5 cut(s)	236, 330, 506, 1443, 1632
BslI	CCNNNNNNNGG	2 cut(s)	198, 486
BsmAI	GTCTC	2 cut(s)	220, 1339
BsmFI	GGGAC	5 cut(s)	236, 330, 506, 1443, 1632
BsmI	GAATGC	3 cut(s)	536, 861, 1519
BsnI	GGCC	2 cut(s)	224, 1128
BsoBI	CYCGRG	2 cut(s)	677, 1110
Bsp119I	TTCGAA	1 cut(s)	1670
Bsp1286I	GDGCHC	4 cut(s)	35, 206, 235, 1395
Bsp143I	GATC	7 cut(s)	97, 787, 1075, 1363, 1421, 1453, 1505
Bsp68I	TCGCGA	1 cut(s)	1304
BspANI	GGCC	2 cut(s)	224, 1128
BspCNI	CTCAG	8 cut(s)	15, 495, 715, 727, 982, 1051, 1051, 1349
BspFNI	CGCG	5 cut(s)	198, 276, 588, 1304, 1323
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	7 cut(s)	369, 494, 618, 712, 902, 1056, 1620
BspPI	GGATC	3 cut(s)	1371, 1429, 1513
BspQI	GCTCTTC	2 cut(s)	1230, 1408
BspT104I	TTCGAA	1 cut(s)	1670
BspT107I	GGYRCC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	559
BsrFI	RCCGGY	1 cut(s)	472
BsrI	ACTGG	5 cut(s)	520, 989, 1129, 1290, 1537
BssAI	RCCGGY	1 cut(s)	472
BssECI	CCNNGG	3 cut(s)	196, 219, 280
BssMI	GATC	7 cut(s)	97, 787, 1075, 1363, 1421, 1453, 1505
BssSI	CACGAG	1 cut(s)	1469
Bst2BI	CACGAG	1 cut(s)	1469
Bst2UI	CCWGG	2 cut(s)	221, 774
Bst4CI	ACNGT	1 cut(s)	780
Bst6I	CTCTTC	4 cut(s)	300, 945, 1230, 1408
BstAPI	GCANNNNNTGC	2 cut(s)	1571, 1700
BstBAI	YACGTR	2 cut(s)	10, 1268
BstBI	TTCGAA	1 cut(s)	1670
BstC8I	GCNNGC	6 cut(s)	107, 226, 235, 633, 1215, 1584
BstDEI	CTNAG	8 cut(s)	23, 482, 723, 735, 969, 1038, 1059, 1336
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	4 cut(s)	337, 449, 1129, 1336
BstFNI	CGCG	5 cut(s)	198, 276, 588, 1304, 1323
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	212, 588
BstKTI	GATC	7 cut(s)	100, 790, 1078, 1366, 1424, 1456, 1508
BstMAI	GTCTC	2 cut(s)	220, 1339
BstMBI	GATC	7 cut(s)	97, 787, 1075, 1363, 1421, 1453, 1505
BstMCI	CGRYCG	1 cut(s)	274
BstNI	CCWGG	2 cut(s)	221, 774
BstNSI	RCATGY	2 cut(s)	1217, 1352
BstSCI	CCNGG	2 cut(s)	219, 772
BstSFI	CTRYAG	1 cut(s)	1023
BstSLI	GKGCMC	1 cut(s)	1395
BstUI	CGCG	5 cut(s)	198, 276, 588, 1304, 1323
BstV1I	GCAGC	5 cut(s)	520, 1246, 1558, 1577, 1703
BstV2I	GAAGAC	3 cut(s)	1076, 1172, 1544
BstX2I	RGATCY	2 cut(s)	1363, 1505
BstXI	CCANNNNNNTGG	1 cut(s)	1297
BstYI	RGATCY	2 cut(s)	1363, 1505
Bsu36I	CCTNAGG	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	2 cut(s)	224, 1128
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	4 cut(s)	337, 449, 1129, 1336
