Rorug05G0432700

PRA1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
60179362 .. 60180813
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0432700.1

Sequence Viewer

Length: 1452 bp
ATGGACGACAATGAAGACGAACAGACAAGTTCTCTTCCTCCCAAGAAGAGACTGAAACAACACCATCGTCGTCAGCCTAATCATGAAGGCAGCAGCAGTGAAATCCATTCTTGCAATGTCTGCCAGAAAAGCTTCGCATCACTCAAGGCTTTGAACGGCCACATGAAAATCCACGGCGGAAGCAAGTCCAAGGCTGCCAGGCCTCCGTTTCCGGCGCCGGAACCATCTGAAGACAAAGACGATGATGGTGTTAGTGCTAGTAGTTCATCCGATACCAACATAAAGAAAGATGTTGATGTAGCAAGCTTCTTGCAATACTTGAGCGATATCGAAATTCAGAGGAACGGGCCAAACGGGCCAAGGGAAGAAGGGTATTGTTGGAAGCAATGCAGTAGAGATTACAATGCAGAAGTCCGGCTTGGTTATGGAGTTTCAGGGAAGAAGGCAATGCCGGTTCCATACAAGGACAACCCTTCATCCAAGAAAGTGAAAATTGATGGTACAACTAGAACTGGTTCTGCTTTGGTACAGAAGAAGTTGGCTGGAGGTAAAAGAAAGGCTTCTGTGGAAGATGATGAGAAAGGTGATCAAAGCAGAGTACCAAAAGATTTCACAAGTAATATTTCAAAGAAGGTAAAGATTGTTGGCAGAGGTGAAGACCCCAAAAGAGACATGGTTTCACATGACCAATCCCGGAAGCTGCAGATTCCAAGAAAGCCCCAAGTTGAGTCAAGTAAAACCTTCCCAGCTTCACAAGCAACGGAGACTTTCAGCTGGAATTGTAAAAGTAGCAGATCGGCTAGTGCGAGTGTGAAAATAGGTGAATCTGGGTTTGGTACTAAGTATGCTGCAAAAAGTAGTACGAGTTTGAAAATAGGTGAATCTGGGTTTGGTGCTAAGTATGGAACAAAGAGTAATACGAGTGTAAAAATGGGTCATTCTGGGTTTGGTACCAAGTATGCAAAGAGTAATACGAGTGTAAAAGTGGGTGAATCTGGGTTTGGTACTAAGTTGGCTGCTCGTGCTCCTACTAGTACTAAAGAAGCTGCAGTGGAGGATAACAAACAGCATGTGTGCGAAATTTGCCACAGGACGTTTAAGACTTATCAGGGTCTTGGTGGCCACAGGAGGATTCATAATTCGAAAGGAGGAGTGGCGAAAGAAGCTCCTACAGCACCTGAGGTCAGAGCAGCGACAGGGCATGAAGATGGTGAGACTGGTGTAGACCCTCAAGGCCACAGGAGTGTTGGTAGTTCTAGAAGAGTATCAGTGAGAAAAGCTCCTGCTGCACCTGTGGTTAGAGCACCGTCTGATCATGAAGATGGTGGGAGTGATGAAGACCCTGAAGCAGCATTGCATGCAGAAGAAGCAGGGGCCAAAACTGAAGGGCGCCATGAAAGAGGTTTCAATCTCAACCAAGTCCCAGATGAGGATTCGGATGGAGCTGCTTAA
Functional Annotation

Protein Analysis

483

Amino Acids

51.9

Weight (kDa)

