PRA1 family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G56230 |
| fragaria_vesca | FvH4_3g41570 |
| malus_domestica | MD03G1043200.v1.1 MD03G1043300.v1.1 MD11G1046400.v1.1 |
| prunus_persica | Prupe.6G035700_v2.0.a1 |
| pyrus_communis | pycom03g03350 pycom11g03780 |
| rosa_chinensis | RchiOBHm_Chr5g0074561 |
| rosa_laevigata | RLG00000036487 |
| rosa_roxburghii | Rroxscaffold_1G00007000 |
| rosa_rugosa | Rorug05G0432700 |
| rosa_samantha | Rh5BG510700 Rh5CG534500 |
| rosa_wichuraiana | Rw5G045410 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 233 |
| AccII | CGCG | 1 cut(s) | 173 |
| AccIII | TCCGGA | 2 cut(s) | 186, 489 |
| AciI | CCGC | 7 cut(s) | 112, 115, 118, 168, 171, 287, 420 |
| AclWI | GGATC | 3 cut(s) | 75, 178, 191 |
| AcoI | YGGCCR | 1 cut(s) | 288 |
| AcyI | GRCGYC | 2 cut(s) | 102, 234 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 186, 208, 297, 340, 496 |
| AjiI | CACGTC | 1 cut(s) | 358 |
| Alw26I | GTCTC | 2 cut(s) | 61, 112 |
| AlwI | GGATC | 3 cut(s) | 75, 178, 191 |
| Ama87I | CYCGRG | 2 cut(s) | 128, 265 |
| Aor13HI | TCCGGA | 2 cut(s) | 186, 489 |
| AoxI | GGCC | 9 cut(s) | 125, 152, 243, 288, 349, 369, 414, 445, 548 |
| ApaI | GGGCCC | 2 cut(s) | 247, 552 |
| ApeKI | GCWGC | 2 cut(s) | 484, 527 |
| AspLEI | GCGC | 2 cut(s) | 175, 236 |
| AsuC2I | CCSGG | 5 cut(s) | 181, 209, 266, 267, 497 |
| AsuHPI | GGTGA | 3 cut(s) | 67, 292, 322 |
| AvaI | CYCGRG | 2 cut(s) | 128, 265 |
| AvaII | GGWCC | 3 cut(s) | 189, 331, 475 |
| BaeGI | GKGCMC | 2 cut(s) | 247, 552 |
| BamHI | GGATCC | 1 cut(s) | 183 |
| BanI | GGYRCC | 1 cut(s) | 233 |
| BanII | GRGCYC | 2 cut(s) | 247, 552 |
| BbvI | GCAGC | 2 cut(s) | 471, 514 |
| BccI | CCATC | 4 cut(s) | 80, 92, 264, 568 |
| BceAI | ACGGC | 4 cut(s) | 89, 275, 300, 356 |
| BcnI | CCSGG | 5 cut(s) | 181, 209, 266, 267, 497 |
| BcoDI | GTCTC | 2 cut(s) | 61, 112 |
| BfoI | RGCGCY | 1 cut(s) | 237 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 242 |
| BisI | GCNGC | 6 cut(s) | 115, 118, 171, 288, 485, 528 |
| BlsI | GCNGC | 6 cut(s) | 116, 119, 172, 289, 486, 529 |
| Bme1390I | CCNGG | 5 cut(s) | 181, 209, 266, 267, 497 |
| Bme18I | GGWCC | 3 cut(s) | 189, 331, 475 |
| BmeT110I | CYCGRG | 2 cut(s) | 128, 265 |
| BmgBI | CACGTC | 1 cut(s) | 358 |
| BmrFI | CCNGG | 5 cut(s) | 181, 209, 266, 267, 497 |
| BmsI | GCATC | 1 cut(s) | 58 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 122, 154 |
| BpuEI | CTTGAG | 1 cut(s) | 359 |
| BpuMI | CCSGG | 5 cut(s) | 181, 209, 266, 267, 497 |
| BsaBI | GATNNNNATC | 1 cut(s) | 394 |
| BsaHI | GRCGYC | 2 cut(s) | 102, 234 |
| BsaJI | CCNNGG | 3 cut(s) | 265, 478, 535 |
| BsaWI | WCCGGW | 2 cut(s) | 186, 489 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 92, 122 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 186, 208, 297, 340, 496 |