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	5 cut(s)	490, 526, 940, 996, 1449
BtuMI	TCGCGA	1 cut(s)	1304
Cac8I	GCNNGC	6 cut(s)	107, 226, 235, 633, 1215, 1584
CaiI	CAGNNNCTG	2 cut(s)	1502, 1571
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	2 cut(s)	212, 588
Cfr10I	RCCGGY	1 cut(s)	472
Cfr13I	GGNCC	3 cut(s)	493, 596, 1619
Cfr42I	CCGCGG	1 cut(s)	199
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	7, 1239
CviAII	CATG	9 cut(s)	286, 412, 550, 865, 1214, 1229, 1349, 1378, 1657
CviQI	GTAC	2 cut(s)	7, 1239
DdeI	CTNAG	8 cut(s)	23, 482, 723, 735, 969, 1038, 1059, 1336
DpnI	GATC	7 cut(s)	99, 789, 1077, 1365, 1423, 1455, 1507
DpnII	GATC	7 cut(s)	97, 787, 1075, 1363, 1421, 1453, 1505
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	1 cut(s)	1126
Eam1104I	CTCTTC	4 cut(s)	300, 945, 1230, 1408
EarI	CTCTTC	4 cut(s)	300, 945, 1230, 1408
Ecl136II	GAGCTC	3 cut(s)	33, 204, 233
Eco24I	GRGCYC	3 cut(s)	35, 206, 235
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	3 cut(s)	493, 596, 1619
Eco53kI	GAGCTC	3 cut(s)	33, 204, 233
Eco57I	CTGAAG	3 cut(s)	670, 969, 1209
Eco81I	CCTNAGG	1 cut(s)	23
Eco88I	CYCGRG	2 cut(s)	677, 1110
EcoICRI	GAGCTC	3 cut(s)	33, 204, 233
EcoO109I	RGGNCCY	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	219, 772
EcoRV	GATATC	1 cut(s)	421
EcoT38I	GRGCYC	3 cut(s)	35, 206, 235
FaeI	CATG	9 cut(s)	289, 415, 553, 868, 1217, 1232, 1352, 1381, 1660
FalI	AAGNNNNNCTT	2 cut(s)	793, 825
FaqI	GGGAC	5 cut(s)	236, 330, 506, 1443, 1632
FatI	CATG	9 cut(s)	285, 411, 549, 864, 1213, 1228, 1348, 1377, 1656
FauI	CCCGC	3 cut(s)	191, 203, 1609
Fnu4HI	GCNGC	7 cut(s)	320, 534, 1260, 1566, 1569, 1572, 1692
FokI	GGATG	4 cut(s)	344, 436, 1116, 1343
FriOI	GRGCYC	3 cut(s)	35, 206, 235
Fsp4HI	GCNGC	7 cut(s)	320, 534, 1260, 1566, 1569, 1572, 1692
FspBI	CTAG	8 cut(s)	92, 342, 405, 602, 624, 819, 839, 1587
GlaI	GCGC	2 cut(s)	211, 587
GluI	GCNGC	7 cut(s)	320, 534, 1260, 1566, 1569, 1572, 1692
GsuI	CTGGAG	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	224, 1128
HapII	CCGG	5 cut(s)	150, 207, 365, 473, 1396
HgaI	GACGC	1 cut(s)	265
HhaI	GCGC	2 cut(s)	212, 588
Hin1II	CATG	9 cut(s)	289, 415, 553, 868, 1217, 1232, 1352, 1381, 1660
Hin6I	GCGC	2 cut(s)	210, 586
HinP1I	GCGC	2 cut(s)	210, 586
HindIII	AAGCTT	2 cut(s)	660, 1191
HinfI	GANTC	5 cut(s)	242, 350, 377, 680, 1667
HpaII	CCGG	5 cut(s)	150, 207, 365, 473, 1396
HphI	GGTGA	2 cut(s)	602, 904