9.23

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 36 - 58 2.4e-07 C2H2-type zinc finger
zf-C2H2_6 PF13912 357 - 380 2.4e-07 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56230
fragaria_vesca FvH4_3g41570
malus_domestica MD03G1043200.v1.1 MD03G1043300.v1.1 MD11G1046400.v1.1
prunus_persica Prupe.6G035700_v2.0.a1
pyrus_communis pycom03g03350 pycom11g03780
rosa_chinensis RchiOBHm_Chr5g0074561
rosa_laevigata RLG00000036487
rosa_roxburghii Rroxscaffold_1G00007000
rosa_rugosa Rorug05G0432700
rosa_samantha Rh5BG510700 Rh5CG534500
rosa_wichuraiana Rw5G045410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 950
AccB1I GGYRCC 3 cut(s) 214, 950, 1389
AccI GTMKAC 1 cut(s) 1224
AciI CCGC 1 cut(s) 177
AcoI YGGCCR 2 cut(s) 157, 1120
AcsI RAATTY 2 cut(s) 333, 1080
AcuI CTGAAG 3 cut(s) 249, 1365, 1404
AcyI GRCGYC 2 cut(s) 215, 1390
AfaI GTAC 8 cut(s) 502, 528, 600, 838, 862, 952, 1006, 1036
AfiI CCNNNNNNNGG 1 cut(s) 1429
AgsI TTSAA 4 cut(s) 154, 627, 871, 1408
AhlI ACTAGT 1 cut(s) 1031
AjnI CCWGG 1 cut(s) 197
AjuI GAANNNNNNNTTGG 8 cut(s) 402, 434, 816, 848, 873, 905, 984, 1016
AleI CACNNNNGTG 1 cut(s) 1242
AluBI AGCT 9 cut(s) 132, 306, 700, 749, 774, 1046, 1166, 1280, 1445
AluI AGCT 9 cut(s) 132, 306, 700, 749, 774, 1046, 1166, 1280, 1445
Alw21I GWGCWC 2 cut(s) 1027, 1306
Alw26I GTCTC 4 cut(s) 43, 663, 758, 1208
AlwNI CAGNNNCTG 1 cut(s) 1178
AoxI GGCC 7 cut(s) 157, 200, 347, 356, 1120, 1234, 1374
ApoI RAATTY 2 cut(s) 333, 1080
Asp700I GAANNNNTTC 3 cut(s) 131, 514, 559
Asp718I GGTACC 1 cut(s) 950
AspLEI GCGC 2 cut(s) 217, 1392
AspS9I GGNCC 3 cut(s) 347, 356, 1374
AsuC2I CCSGG 1 cut(s) 694
AsuHPI GGTGA 6 cut(s) 596, 665, 833, 890, 1001, 1223
AsuII TTCGAA 1 cut(s) 1142
AxyI CCTNAGG 1 cut(s) 1179
BalI TGGCCA 1 cut(s) 1122
BanI GGYRCC 3 cut(s) 214, 950, 1389
BauI CACGAG 1 cut(s) 1020
BbsI GAAGAC 4 cut(s) 21, 237, 663, 1344
Bbv12I GWGCWC 2 cut(s) 1027, 1306
BccI CCATC 7 cut(s) 72, 232, 239, 491, 1202, 1316, 1433
BceAI ACGGC 2 cut(s) 172, 190
BciT130I CCWGG 1 cut(s) 199
BclI TGATCA 2 cut(s) 586, 1312
BcnI CCSGG 1 cut(s) 694
BcoDI GTCTC 4 cut(s) 43, 663, 758, 1208
BcuI ACTAGT 1 cut(s) 1031
BfaI CTAG 5 cut(s) 258, 507, 801, 1032, 1257
BfmI CTRYAG 3 cut(s) 701, 1047, 1170
BfoI RGCGCY 2 cut(s) 218, 1393
BglI GCCNNNNNGGC 1 cut(s) 355
BmcAI AGTACT 1 cut(s) 1036
Bme1390I CCNGG 2 cut(s) 199, 694
BmgT120I GGNCC 3 cut(s) 347, 356, 1374
BmiI GGNNCC 6 cut(s) 216, 222, 456, 952, 1375, 1391
BmrFI CCNGG 2 cut(s) 199, 694
BmsI GCATC 1 cut(s) 146
BpiI GAAGAC 4 cut(s) 21, 237, 663, 1344
BplI GAGNNNNNCTC 2 cut(s) 1264, 1296
BpmI CTGGAG 1 cut(s) 564
Bpu14I TTCGAA 1 cut(s) 1142
BpuEI CTTGAG 3 cut(s) 128, 340, 1215
BpuMI CCSGG 1 cut(s) 694
