Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0016200

Physical Location & Seq

Genomic Coordinates Reverse (-)

3394999 .. 3395193

Gene Structure 195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1043200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGCGGGCCTGGTGGTTGTTTCTGGTTTGGTTGCTTGGGCGAGCAGTGGGCTTGTGAACGTTACATTGGGCCTCGGAGTTGGGCTTGTGTTGTGTGGGGTCCACGGGCTGCTTCGGAACACAGAAGGCTTGTTTCTCAACGAGAATGAAGCTGCTTCTCAGGGATTGATTGGGCCCACATCTTCATCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

65

Amino Acids

6.31

Weight (kDa)

4.75

Isoelectric Point (pI)

23.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	2 - 49	6.1e-07	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56230
fragaria_vesca	FvH4_3g41570
malus_domestica	MD03G1043200.v1.1 MD03G1043300.v1.1 MD11G1046400.v1.1
prunus_persica	Prupe.6G035700_v2.0.a1
pyrus_communis	pycom03g03350 pycom11g03780
rosa_chinensis	RchiOBHm_Chr5g0074561
rosa_laevigata	RLG00000036487
rosa_roxburghii	Rroxscaffold_1G00007000
rosa_rugosa	Rorug05G0432700
rosa_samantha	Rh5BG510700 Rh5CG534500
rosa_wichuraiana	Rw5G045410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclI	AACGTT	1 cut(s)	60
AjnI	CCWGG	1 cut(s)	9
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
AoxI	GGCC	3 cut(s)	7, 70, 173
ApaI	GGGCCC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	109, 152
AspS9I	GGNCC	5 cut(s)	7, 70, 100, 173, 174
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	96, 139
BciT130I	CCWGG	1 cut(s)	11
BisI	GCNGC	2 cut(s)	110, 153
BlsI	GCNGC	2 cut(s)	111, 154
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	5 cut(s)	7, 70, 100, 173, 174
BmiI	GGNNCC	2 cut(s)	101, 175
BmrFI	CCNGG	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	73, 103
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	73, 103
BseMII	CTCAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	2 cut(s)	96, 139
BshFI	GGCC	3 cut(s)	9, 72, 175
BsnI	GGCC	3 cut(s)	9, 72, 175
Bsp120I	GGGCCC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	177
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	9, 72, 175
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	101, 175
BssECI	CCNNGG	2 cut(s)	73, 103
Bst2UI	CCWGG	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	7, 43
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	103
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	96, 139
BsuRI	GGCC	3 cut(s)	9, 72, 175
BtgI	CCRYGG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	52
Cac8I	GCNNGC	2 cut(s)	7, 43
Cfr13I	GGNCC	5 cut(s)	7, 70, 100, 173, 174
CviJI	RGCY	8 cut(s)	9, 52, 72, 85, 109, 129, 152, 175
CviKI_1	RGCY	8 cut(s)	9, 52, 72, 85, 109, 129, 152, 175
DdeI	CTNAG	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	110, 153
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	2 cut(s)	110, 153
GluI	GCNGC	2 cut(s)	110, 153
HaeIII	GGCC	3 cut(s)	9, 72, 175
Hpy166II	GTNNAC	2 cut(s)	58, 103
Hpy188I	TCNGA	3 cut(s)	77, 117, 194
Hpy8I	GTNNAC	2 cut(s)	58, 103
HpyAV	CCTTC	1 cut(s)	119
HpyCH4IV	ACGT	1 cut(s)	60
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	60
LpnPI	CCDG	3 cut(s)	9, 23, 146
Lsp1109I	GCAGC	2 cut(s)	96, 139
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	174
MhlI	GDGCHC	1 cut(s)	177
MnlI	CCTC	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	11
MvaI	CCWGG	1 cut(s)	11
NlaIV	GGNNCC	2 cut(s)	101, 175
PkrI	GCNGC	2 cut(s)	111, 154
Psp1406I	AACGTT	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	101, 175
PspOMI	GGGCCC	1 cut(s)	173
PspPI	GGNCC	5 cut(s)	7, 70, 100, 173, 174
SatI	GCNGC	2 cut(s)	110, 153
Sau96I	GGNCC	5 cut(s)	7, 70, 100, 173, 174
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	2 cut(s)	63, 154
SinI	GGWCC	1 cut(s)	100
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	9
TaiI	ACGT	1 cut(s)	63
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	2 cut(s)	109, 152
TspDTI	ATGAA	2 cut(s)	162, 174
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.