FvH4_3g41570

PRA1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016200
Physical Location & Seq
Forward (+)
34914418 .. 34915464
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41570.t1

Sequence Viewer

Length: 645 bp
ATGTTAGAAGTTCAAAGCGTATTGAACAGTAGTTACAGGTCAAACATCCCAAAACACAACAACACACGATCCTTCAAAATGTCGCTGTCGCCACCCGCCACTGCGACCTACACCAGCATCCCCGTCACCATTCCTGCCTCTGACGTCATCTCCCAATCCATCCAGAATCTTCTCGCCGCCATCTCCCGCCACCGCCCCTGGCCTGAATTCGTGTCCTCCCTGACCCGACCCGACTCCTTCCCCTCCGCCCTCACCCGACTCCGCTTCAACGCCCGCCACTTCCGCACCAACTACATTCTCCTCATCGGTGCCTGCGGGTTCCTCTCCCTCATCGGAATCCCGGGGTGGCTTCTCGTCACGGCGGCCGTCGTCTGGCTGTGGCTGGTGATCTACTTCTTCAGGGAGGACCCACTTGTTGTGTTTGGTCATCATTTTAGTGATTGGGCTGTGTTCGTGGGCCTTGGGTTGGCTTCACTTGCGGTTGTGTGGTTGAGCAGTGGGCTTGGGACTTTGATATTGGGCCTTGGAGTTGGGTTTCTCGTTTGTGGGCTTCATGGGCTGATTCGGGATCCCGAAGGCCTGTTTCTTGACGAGAATGACGCCGCCTCGGCCGGGTTGATCGTGCCCACCTATACACCTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

215

Amino Acids

23.39

Weight (kDa)