| Bse118I | RCCGGY | 1 cut(s) | 150 |
| Bse8I | GATNNNNATC | 1 cut(s) | 394 |
| BseAI | TCCGGA | 2 cut(s) | 186, 489 |
| BseDI | CCNNGG | 3 cut(s) | 265, 478, 535 |
| BseGI | GGATG | 1 cut(s) | 275 |
| BseJI | GATNNNNATC | 1 cut(s) | 394 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 186, 208, 297, 340, 496 |
| BseRI | GAGGAG | 1 cut(s) | 130 |
| BseSI | GKGCMC | 2 cut(s) | 247, 552 |
| BseX3I | CGGCCG | 1 cut(s) | 288 |
| BseXI | GCAGC | 2 cut(s) | 471, 514 |
| Bsh1236I | CGCG | 1 cut(s) | 173 |
| Bsh1285I | CGRYCG | 2 cut(s) | 151, 291 |
| BshFI | GGCC | 9 cut(s) | 127, 154, 245, 290, 351, 371, 416, 447, 550 |
| BshNI | GGYRCC | 1 cut(s) | 233 |
| BsiEI | CGRYCG | 2 cut(s) | 151, 291 |
| BsiHKCI | CYCGRG | 2 cut(s) | 128, 265 |
| BsiSI | CCGG | 8 cut(s) | 60, 151, 181, 187, 208, 266, 490, 497 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 186, 208, 297, 340, 496 |
| BsmAI | GTCTC | 2 cut(s) | 61, 112 |
| BsmBI | CGTCTC | 2 cut(s) | 61, 112 |
| BsnI | GGCC | 9 cut(s) | 127, 154, 245, 290, 351, 371, 416, 447, 550 |
| BsoBI | CYCGRG | 2 cut(s) | 128, 265 |
| Bsp120I | GGGCCC | 2 cut(s) | 243, 548 |
| Bsp1286I | GDGCHC | 2 cut(s) | 247, 552 |
| Bsp13I | TCCGGA | 2 cut(s) | 186, 489 |
| Bsp143I | GATC | 5 cut(s) | 80, 183, 228, 312, 543 |
| BspACI | CCGC | 7 cut(s) | 112, 115, 118, 168, 171, 287, 420 |
| BspANI | GGCC | 9 cut(s) | 127, 154, 245, 290, 351, 371, 416, 447, 550 |
| BspEI | TCCGGA | 2 cut(s) | 186, 489 |
| BspFNI | CGCG | 1 cut(s) | 173 |
| BspPI | GGATC | 3 cut(s) | 75, 178, 191 |
| BspT107I | GGYRCC | 1 cut(s) | 233 |
| BsrFI | RCCGGY | 1 cut(s) | 150 |
| BssAI | RCCGGY | 1 cut(s) | 150 |
| BssECI | CCNNGG | 3 cut(s) | 265, 478, 535 |
| BssMI | GATC | 5 cut(s) | 80, 183, 228, 312, 543 |
| BssNI | GRCGYC | 2 cut(s) | 102, 234 |
| BssT1I | CCWWGG | 1 cut(s) | 535 |
| Bst4CI | ACNGT | 1 cut(s) | 9 |
| BstACI | GRCGYC | 2 cut(s) | 102, 234 |
| BstC8I | GCNNGC | 1 cut(s) | 418 |
| BstDSI | CCRYGG | 1 cut(s) | 478 |
| BstF5I | GGATG | 1 cut(s) | 275 |
| BstFNI | CGCG | 1 cut(s) | 173 |
| BstH2I | RGCGCY | 1 cut(s) | 237 |
| BstHHI | GCGC | 2 cut(s) | 175, 236 |
| BstKTI | GATC | 5 cut(s) | 83, 186, 231, 315, 546 |
| BstMAI | GTCTC | 2 cut(s) | 61, 112 |
| BstMBI | GATC | 5 cut(s) | 80, 183, 228, 312, 543 |
| BstMCI | CGRYCG | 2 cut(s) | 151, 291 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 242 |
| BstSCI | CCNGG | 5 cut(s) | 179, 207, 264, 265, 495 |
| BstSLI | GKGCMC | 2 cut(s) | 247, 552 |
| BstUI | CGCG | 1 cut(s) | 173 |
| BstV1I | GCAGC | 2 cut(s) | 471, 514 |
| BstX2I | RGATCY | 1 cut(s) | 183 |
| BstYI | RGATCY | 1 cut(s) | 183 |
| BstZI | CGGCCG | 1 cut(s) | 288 |