Hpy166II	GTNNAC	2 cut(s)	1393, 1633
Hpy8I	GTNNAC	2 cut(s)	1393, 1633
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	8 cut(s)	172, 409, 694, 994, 1045, 1112, 1542, 1679
HpyCH4III	ACNGT	1 cut(s)	780
HpyCH4IV	ACGT	3 cut(s)	9, 1032, 1267
HpyF3I	CTNAG	8 cut(s)	23, 482, 723, 735, 969, 1038, 1059, 1336
HpySE526I	ACGT	3 cut(s)	9, 1032, 1267
Hsp92II	CATG	9 cut(s)	289, 415, 553, 868, 1217, 1232, 1352, 1381, 1660
HspAI	GCGC	2 cut(s)	210, 586
KspI	CCGCGG	1 cut(s)	199
Kzo9I	GATC	7 cut(s)	97, 787, 1075, 1363, 1421, 1453, 1505
LguI	GCTCTTC	2 cut(s)	1230, 1408
LmnI	GCTCC	5 cut(s)	201, 209, 361, 367, 622
Lsp1109I	GCAGC	5 cut(s)	520, 1246, 1558, 1577, 1703
LweI	GCATC	8 cut(s)	417, 680, 885, 925, 1115, 1325, 1489, 1634
MaeI	CTAG	8 cut(s)	92, 342, 405, 602, 624, 819, 839, 1587
MaeII	ACGT	3 cut(s)	9, 1032, 1267
MaeIII	GTNAC	1 cut(s)	1033
MalI	GATC	7 cut(s)	99, 789, 1077, 1365, 1423, 1455, 1507
MboI	GATC	7 cut(s)	97, 787, 1075, 1363, 1421, 1453, 1505
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	2 cut(s)	1363, 1505
MhlI	GDGCHC	4 cut(s)	35, 206, 235, 1395
MlsI	TGGCCA	1 cut(s)	1128
MluCI	AATT	6 cut(s)	325, 642, 696, 822, 962, 1357
MluNI	TGGCCA	1 cut(s)	1128
MlyI	GAGTC	4 cut(s)	236, 344, 386, 689
MmeI	TCCRAC	2 cut(s)	294, 644
Mox20I	TGGCCA	1 cut(s)	1128
MscI	TGGCCA	1 cut(s)	1128
MseI	TTAA	3 cut(s)	324, 980, 1142
MslI	CAYNNNNRTG	3 cut(s)	183, 389, 548
Msp20I	TGGCCA	1 cut(s)	1128
MspA1I	CMGCKG	3 cut(s)	198, 1568, 1616
MspI	CCGG	5 cut(s)	150, 207, 365, 473, 1396
MspR9I	CCNGG	2 cut(s)	221, 774
MunI	CAATTG	1 cut(s)	696
Mva1269I	GAATGC	3 cut(s)	536, 861, 1519
MvaI	CCWGG	2 cut(s)	221, 774
MvnI	CGCG	5 cut(s)	198, 276, 588, 1304, 1323
NdeII	GATC	7 cut(s)	97, 787, 1075, 1363, 1421, 1453, 1505
NlaIII	CATG	9 cut(s)	289, 415, 553, 868, 1217, 1232, 1352, 1381, 1660
NlaIV	GGNNCC	7 cut(s)	369, 494, 618, 712, 902, 1056, 1620
NmeAIII	GCCGAG	1 cut(s)	261
NruI	TCGCGA	1 cut(s)	1304
NspI	RCATGY	2 cut(s)	1217, 1352
NspV	TTCGAA	1 cut(s)	1670
PaeI	GCATGC	1 cut(s)	1217
PaeR7I	CTCGAG	1 cut(s)	677
PagI	TCATGA	1 cut(s)	411
PciI	ACATGT	1 cut(s)	1348
PciSI	GCTCTTC	2 cut(s)	1230, 1408
PctI	GAATGC	3 cut(s)	536, 861, 1519
PfeI	GAWTC	1 cut(s)	1667
Pfl23II	CGTACG	1 cut(s)	6
PflFI	GACNNNGTC	2 cut(s)	245, 275
PfoI	TCCNGGA	1 cut(s)	772
PkrI	GCNGC	7 cut(s)	321, 535, 1261, 1567, 1570, 1573, 1693
PleI	GAGTC	4 cut(s)	236, 344, 385, 688
PpsI	GAGTC	4 cut(s)	236, 344, 385, 688