7.88

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 61 - 199 1.2e-36 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56230
fragaria_vesca FvH4_3g41570
malus_domestica MD03G1043200.v1.1 MD03G1043300.v1.1 MD11G1046400.v1.1
prunus_persica Prupe.6G035700_v2.0.a1
pyrus_communis pycom03g03350 pycom11g03780
rosa_chinensis RchiOBHm_Chr5g0074561
rosa_laevigata RLG00000036487
rosa_roxburghii Rroxscaffold_1G00007000
rosa_rugosa Rorug05G0432700
rosa_samantha Rh5BG510700 Rh5CG534500
rosa_wichuraiana Rw5G045410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 308
AclWI GGATC 3 cut(s) 63, 563, 576
AcoI YGGCCR 2 cut(s) 363, 609
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 382
AcyI GRCGYC 2 cut(s) 144, 600
AfiI CCNNNNNNNGG 3 cut(s) 372, 466, 612
AgsI TTSAA 4 cut(s) 14, 25, 76, 268
AjnI CCWGG 1 cut(s) 197
AlwI GGATC 3 cut(s) 63, 563, 576
Ama87I CYCGRG 1 cut(s) 340
AoxI GGCC 6 cut(s) 200, 363, 457, 520, 577, 609
ApoI RAATTY 1 cut(s) 206
AspS9I GGNCC 3 cut(s) 406, 457, 520
AsuC2I CCSGG 3 cut(s) 341, 342, 613
AsuHPI GGTGA 3 cut(s) 118, 244, 397
AvaI CYCGRG 1 cut(s) 340
AvaII GGWCC 1 cut(s) 406
BaeGI GKGCMC 1 cut(s) 627
BamHI GGATCC 1 cut(s) 568
BanI GGYRCC 1 cut(s) 308
BccI CCATC 2 cut(s) 167, 188
BceAI ACGGC 2 cut(s) 350, 375
BciT130I CCWGG 1 cut(s) 199
BcnI CCSGG 3 cut(s) 341, 342, 613
BglI GCCNNNNNGGC 1 cut(s) 608
BisI GCNGC 3 cut(s) 177, 363, 603
BlsI GCNGC 3 cut(s) 178, 364, 604
Bme1390I CCNGG 4 cut(s) 199, 341, 342, 613
Bme18I GGWCC 1 cut(s) 406
BmeT110I CYCGRG 1 cut(s) 340
BmgT120I GGNCC 3 cut(s) 406, 457, 520
BmiI GGNNCC 4 cut(s) 310, 320, 408, 570
BmrFI CCNGG 4 cut(s) 199, 341, 342, 613
BmsI GCATC 1 cut(s) 126
BpuMI CCSGG 3 cut(s) 341, 342, 613
BsaHI GRCGYC 2 cut(s) 144, 600
BsaJI CCNNGG 6 cut(s) 197, 340, 341, 460, 523, 606
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 3 cut(s) 372, 466, 612
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 6 cut(s) 197, 340, 341, 460, 523, 606
BseGI GGATG 3 cut(s) 45, 117, 159
BseLI CCNNNNNNNGG 3 cut(s) 372, 466, 612
BseRI GAGGAG 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 627
BseX3I CGGCCG 2 cut(s) 363, 609
Bsh1285I CGRYCG 2 cut(s) 366, 612
BshFI GGCC 6 cut(s) 202, 365, 459, 522, 579, 611
BshNI GGYRCC 1 cut(s) 308
BsiEI CGRYCG 2 cut(s) 366, 612
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 2 cut(s) 341, 612
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 3 cut(s) 372, 466, 612
BsmFI GGGAC 1 cut(s) 520
BsnI GGCC 6 cut(s) 202, 365, 459, 522, 579, 611
BsoBI CYCGRG 1 cut(s) 340
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 4 cut(s) 68, 387, 568, 618
BspANI GGCC 6 cut(s) 202, 365, 459, 522, 579, 611
BspLI GGNNCC 4 cut(s) 310, 320, 408, 570
BspPI GGATC 3 cut(s) 63, 563, 576
BspT107I GGYRCC 1 cut(s) 308
BssECI CCNNGG 6 cut(s) 197, 340, 341, 460, 523, 606
BssMI GATC 4 cut(s) 68, 387, 568, 618
BssNI GRCGYC 2 cut(s) 144, 600
BssT1I CCWWGG 2 cut(s) 460, 523
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 29
BstACI GRCGYC 2 cut(s) 144, 600
BstC8I GCNNGC 2 cut(s) 274, 313
BstF5I GGATG 3 cut(s) 45, 117, 159
BstKTI GATC 4 cut(s) 71, 390, 571, 621
BstMBI GATC 4 cut(s) 68, 387, 568, 618
BstMCI CGRYCG 2 cut(s) 366, 612
BstMWI GCNNNNNNNGC 4 cut(s) 282, 476, 556, 608
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 4 cut(s) 197, 339, 340, 611
BstSLI GKGCMC 1 cut(s) 627
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
BstZI CGGCCG 2 cut(s) 363, 609
BsuRI GGCC 6 cut(s) 202, 365, 459, 522, 579, 611
BtsCI GGATG 3 cut(s) 45, 117, 159
BtsI GCAGTG 2 cut(s) 99, 502
BtsIMutI CAGTG 2 cut(s) 99, 502
Cac8I GCNNGC 2 cut(s) 274, 313
Cfr13I GGNCC 3 cut(s) 406, 457, 520
Cfr9I CCCGGG 1 cut(s) 340