BsaHI GRCGYC 2 cut(s) 215, 1390
BsaJI CCNNGG 3 cut(s) 172, 189, 359
BsaXI ACNNNNNCTCC 2 cut(s) 1234, 1264
Bsc4I CCNNNNNNNGG 1 cut(s) 1429
Bse118I RCCGGY 1 cut(s) 451
Bse1I ACTGG 2 cut(s) 517, 1222
Bse21I CCTNAGG 1 cut(s) 1179
Bse3DI GCAATG 4 cut(s) 121, 392, 453, 1352
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 3 cut(s) 172, 189, 359
BseGI GGATG 3 cut(s) 266, 476, 1444
BseLI CCNNNNNNNGG 1 cut(s) 1429
BseMI GCAATG 4 cut(s) 121, 392, 453, 1352
BseMII CTCAG 1 cut(s) 1170
BseNI ACTGG 2 cut(s) 517, 1222
BseRI GAGGAG 1 cut(s) 1164
BseYI CCCAGC 1 cut(s) 745
BsgI GTGCAG 1 cut(s) 1272
BshFI GGCC 7 cut(s) 159, 202, 349, 358, 1122, 1236, 1376
BshNI GGYRCC 3 cut(s) 214, 950, 1389
BsiHKAI GWGCWC 2 cut(s) 1027, 1306
BsiSI CCGG 5 cut(s) 212, 218, 415, 452, 694
BslFI GGGAC 1 cut(s) 1406
BslI CCNNNNNNNGG 1 cut(s) 1429
BsmAI GTCTC 4 cut(s) 43, 663, 758, 1208
BsmFI GGGAC 1 cut(s) 1406
BsnI GGCC 7 cut(s) 159, 202, 349, 358, 1122, 1236, 1376
Bsp119I TTCGAA 1 cut(s) 1142
Bsp1286I GDGCHC 2 cut(s) 1027, 1306
Bsp143I GATC 3 cut(s) 586, 794, 1312
BspACI CCGC 1 cut(s) 177
BspANI GGCC 7 cut(s) 159, 202, 349, 358, 1122, 1236, 1376
BspCNI CTCAG 1 cut(s) 1171
BspHI TCATGA 2 cut(s) 82, 1315
BspLI GGNNCC 6 cut(s) 216, 222, 456, 952, 1375, 1391
BspMAI CTGCAG 2 cut(s) 705, 1051
BspT104I TTCGAA 1 cut(s) 1142
BspT107I GGYRCC 3 cut(s) 214, 950, 1389
BsrDI GCAATG 4 cut(s) 121, 392, 453, 1352
BsrFI RCCGGY 1 cut(s) 451
BsrI ACTGG 2 cut(s) 517, 1222
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 3 cut(s) 172, 189, 359
BssMI GATC 3 cut(s) 586, 794, 1312
BssNI GRCGYC 2 cut(s) 215, 1390
BssSI CACGAG 1 cut(s) 1020
BssT1I CCWWGG 2 cut(s) 189, 359
Bst2BI CACGAG 1 cut(s) 1020
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 1308
Bst6I CTCTTC 3 cut(s) 39, 41, 1255
BstACI GRCGYC 2 cut(s) 215, 1390
BstAPI GCANNNNNTGC 2 cut(s) 120, 1358
BstBI TTCGAA 1 cut(s) 1142
BstC8I GCNNGC 2 cut(s) 304, 1359
BstDEI CTNAG 4 cut(s) 840, 897, 1008, 1179
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 3 cut(s) 266, 476, 1444
BstH2I RGCGCY 2 cut(s) 218, 1393
BstHHI GCGC 2 cut(s) 217, 1392
BstKTI GATC 3 cut(s) 589, 797, 1315
BstMAI GTCTC 4 cut(s) 43, 663, 758, 1208
BstMBI GATC 3 cut(s) 586, 794, 1312
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 2 cut(s) 1073, 1361
BstSCI CCNGG 2 cut(s) 197, 692
BstSFI CTRYAG 3 cut(s) 701, 1047, 1170
BstV2I GAAGAC 4 cut(s) 21, 237, 663, 1344
Bsu36I CCTNAGG 1 cut(s) 1179
BsuRI GGCC 7 cut(s) 159, 202, 349, 358, 1122, 1236, 1376
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 3 cut(s) 266, 476, 1444
BtsI GCAGTG 2 cut(s) 103, 1056
BtsIMutI CAGTG 3 cut(s) 103, 1056, 1275
Cac8I GCNNGC 2 cut(s) 304, 1359
CaiI CAGNNNCTG 1 cut(s) 1178