Ppu21I	YACGTR	2 cut(s)	10, 1268
PpuMI	RGGWCCY	1 cut(s)	493
PscI	ACATGT	1 cut(s)	1348
Psp124BI	GAGCTC	3 cut(s)	35, 206, 235
Psp5II	RGGWCCY	1 cut(s)	493
Psp6I	CCWGG	2 cut(s)	219, 772
PspGI	CCWGG	2 cut(s)	219, 772
PspLI	CGTACG	1 cut(s)	6
PspN4I	GGNNCC	7 cut(s)	369, 494, 618, 712, 902, 1056, 1620
PspPI	GGNCC	3 cut(s)	493, 596, 1619
PspPPI	RGGWCCY	1 cut(s)	493
PstNI	CAGNNNCTG	2 cut(s)	1502, 1571
PsuI	RGATCY	2 cut(s)	1363, 1505
PsyI	GACNNNGTC	2 cut(s)	245, 275
RruI	TCGCGA	1 cut(s)	1304
RsaI	GTAC	2 cut(s)	8, 1240
RsaNI	GTAC	2 cut(s)	7, 1239
RseI	CAYNNNNRTG	3 cut(s)	183, 389, 548
SacI	GAGCTC	3 cut(s)	35, 206, 235
SacII	CCGCGG	1 cut(s)	199
SapI	GCTCTTC	2 cut(s)	1230, 1408
SaqAI	TTAA	3 cut(s)	324, 980, 1142
SatI	GCNGC	7 cut(s)	320, 534, 1260, 1566, 1569, 1572, 1692
Sau3AI	GATC	7 cut(s)	97, 787, 1075, 1363, 1421, 1453, 1505
Sau96I	GGNCC	3 cut(s)	493, 596, 1619
SchI	GAGTC	4 cut(s)	236, 344, 386, 689
ScrFI	CCNGG	2 cut(s)	221, 774
SduI	GDGCHC	4 cut(s)	35, 206, 235, 1395
SfaNI	GCATC	8 cut(s)	417, 680, 885, 925, 1115, 1325, 1489, 1634
SfcI	CTRYAG	1 cut(s)	1023
Sfr274I	CTCGAG	1 cut(s)	677
Sfr303I	CCGCGG	1 cut(s)	199
SfuI	TTCGAA	1 cut(s)	1670
SgrBI	CCGCGG	1 cut(s)	199
SinI	GGWCC	3 cut(s)	493, 596, 1619
SlaI	CTCGAG	1 cut(s)	677
SmiMI	CAYNNNNRTG	3 cut(s)	183, 389, 548
SmlI	CTYRAG	2 cut(s)	462, 677
SmoI	CTYRAG	2 cut(s)	462, 677
SphI	GCATGC	1 cut(s)	1217
Sse9I	AATT	6 cut(s)	325, 642, 696, 822, 962, 1357
SspMI	CTAG	8 cut(s)	92, 342, 405, 602, 624, 819, 839, 1587
SstI	GAGCTC	3 cut(s)	35, 206, 235
StyD4I	CCNGG	2 cut(s)	219, 772
TaaI	ACNGT	1 cut(s)	780
TaiI	ACGT	3 cut(s)	12, 1035, 1270
TaqI	TCGA	5 cut(s)	29, 423, 678, 1638, 1670
TasI	AATT	6 cut(s)	325, 642, 696, 822, 962, 1357
TauI	GCSGC	2 cut(s)	322, 1571
TfiI	GAWTC	1 cut(s)	1667
Tru1I	TTAA	3 cut(s)	324, 980, 1142
Tru9I	TTAA	3 cut(s)	324, 980, 1142
TscAI	CASTG	5 cut(s)	490, 526, 940, 996, 1456
TseI	GCWGC	5 cut(s)	533, 1259, 1565, 1571, 1691
TspDTI	ATGAA	6 cut(s)	302, 428, 858, 1194, 1217, 1645
TspGWI	ACGGA	2 cut(s)	235, 447
TspRI	CASTG	5 cut(s)	490, 526, 940, 996, 1456
Tth111I	GACNNNGTC	2 cut(s)	245, 275
VneI	GTGCAC	1 cut(s)	1391
VpaK11BI	GGWCC	3 cut(s)	493, 596, 1619
XapI	RAATTY	1 cut(s)	822
XbaI	TCTAGA	1 cut(s)	838
XceI	RCATGY	2 cut(s)	1217, 1352
XhoI	CTCGAG	1 cut(s)	677
XspI	CTAG	8 cut(s)	92, 342, 405, 602, 624, 819, 839, 1587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.