CseI GACGC 1 cut(s) 608
CviAII CATG 1 cut(s) 554
DpnI GATC 4 cut(s) 70, 389, 570, 620
DpnII GATC 4 cut(s) 68, 387, 568, 618
EaeI YGGCCR 2 cut(s) 363, 609
EagI CGGCCG 2 cut(s) 363, 609
EciI GGCGGA 1 cut(s) 235
EclXI CGGCCG 2 cut(s) 363, 609
Eco130I CCWWGG 2 cut(s) 460, 523
Eco147I AGGCCT 1 cut(s) 579
Eco47I GGWCC 1 cut(s) 406
Eco52I CGGCCG 2 cut(s) 363, 609
Eco57I CTGAAG 1 cut(s) 382
Eco88I CYCGRG 1 cut(s) 340
EcoO109I RGGNCCY 1 cut(s) 406
EcoRI GAATTC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 197
EcoT14I CCWWGG 2 cut(s) 460, 523
ErhI CCWWGG 2 cut(s) 460, 523
FaeI CATG 1 cut(s) 557
FaiI YATR 2 cut(s) 555, 633
FaqI GGGAC 1 cut(s) 520
FatI CATG 1 cut(s) 553
FauI CCCGC 4 cut(s) 103, 194, 281, 308
Fnu4HI GCNGC 3 cut(s) 177, 363, 603
FokI GGATG 3 cut(s) 32, 104, 146
Fsp4HI GCNGC 3 cut(s) 177, 363, 603
GluI GCNGC 3 cut(s) 177, 363, 603
HaeIII GGCC 6 cut(s) 202, 365, 459, 522, 579, 611
HapII CCGG 2 cut(s) 341, 612
HgaI GACGC 1 cut(s) 608
Hin1I GRCGYC 2 cut(s) 144, 600
Hin1II CATG 1 cut(s) 557
HinfI GANTC 5 cut(s) 166, 233, 258, 336, 562
HpaII CCGG 2 cut(s) 341, 612
HphI GGTGA 3 cut(s) 118, 244, 397
Hpy188I TCNGA 3 cut(s) 142, 335, 644
Hpy188III TCNNGA 4 cut(s) 163, 566, 572, 587
Hpy99I CGWCG 1 cut(s) 371
HpyAV CCTTC 3 cut(s) 82, 247, 569
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 4 cut(s) 282, 476, 556, 608
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 2 cut(s) 144, 600
Hsp92II CATG 1 cut(s) 557
Kzo9I GATC 4 cut(s) 68, 387, 568, 618
LweI GCATC 1 cut(s) 126
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 3 cut(s) 32, 124, 355
MalI GATC 4 cut(s) 70, 389, 570, 620
MboI GATC 4 cut(s) 68, 387, 568, 618
MboII GAAGA 2 cut(s) 161, 388
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 1 cut(s) 206
MlyI GAGTC 2 cut(s) 227, 252
MnlI CCTC 9 cut(s) 148, 226, 253, 260, 311, 332, 338, 397, 616
MslI CAYNNNNRTG 1 cut(s) 435
MspI CCGG 2 cut(s) 341, 612
MspR9I CCNGG 4 cut(s) 199, 341, 342, 613
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 4 cut(s) 282, 476, 556, 608
NciI CCSGG 3 cut(s) 341, 342, 613
NdeII GATC 4 cut(s) 68, 387, 568, 618
NlaIII CATG 1 cut(s) 557
NlaIV GGNNCC 4 cut(s) 310, 320, 408, 570
NmeAIII GCCGAG 1 cut(s) 587
NmuCI GTSAC 2 cut(s) 124, 355
PceI AGGCCT 1 cut(s) 579
PfeI GAWTC 3 cut(s) 166, 336, 562
PkrI GCNGC 3 cut(s) 178, 364, 604
PleI GAGTC 2 cut(s) 227, 252
PpsI GAGTC 2 cut(s) 227, 252
PpuMI RGGWCCY 1 cut(s) 406
Psp5II RGGWCCY 1 cut(s) 406
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 4 cut(s) 310, 320, 408, 570
PspPI GGNCC 3 cut(s) 406, 457, 520
PspPPI RGGWCCY 1 cut(s) 406
PsrI GAACNNNNNNTAC 2 cut(s) 17, 49
PsuI RGATCY 1 cut(s) 568
RseI CAYNNNNRTG 1 cut(s) 435
SatI GCNGC 3 cut(s) 177, 363, 603
Sau3AI GATC 4 cut(s) 68, 387, 568, 618
Sau96I GGNCC 3 cut(s) 406, 457, 520
SchI GAGTC 2 cut(s) 227, 252
ScrFI CCNGG 4 cut(s) 199, 341, 342, 613
SduI GDGCHC 1 cut(s) 627
SetI ASST 5 cut(s) 41, 110, 147, 632, 640
SfaNI GCATC 1 cut(s) 126
SinI GGWCC 1 cut(s) 406
SmaI CCCGGG 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 435
Sse9I AATT 1 cut(s) 206
SseBI AGGCCT 1 cut(s) 579
StuI AGGCCT 1 cut(s) 579
StyD4I CCNGG 4 cut(s) 197, 339, 340, 611
StyI CCWWGG 2 cut(s) 460, 523
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 147
TasI AATT 1 cut(s) 206
TauI GCSGC 3 cut(s) 179, 365, 605
TfiI GAWTC 3 cut(s) 166, 336, 562
TscAI CASTG 2 cut(s) 106, 502
TseFI GTSAC 2 cut(s) 124, 355
Tsp45I GTSAC 2 cut(s) 124, 355
TspDTI ATGAA 1 cut(s) 542
TspMI CCCGGG 1 cut(s) 340
TspRI CASTG 2 cut(s) 106, 502
VpaK11BI GGWCC 1 cut(s) 406
XapI RAATTY 1 cut(s) 206
XmaI CCCGGG 1 cut(s) 340
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.