RchiOBHm_Chr5g0074561

PRA1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0016200
Physical Location & Seq
Forward (+)
80469293 .. 80470095
803 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34934

Sequence Viewer

Length: 597 bp
ATGTCGCAGTCGCAGTCGCAGTCGCAGCCGCAGCCGCAGCCGCAAGCCGCCACTGCGACCTACACGAGCATCCCCGTCACCATTCCCGCCGCTGACGTCATCTCCCGATCCATCCAGAACCTTCTTGGCGCCATCTCCCGCCACCGCCCCTGGCCCGAGTTCGGATCCTCTCTAAGTCGACCCGACTCCTACTCCTCCGCCCTGACCCGACTCCGCTTCAACTCCCGCCACTTCCGCACCAACTACATTCTCCTCATCGGGGTCTGCGGCTTCCTCTCCCTCATCGGAAGCCCCGGCTGGCTTCTCGCGACGGCCGCCGTCGTCGGGCTGTGGCTGGTGATCTACTTCTTCAGGGAGGACCCACTCGTGGTGTTGGGCCGCCACTTTAGTGATTGGGCTGTGTTTGTGGGCCTGGTGCTGGTTTCTCTTGCGGTTGTGTGGTTGAGCAGTGGGCTTGGGAATGTGGTGTTGGGCCTTGGAATTGGGCTGCTCGTTTGTGGGCTTCACGGGCTGGTTCGGGATACCGAAGGCTTGTTTCTCAACGAGAATGAAGCCGCCTCGGCCGGGTTGATCGGGCCCACCTATACACCCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

198

Amino Acids

21.28

Weight (kDa)