CciI TCATGA 2 cut(s) 82, 1315
CfoI GCGC 2 cut(s) 217, 1392
Cfr10I RCCGGY 1 cut(s) 451
Cfr13I GGNCC 3 cut(s) 347, 356, 1374
Csp6I GTAC 8 cut(s) 501, 527, 599, 837, 861, 951, 1005, 1035
CviAII CATG 9 cut(s) 83, 163, 673, 683, 1070, 1202, 1316, 1358, 1394
CviQI GTAC 8 cut(s) 501, 527, 599, 837, 861, 951, 1005, 1035
DdeI CTNAG 4 cut(s) 840, 897, 1008, 1179
DinI GGCGCC 2 cut(s) 216, 1391
DpnI GATC 3 cut(s) 588, 796, 1314
DpnII GATC 3 cut(s) 586, 794, 1312
EaeI YGGCCR 2 cut(s) 157, 1120
Eam1104I CTCTTC 3 cut(s) 39, 41, 1255
EarI CTCTTC 3 cut(s) 39, 41, 1255
EciI GGCGGA 1 cut(s) 192
Eco130I CCWWGG 2 cut(s) 189, 359
Eco147I AGGCCT 1 cut(s) 202
Eco32I GATATC 1 cut(s) 328
Eco57I CTGAAG 3 cut(s) 249, 1365, 1404
Eco81I CCTNAGG 1 cut(s) 1179
EcoRII CCWGG 1 cut(s) 197
EcoRV GATATC 1 cut(s) 328
EcoT14I CCWWGG 2 cut(s) 189, 359
EgeI GGCGCC 2 cut(s) 216, 1391
EheI GGCGCC 2 cut(s) 216, 1391
ErhI CCWWGG 2 cut(s) 189, 359
FaeI CATG 9 cut(s) 86, 166, 676, 686, 1073, 1205, 1319, 1361, 1397
FalI AAGNNNNNCTT 4 cut(s) 402, 434, 544, 576
FaqI GGGAC 1 cut(s) 1406
FatI CATG 9 cut(s) 82, 162, 672, 682, 1069, 1201, 1315, 1357, 1393
FbaI TGATCA 2 cut(s) 586, 1312
FblI GTMKAC 1 cut(s) 1224
FokI GGATG 2 cut(s) 253, 463
FspBI CTAG 5 cut(s) 258, 507, 801, 1032, 1257
GlaI GCGC 2 cut(s) 216, 1391
GsaI CCCAGC 1 cut(s) 749
GsuI CTGGAG 1 cut(s) 564
HaeII RGCGCY 2 cut(s) 218, 1393
HaeIII GGCC 7 cut(s) 159, 202, 349, 358, 1122, 1236, 1376
HapII CCGG 5 cut(s) 212, 218, 415, 452, 694
HhaI GCGC 2 cut(s) 217, 1392
Hin1I GRCGYC 2 cut(s) 215, 1390
Hin1II CATG 9 cut(s) 86, 166, 676, 686, 1073, 1205, 1319, 1361, 1397
Hin6I GCGC 2 cut(s) 215, 1390
HinP1I GCGC 2 cut(s) 215, 1390
HindIII AAGCTT 2 cut(s) 130, 304
HinfI GANTC 7 cut(s) 706, 728, 824, 881, 992, 1132, 1433
HpaII CCGG 5 cut(s) 212, 218, 415, 452, 694
HphI GGTGA 6 cut(s) 596, 665, 833, 890, 1001, 1223
Hpy166II GTNNAC 1 cut(s) 1225
Hpy188I TCNGA 6 cut(s) 229, 271, 339, 1187, 1312, 1438
Hpy188III TCNNGA 3 cut(s) 83, 1257, 1316
Hpy8I GTNNAC 1 cut(s) 1225
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 7 cut(s) 80, 362, 436, 483, 625, 751, 1379
HpyCH4III ACNGT 1 cut(s) 1308
HpyCH4IV ACGT 1 cut(s) 1094
HpyF3I CTNAG 4 cut(s) 840, 897, 1008, 1179
HpySE526I ACGT 1 cut(s) 1094
Hsp92I GRCGYC 2 cut(s) 215, 1390
Hsp92II CATG 9 cut(s) 86, 166, 676, 686, 1073, 1205, 1319, 1361, 1397
HspAI GCGC 2 cut(s) 215, 1390
KasI GGCGCC 2 cut(s) 214, 1389
KpnI GGTACC 1 cut(s) 954
Ksp22I TGATCA 2 cut(s) 586, 1312
Kzo9I GATC 3 cut(s) 586, 794, 1312
LmnI GCTCC 4 cut(s) 1030, 1171, 1285, 1442
LweI GCATC 1 cut(s) 146
MaeI CTAG 5 cut(s) 258, 507, 801, 1032, 1257
MaeII ACGT 1 cut(s) 1094
MalI GATC 3 cut(s) 588, 796, 1314
MboI GATC 3 cut(s) 586, 794, 1312