| BsuRI | GGCC | 9 cut(s) | 127, 154, 245, 290, 351, 371, 416, 447, 550 |
| BtgI | CCRYGG | 1 cut(s) | 478 |
| BtrI | CACGTC | 1 cut(s) | 358 |
| BtsCI | GGATG | 1 cut(s) | 275 |
| Cac8I | GCNNGC | 1 cut(s) | 418 |
| CfoI | GCGC | 2 cut(s) | 175, 236 |
| Cfr10I | RCCGGY | 1 cut(s) | 150 |
| Cfr9I | CCCGGG | 1 cut(s) | 265 |
| CseI | GACGC | 2 cut(s) | 110, 533 |
| DinI | GGCGCC | 1 cut(s) | 235 |
| DpnI | GATC | 5 cut(s) | 82, 185, 230, 314, 545 |
| DpnII | GATC | 5 cut(s) | 80, 183, 228, 312, 543 |
| EaeI | YGGCCR | 1 cut(s) | 288 |
| EagI | CGGCCG | 1 cut(s) | 288 |
| EciI | GGCGGA | 1 cut(s) | 157 |
| EclXI | CGGCCG | 1 cut(s) | 288 |
| Eco130I | CCWWGG | 1 cut(s) | 535 |
| Eco24I | GRGCYC | 2 cut(s) | 247, 552 |
| Eco32I | GATATC | 1 cut(s) | 396 |
| Eco47I | GGWCC | 3 cut(s) | 189, 331, 475 |
| Eco52I | CGGCCG | 1 cut(s) | 288 |
| Eco88I | CYCGRG | 2 cut(s) | 128, 265 |
| EcoO109I | RGGNCCY | 3 cut(s) | 243, 244, 331 |
| EcoRV | GATATC | 1 cut(s) | 396 |
| EcoT14I | CCWWGG | 1 cut(s) | 535 |
| EcoT38I | GRGCYC | 2 cut(s) | 247, 552 |
| EgeI | GGCGCC | 1 cut(s) | 235 |
| EheI | GGCGCC | 1 cut(s) | 235 |
| ErhI | CCWWGG | 1 cut(s) | 535 |
| Esp3I | CGTCTC | 2 cut(s) | 61, 112 |
| FaiI | YATR | 2 cut(s) | 36, 44 |
| FauI | CCCGC | 1 cut(s) | 119 |
| Fnu4HI | GCNGC | 6 cut(s) | 115, 118, 171, 288, 485, 528 |
| FokI | GGATG | 1 cut(s) | 282 |
| FriOI | GRGCYC | 2 cut(s) | 247, 552 |
| Fsp4HI | GCNGC | 6 cut(s) | 115, 118, 171, 288, 485, 528 |
| GlaI | GCGC | 2 cut(s) | 174, 235 |
| GluI | GCNGC | 6 cut(s) | 115, 118, 171, 288, 485, 528 |
| HaeII | RGCGCY | 1 cut(s) | 237 |
| HaeIII | GGCC | 9 cut(s) | 127, 154, 245, 290, 351, 371, 416, 447, 550 |
| HapII | CCGG | 8 cut(s) | 60, 151, 181, 187, 208, 266, 490, 497 |
| HgaI | GACGC | 2 cut(s) | 110, 533 |
| HhaI | GCGC | 2 cut(s) | 175, 236 |
| Hin1I | GRCGYC | 2 cut(s) | 102, 234 |
| Hin6I | GCGC | 2 cut(s) | 173, 234 |
| HinP1I | GCGC | 2 cut(s) | 173, 234 |
| HinfI | GANTC | 1 cut(s) | 158 |
| HpaII | CCGG | 8 cut(s) | 60, 151, 181, 187, 208, 266, 490, 497 |
| HphI | GGTGA | 3 cut(s) | 67, 292, 322 |
| Hpy166II | GTNNAC | 2 cut(s) | 425, 478 |
| Hpy188I | TCNGA | 2 cut(s) | 67, 260 |
| Hpy188III | TCNNGA | 3 cut(s) | 187, 226, 490 |
| Hpy8I | GTNNAC | 2 cut(s) | 425, 478 |
| Hpy99I | CGWCG | 2 cut(s) | 104, 296 |
| HpyAV | CCTTC | 1 cut(s) | 494 |
| HpyCH4III | ACNGT | 1 cut(s) | 9 |
| HpyCH4IV | ACGT | 1 cut(s) | 357 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 242 |
| HpySE526I | ACGT | 1 cut(s) | 357 |
| Hsp92I | GRCGYC | 2 cut(s) | 102, 234 |
| HspAI | GCGC | 2 cut(s) | 173, 234 |
| KasI | GGCGCC | 1 cut(s) | 233 |
| Kpn2I | TCCGGA | 2 cut(s) | 186, 489 |
| Kzo9I | GATC | 5 cut(s) | 80, 183, 228, 312, 543 |
| LmnI | GCTCC | 3 cut(s) | 68, 228, 492 |