7.87

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 45 - 183 5.1e-37 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56230
fragaria_vesca FvH4_3g41570
malus_domestica MD03G1043200.v1.1 MD03G1043300.v1.1 MD11G1046400.v1.1
prunus_persica Prupe.6G035700_v2.0.a1
pyrus_communis pycom03g03350 pycom11g03780
rosa_chinensis RchiOBHm_Chr5g0074561
rosa_laevigata RLG00000036487
rosa_roxburghii Rroxscaffold_1G00007000
rosa_rugosa Rorug05G0432700
rosa_samantha Rh5BG510700 Rh5CG534500
rosa_wichuraiana Rw5G045410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 178
AccII CGCG 1 cut(s) 308
AclWI GGATC 3 cut(s) 102, 159, 172
AcoI YGGCCR 2 cut(s) 312, 561
AcuI CTGAAG 1 cut(s) 334
AcyI GRCGYC 2 cut(s) 96, 129
AfiI CCNNNNNNNGG 6 cut(s) 161, 259, 324, 367, 418, 564
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 2 cut(s) 149, 411
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AleI CACNNNNGTG 1 cut(s) 387
AlwI GGATC 3 cut(s) 102, 159, 172
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 7 cut(s) 152, 312, 376, 409, 472, 561, 575
ApaI GGGCCC 1 cut(s) 579
ApeKI GCWGC 4 cut(s) 25, 31, 37, 487
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 7 cut(s) 153, 358, 376, 409, 472, 575, 576
AsuC2I CCSGG 2 cut(s) 294, 565
AsuHPI GGTGA 2 cut(s) 70, 349
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 358
BaeGI GKGCMC 1 cut(s) 579
BamHI GGATCC 1 cut(s) 164
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 579
BauI CACGAG 2 cut(s) 64, 365
BbvI GCAGC 4 cut(s) 37, 43, 49, 474
BccI CCATC 2 cut(s) 119, 140
BceAI ACGGC 2 cut(s) 302, 327
BciT130I CCWGG 2 cut(s) 151, 413
BciVI GTATCC 1 cut(s) 514
BcnI CCSGG 2 cut(s) 294, 565
BfoI RGCGCY 1 cut(s) 132
BfuI GTATCC 1 cut(s) 514
BglI GCCNNNNNGGC 1 cut(s) 560
Bme1390I CCNGG 4 cut(s) 151, 294, 413, 565
Bme18I GGWCC 1 cut(s) 358
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 7 cut(s) 153, 358, 376, 409, 472, 575, 576
BmiI GGNNCC 4 cut(s) 130, 166, 360, 577
BmrFI CCNGG 4 cut(s) 151, 294, 413, 565
BmsI GCATC 1 cut(s) 78
BpuMI CCSGG 2 cut(s) 294, 565
BsaHI GRCGYC 2 cut(s) 96, 129
BsaJI CCNNGG 4 cut(s) 149, 292, 475, 558
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 176, 206
Bsc4I CCNNNNNNNGG 6 cut(s) 161, 259, 324, 367, 418, 564
BseBI CCWGG 2 cut(s) 151, 413
BseDI CCNNGG 4 cut(s) 149, 292, 475, 558
BseGI GGATG 2 cut(s) 69, 111
BseLI CCNNNNNNNGG 6 cut(s) 161, 259, 324, 367, 418, 564
BseRI GAGGAG 2 cut(s) 184, 242
BseSI GKGCMC 1 cut(s) 579
BseX3I CGGCCG 2 cut(s) 312, 561
BseXI GCAGC 4 cut(s) 37, 43, 49, 474
Bsh1236I CGCG 1 cut(s) 308
Bsh1285I CGRYCG 2 cut(s) 315, 564
BshFI GGCC 7 cut(s) 154, 314, 378, 411, 474, 563, 577
BshNI GGYRCC 1 cut(s) 128
BsiEI CGRYCG 2 cut(s) 315, 564
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 2 cut(s) 294, 564
BslI CCNNNNNNNGG 6 cut(s) 161, 259, 324, 367, 418, 564
BsnI GGCC 7 cut(s) 154, 314, 378, 411, 474, 563, 577
BsoBI CYCGRG 1 cut(s) 155
Bsp120I GGGCCC 1 cut(s) 575
Bsp1286I GDGCHC 1 cut(s) 579
Bsp143I GATC 4 cut(s) 107, 164, 339, 570
Bsp68I TCGCGA 1 cut(s) 308
BspANI GGCC 7 cut(s) 154, 314, 378, 411, 474, 563, 577
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 4 cut(s) 130, 166, 360, 577
BspPI GGATC 3 cut(s) 102, 159, 172
BspT107I GGYRCC 1 cut(s) 128
BssECI CCNNGG 4 cut(s) 149, 292, 475, 558
BssMI GATC 4 cut(s) 107, 164, 339, 570
BssNI GRCGYC 2 cut(s) 96, 129
BssSI CACGAG 2 cut(s) 64, 365
BssT1I CCWWGG 1 cut(s) 475
Bst2BI CACGAG 2 cut(s) 64, 365
Bst2UI CCWGG 2 cut(s) 151, 413
BstACI GRCGYC 2 cut(s) 96, 129
BstC8I GCNNGC 2 cut(s) 45, 299
BstDEI CTNAG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 69, 111
BstFNI CGCG 1 cut(s) 308
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 4 cut(s) 110, 167, 342, 573
BstMBI GATC 4 cut(s) 107, 164, 339, 570
BstMCI CGRYCG 2 cut(s) 315, 564
BstNI CCWGG 2 cut(s) 151, 413
BstSCI CCNGG 4 cut(s) 149, 292, 411, 563
BstSLI GKGCMC 1 cut(s) 579
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 4 cut(s) 37, 43, 49, 474
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
BstZI CGGCCG 2 cut(s) 312, 561
BsuI GTATCC 1 cut(s) 514
