Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011549

Physical Location & Seq

Genomic Coordinates Reverse (-)

58800644 .. 58802169

Gene Structure 1526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0423000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGTATTTTTTCCGAGGACCACCGAGGGCACCTTGCGGTCGGAAATAGCTTTTTCCGACGGGGAAAGTGGCTTTTCCGACCAAATCGCACCCTTGGAAATGACTATAATTGTTGTAGTGAATCGTTCGACCAACCCTAGATCAGTTGCTTCACTTGCTTCACTTGCTTGGTTGAAGTGGTTGCTCAGAGACTTATACGGTGTTCAATTGACCATGGCTTCTAGAAGTAGGTCAGGAAGTAATTGTTGTTCATCTCCTTCCATAACTTCAAACATGGTTACTGGAAGTTATCAATCTGTTAGTGTTTCCCCAAATGATAACCAAAACCCTTTACCACCAGTAGGTAACTTACCACCAATAGATAATAGTACCCCAACTGAAACACCTAACTTAGTTCCCACTACAACCCCAACTGAAACACCAAATCCAGATCCTGAATTGGTGGAAGCTACTGCGGGGCTGGGGAAAAGAAAAGGAGTAGATAAGACCACAAAGGAAACTGCTGCGCTTAATTTGGGAGGTGCGAACTCGTCTACGACAAGTACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

183

Amino Acids

19.27

Weight (kDa)