| Lsp1109I | GCAGC | 2 cut(s) | 471, 514 |
| LweI | GCATC | 1 cut(s) | 58 |
| MaeII | ACGT | 1 cut(s) | 357 |
| MaeIII | GTNAC | 4 cut(s) | 3, 9, 19, 280 |
| MalI | GATC | 5 cut(s) | 82, 185, 230, 314, 545 |
| MboI | GATC | 5 cut(s) | 80, 183, 228, 312, 543 |
| MflI | RGATCY | 1 cut(s) | 183 |
| MhlI | GDGCHC | 2 cut(s) | 247, 552 |
| MluCI | AATT | 1 cut(s) | 214 |
| Mly113I | GGCGCC | 1 cut(s) | 234 |
| MlyI | GAGTC | 1 cut(s) | 152 |
| MnlI | CCTC | 6 cut(s) | 104, 148, 151, 257, 322, 334 |
| MroI | TCCGGA | 2 cut(s) | 186, 489 |
| MspA1I | CMGCKG | 1 cut(s) | 420 |
| MspI | CCGG | 8 cut(s) | 60, 151, 181, 187, 208, 266, 490, 497 |
| MspR9I | CCNGG | 5 cut(s) | 181, 209, 266, 267, 497 |
| MvnI | CGCG | 1 cut(s) | 173 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 242 |
| NarI | GGCGCC | 1 cut(s) | 234 |
| NciI | CCSGG | 5 cut(s) | 181, 209, 266, 267, 497 |
| NdeII | GATC | 5 cut(s) | 80, 183, 228, 312, 543 |
| NmuCI | GTSAC | 4 cut(s) | 3, 9, 19, 280 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 153 |
| PflFI | GACNNNGTC | 1 cut(s) | 104 |
| PkrI | GCNGC | 6 cut(s) | 116, 119, 172, 289, 486, 529 |
| PleI | GAGTC | 1 cut(s) | 152 |
| PluTI | GGCGCC | 1 cut(s) | 237 |
| PpsI | GAGTC | 1 cut(s) | 152 |
| PpuMI | RGGWCCY | 1 cut(s) | 331 |
| Psp5II | RGGWCCY | 1 cut(s) | 331 |
| PspOMI | GGGCCC | 2 cut(s) | 243, 548 |
| PspPPI | RGGWCCY | 1 cut(s) | 331 |
| PsuI | RGATCY | 1 cut(s) | 183 |
| PsyI | GACNNNGTC | 1 cut(s) | 104 |
| SatI | GCNGC | 6 cut(s) | 115, 118, 171, 288, 485, 528 |
| Sau3AI | GATC | 5 cut(s) | 80, 183, 228, 312, 543 |
| SchI | GAGTC | 1 cut(s) | 152 |
| ScrFI | CCNGG | 5 cut(s) | 181, 209, 266, 267, 497 |
| SduI | GDGCHC | 2 cut(s) | 247, 552 |
| SetI | ASST | 4 cut(s) | 35, 96, 345, 360 |
| SfaNI | GCATC | 1 cut(s) | 58 |
| SfoI | GGCGCC | 1 cut(s) | 235 |
| SinI | GGWCC | 3 cut(s) | 189, 331, 475 |
| SmaI | CCCGGG | 1 cut(s) | 267 |
| SmlI | CTYRAG | 1 cut(s) | 338 |
| SmoI | CTYRAG | 1 cut(s) | 338 |
| Sse9I | AATT | 1 cut(s) | 214 |
| SsiI | CCGC | 7 cut(s) | 112, 115, 118, 168, 171, 287, 420 |
| SspDI | GGCGCC | 1 cut(s) | 233 |
| StyD4I | CCNGG | 5 cut(s) | 179, 207, 264, 265, 495 |
| StyI | CCWWGG | 1 cut(s) | 535 |
| TaaI | ACNGT | 1 cut(s) | 9 |
| TaiI | ACGT | 1 cut(s) | 360 |
| TaqI | TCGA | 1 cut(s) | 147 |
| TasI | AATT | 1 cut(s) | 214 |
| TauI | GCSGC | 4 cut(s) | 117, 120, 173, 290 |
| TseFI | GTSAC | 4 cut(s) | 3, 9, 19, 280 |
| TseI | GCWGC | 2 cut(s) | 484, 527 |
| Tsp45I | GTSAC | 4 cut(s) | 3, 9, 19, 280 |
| TspGWI | ACGGA | 2 cut(s) | 7, 43 |
| TspMI | CCCGGG | 1 cut(s) | 265 |
| Tth111I | GACNNNGTC | 1 cut(s) | 104 |
| VpaK11BI | GGWCC | 3 cut(s) | 189, 331, 475 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 342 |
| XmaI | CCCGGG | 1 cut(s) | 265 |