BsuRI GGCC 7 cut(s) 154, 314, 378, 411, 474, 563, 577
BtsCI GGATG 2 cut(s) 69, 111
BtsI GCAGTG 2 cut(s) 51, 454
BtsIMutI CAGTG 2 cut(s) 51, 454
BtuMI TCGCGA 1 cut(s) 308
Cac8I GCNNGC 2 cut(s) 45, 299
CfoI GCGC 1 cut(s) 131
Cfr13I GGNCC 7 cut(s) 153, 358, 376, 409, 472, 575, 576
DdeI CTNAG 1 cut(s) 173
DinI GGCGCC 1 cut(s) 130
DpnI GATC 4 cut(s) 109, 166, 341, 572
DpnII GATC 4 cut(s) 107, 164, 339, 570
EaeI YGGCCR 2 cut(s) 312, 561
EagI CGGCCG 2 cut(s) 312, 561
EciI GGCGGA 1 cut(s) 187
EclXI CGGCCG 2 cut(s) 312, 561
Eco130I CCWWGG 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 579
Eco47I GGWCC 1 cut(s) 358
Eco52I CGGCCG 2 cut(s) 312, 561
Eco57I CTGAAG 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 358
EcoRII CCWGG 2 cut(s) 149, 411
EcoT14I CCWWGG 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 579
EgeI GGCGCC 1 cut(s) 130
EheI GGCGCC 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 475
FaiI YATR 1 cut(s) 585
FauI CCCGC 3 cut(s) 94, 146, 233
FblI GTMKAC 1 cut(s) 178
FokI GGATG 2 cut(s) 56, 98
FriOI GRGCYC 1 cut(s) 579
GlaI GCGC 1 cut(s) 130
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 7 cut(s) 154, 314, 378, 411, 474, 563, 577
HapII CCGG 2 cut(s) 294, 564
HhaI GCGC 1 cut(s) 131
Hin1I GRCGYC 2 cut(s) 96, 129
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HincII GTYRAC 1 cut(s) 179
HindII GTYRAC 1 cut(s) 179
HinfI GANTC 2 cut(s) 185, 210
HpaII CCGG 2 cut(s) 294, 564
HphI GGTGA 2 cut(s) 70, 349
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 3 cut(s) 164, 287, 596
Hpy188III TCNNGA 4 cut(s) 105, 115, 307, 518
Hpy8I GTNNAC 1 cut(s) 179
Hpy99I CGWCG 3 cut(s) 313, 323, 326
HpyAV CCTTC 2 cut(s) 131, 521
HpyCH4IV ACGT 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 2 cut(s) 96, 129
HspAI GCGC 1 cut(s) 129
KasI GGCGCC 1 cut(s) 128
Kzo9I GATC 4 cut(s) 107, 164, 339, 570
Lsp1109I GCAGC 4 cut(s) 37, 43, 49, 474
LweI GCATC 1 cut(s) 78
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 76
MalI GATC 4 cut(s) 109, 166, 341, 572
MboI GATC 4 cut(s) 107, 164, 339, 570
MboII GAAGA 1 cut(s) 340
MflI RGATCY 1 cut(s) 164
MhlI GDGCHC 1 cut(s) 579
MluCI AATT 1 cut(s) 480
Mly113I GGCGCC 1 cut(s) 129
MlyI GAGTC 2 cut(s) 179, 204
MnlI CCTC 7 cut(s) 178, 205, 263, 284, 290, 349, 568
MslI CAYNNNNRTG 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 2 cut(s) 294, 564
MspR9I CCNGG 4 cut(s) 151, 294, 413, 565
MvaI CCWGG 2 cut(s) 151, 413
MvnI CGCG 1 cut(s) 308
NarI GGCGCC 1 cut(s) 129
NciI CCSGG 2 cut(s) 294, 565
NdeII GATC 4 cut(s) 107, 164, 339, 570
NlaIV GGNNCC 4 cut(s) 130, 166, 360, 577
NmeAIII GCCGAG 1 cut(s) 539
NmuCI GTSAC 1 cut(s) 76
NruI TCGCGA 1 cut(s) 308
OliI CACNNNNGTG 1 cut(s) 387
PleI GAGTC 2 cut(s) 179, 204
PluTI GGCGCC 1 cut(s) 132
PpsI GAGTC 2 cut(s) 179, 204
PpuMI RGGWCCY 1 cut(s) 358
Psp5II RGGWCCY 1 cut(s) 358
Psp6I CCWGG 2 cut(s) 149, 411
PspGI CCWGG 2 cut(s) 149, 411
PspN4I GGNNCC 4 cut(s) 130, 166, 360, 577
PspOMI GGGCCC 1 cut(s) 575
PspPI GGNCC 7 cut(s) 153, 358, 376, 409, 472, 575, 576
PspPPI RGGWCCY 1 cut(s) 358
PsuI RGATCY 1 cut(s) 164
RruI TCGCGA 1 cut(s) 308
RseI CAYNNNNRTG 1 cut(s) 387
SalI GTCGAC 1 cut(s) 177
Sau3AI GATC 4 cut(s) 107, 164, 339, 570
Sau96I GGNCC 7 cut(s) 153, 358, 376, 409, 472, 575, 576
SchI GAGTC 2 cut(s) 179, 204
ScrFI CCNGG 4 cut(s) 151, 294, 413, 565
SduI GDGCHC 1 cut(s) 579
SetI ASST 4 cut(s) 62, 99, 123, 584
SfaNI GCATC 1 cut(s) 78
SfoI GGCGCC 1 cut(s) 130
SinI GGWCC 1 cut(s) 358
SmiMI CAYNNNNRTG 1 cut(s) 387
Sse9I AATT 1 cut(s) 480
SspDI GGCGCC 1 cut(s) 128
StyD4I CCNGG 4 cut(s) 149, 292, 411, 563
StyI CCWWGG 1 cut(s) 475
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 178
TasI AATT 1 cut(s) 480
TauI GCSGC 9 cut(s) 31, 37, 43, 50, 92, 270, 317, 381, 557
TscAI CASTG 2 cut(s) 58, 454
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 4 cut(s) 25, 31, 37, 487
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 564
TspRI CASTG 2 cut(s) 58, 454
VpaK11BI GGWCC 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 178
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.