4.95

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011549)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40600 FvH4_3g40620
malus_domestica	MD03G1050800.v1.1 MD11G1052800.v1.1
prunus_persica	Prupe.6G040300_v2.0.a1 Prupe.6G040300_v2.0.a1
pyrus_communis	pycom03g04010 pycom11g04300
rosa_chinensis	RchiOBHm_Chr5g0073371
rosa_laevigata	RLG00000036381
rosa_multiflora	Rmu_sc0024948.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007870
rosa_rugosa	Rorug05G0423000 Rorug05G0423100 Rorug05G0423200
rosa_samantha	Rh5AG479600 Rh5BG500800 Rh5CG523900 Rh5DG512700
rosa_wichuraiana	Rw5G044590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	533
AciI	CCGC	2 cut(s)	37, 455
AclWI	GGATC	1 cut(s)	425
AfaI	GTAC	2 cut(s)	370, 544
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	3 cut(s)	175, 206, 270
AluBI	AGCT	2 cut(s)	50, 449
AluI	AGCT	2 cut(s)	50, 449
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	425
AlwNI	CAGNNNCTG	1 cut(s)	434
ApeKI	GCWGC	1 cut(s)	503
AspLEI	GCGC	1 cut(s)	508
AspS9I	GGNCC	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	18
BaeGI	GKGCMC	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	2 cut(s)	138, 222
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
BmcAI	AGTACT	1 cut(s)	544
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	31
BsaJI	CCNNGG	4 cut(s)	14, 24, 93, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	2 cut(s)	286, 338
BseDI	CCNNGG	4 cut(s)	14, 24, 93, 213
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	2 cut(s)	286, 338
BseSI	GKGCMC	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	490
BseYI	CCCAGC	1 cut(s)	460
Bsh1285I	CGRYCG	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	140, 430
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	2 cut(s)	37, 455
BspCNI	CTCAG	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	1 cut(s)	425
BspT107I	GGYRCC	1 cut(s)	29
BsrI	ACTGG	2 cut(s)	286, 338
BssECI	CCNNGG	4 cut(s)	14, 24, 93, 213
BssMI	GATC	2 cut(s)	140, 430
BssT1I	CCWWGG	2 cut(s)	93, 213
Bst4CI	ACNGT	1 cut(s)	200
BstDEI	CTNAG	2 cut(s)	185, 391
BstDSI	CCRYGG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	508
BstKTI	GATC	2 cut(s)	143, 433
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	2 cut(s)	140, 430
BstMCI	CGRYCG	1 cut(s)	41
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 164
BstSLI	GKGCMC	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	490
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BtgI	CCRYGG	1 cut(s)	213
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	369, 543
CviAII	CATG	2 cut(s)	214, 274
CviJI	RGCY	5 cut(s)	50, 72, 218, 449, 460
CviKI_1	RGCY	5 cut(s)	50, 72, 218, 449, 460
CviQI	GTAC	2 cut(s)	369, 543
DdeI	CTNAG	2 cut(s)	185, 391
DpnI	GATC	2 cut(s)	142, 432
DpnII	GATC	2 cut(s)	140, 430
Eco130I	CCWWGG	2 cut(s)	93, 213
Eco47I	GGWCC	1 cut(s)	18
EcoT14I	CCWWGG	2 cut(s)	93, 213
ErhI	CCWWGG	2 cut(s)	93, 213
FaeI	CATG	2 cut(s)	217, 277
FaiI	YATR	5 cut(s)	107, 196, 215, 263, 275
FalI	AAGNNNNNCTT	1 cut(s)	532
FatI	CATG	2 cut(s)	213, 273
FauI	CCCGC	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	533
Fnu4HI	GCNGC	1 cut(s)	504
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	2 cut(s)	138, 222
GlaI	GCGC	1 cut(s)	507
GluI	GCNGC	1 cut(s)	504
GsaI	CCCAGC	1 cut(s)	464
HhaI	GCGC	1 cut(s)	508
Hin1II	CATG	2 cut(s)	217, 277
Hin6I	GCGC	1 cut(s)	506
HinP1I	GCGC	1 cut(s)	506
HinfI	GANTC	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	534
Hpy188I	TCNGA	5 cut(s)	15, 43, 58, 79, 188
Hpy188III	TCNNGA	4 cut(s)	222, 234, 428, 434
Hpy8I	GTNNAC	1 cut(s)	534
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 164
HpyF3I	CTNAG	2 cut(s)	185, 391
Hsp92II	CATG	2 cut(s)	217, 277
HspAI	GCGC	1 cut(s)	506
Kzo9I	GATC	2 cut(s)	140, 430
LpnPI	CCDG	6 cut(s)	219, 267, 351, 441, 446, 447
Lsp1109I	GCAGC	1 cut(s)	490
MaeI	CTAG	2 cut(s)	138, 222
MaeIII	GTNAC	2 cut(s)	277, 344
MalI	GATC	2 cut(s)	142, 432
MboI	GATC	2 cut(s)	140, 430
MfeI	CAATTG	1 cut(s)	206
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	5 cut(s)	108, 206, 241, 437, 511
MmeI	TCCRAC	3 cut(s)	21, 81, 102
MnlI	CCTC	3 cut(s)	9, 19, 512
MseI	TTAA	1 cut(s)	510
MunI	CAATTG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	155, 164
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	2 cut(s)	140, 430
NlaIII	CATG	2 cut(s)	217, 277
NlaIV	GGNNCC	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	505
PspFI	CCCAGC	1 cut(s)	460
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	18
PsrI	GAACNNNNNNTAC	2 cut(s)	232, 264
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	2 cut(s)	370, 544
RsaNI	GTAC	2 cut(s)	369, 543
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	2 cut(s)	140, 430
Sau96I	GGNCC	1 cut(s)	18
ScaI	AGTACT	1 cut(s)	544
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	7 cut(s)	35, 52, 233, 346, 388, 451, 523
SinI	GGWCC	1 cut(s)	18
Sse9I	AATT	5 cut(s)	108, 206, 241, 437, 511
SsiI	CCGC	2 cut(s)	37, 455
SspMI	CTAG	2 cut(s)	138, 222
StyI	CCWWGG	2 cut(s)	93, 213
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	128
TasI	AATT	5 cut(s)	108, 206, 241, 437, 511
TatI	WGTACW	1 cut(s)	542
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TseI	GCWGC	1 cut(s)	503
TspDTI	ATGAA	1 cut(s)	240
VpaK11BI	GGWCC	1 cut(s)	18
XbaI	TCTAGA	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	533
XspI	CTAG	2 cut(s)	138, 222
ZrmI	AGTACT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.