MhlI GDGCHC 2 cut(s) 1027, 1306
MlsI TGGCCA 1 cut(s) 1122
MluCI AATT 5 cut(s) 333, 492, 778, 1080, 1138
MluNI TGGCCA 1 cut(s) 1122
Mly113I GGCGCC 2 cut(s) 215, 1390
MlyI GAGTC 1 cut(s) 737
MmeI TCCRAC 1 cut(s) 359
Mox20I TGGCCA 1 cut(s) 1122
MroXI GAANNNNTTC 3 cut(s) 131, 514, 559
MscI TGGCCA 1 cut(s) 1122
MseI TTAA 2 cut(s) 1098, 1450
MslI CAYNNNNRTG 3 cut(s) 1206, 1242, 1320
Msp20I TGGCCA 1 cut(s) 1122
MspA1I CMGCKG 1 cut(s) 774
MspI CCGG 5 cut(s) 212, 218, 415, 452, 694
MspR9I CCNGG 2 cut(s) 199, 694
MvaI CCWGG 1 cut(s) 199
NarI GGCGCC 2 cut(s) 215, 1390
NciI CCSGG 1 cut(s) 694
NdeII GATC 3 cut(s) 586, 794, 1312
NlaIII CATG 9 cut(s) 86, 166, 676, 686, 1073, 1205, 1319, 1361, 1397
NlaIV GGNNCC 6 cut(s) 216, 222, 456, 952, 1375, 1391
NspI RCATGY 2 cut(s) 1073, 1361
NspV TTCGAA 1 cut(s) 1142
OliI CACNNNNGTG 1 cut(s) 1242
PaeI GCATGC 1 cut(s) 1361
PagI TCATGA 2 cut(s) 82, 1315
PceI AGGCCT 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 803
PdmI GAANNNNTTC 3 cut(s) 131, 514, 559
PfeI GAWTC 6 cut(s) 706, 824, 881, 992, 1132, 1433
PfoI TCCNGGA 1 cut(s) 692
PleI GAGTC 1 cut(s) 736
PluTI GGCGCC 2 cut(s) 218, 1393
PpsI GAGTC 1 cut(s) 736
Psp6I CCWGG 1 cut(s) 197
PspFI CCCAGC 1 cut(s) 745
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 6 cut(s) 216, 222, 456, 952, 1375, 1391
PspPI GGNCC 3 cut(s) 347, 356, 1374
PstI CTGCAG 2 cut(s) 705, 1051
PstNI CAGNNNCTG 1 cut(s) 1178
PvuII CAGCTG 1 cut(s) 774
RsaI GTAC 8 cut(s) 502, 528, 600, 838, 862, 952, 1006, 1036
RsaNI GTAC 8 cut(s) 501, 527, 599, 837, 861, 951, 1005, 1035
RseI CAYNNNNRTG 3 cut(s) 1206, 1242, 1320
SaqAI TTAA 2 cut(s) 1098, 1450
Sau3AI GATC 3 cut(s) 586, 794, 1312
Sau96I GGNCC 3 cut(s) 347, 356, 1374
ScaI AGTACT 1 cut(s) 1036
SchI GAGTC 1 cut(s) 737
ScrFI CCNGG 2 cut(s) 199, 694
SduI GDGCHC 2 cut(s) 1027, 1306
SfaNI GCATC 1 cut(s) 146
SfcI CTRYAG 3 cut(s) 701, 1047, 1170
SfiI GGCCNNNNNGGCC 1 cut(s) 355
SfoI GGCGCC 2 cut(s) 216, 1391
SfuI TTCGAA 1 cut(s) 1142
SmiMI CAYNNNNRTG 3 cut(s) 1206, 1242, 1320
SmlI CTYRAG 3 cut(s) 143, 319, 1230
SmoI CTYRAG 3 cut(s) 143, 319, 1230
SpeI ACTAGT 1 cut(s) 1031
SphI GCATGC 1 cut(s) 1361
Sse9I AATT 5 cut(s) 333, 492, 778, 1080, 1138
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 1 cut(s) 177
SspDI GGCGCC 2 cut(s) 214, 1389
SspI AATATT 1 cut(s) 622
SspMI CTAG 5 cut(s) 258, 507, 801, 1032, 1257
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 197, 692
StyI CCWWGG 2 cut(s) 189, 359
TaaI ACNGT 1 cut(s) 1308
TaiI ACGT 1 cut(s) 1097
TaqI TCGA 2 cut(s) 330, 1142
TasI AATT 5 cut(s) 333, 492, 778, 1080, 1138
TatI WGTACW 1 cut(s) 1034
TfiI GAWTC 6 cut(s) 706, 824, 881, 992, 1132, 1433
Tru1I TTAA 2 cut(s) 1098, 1450
Tru9I TTAA 2 cut(s) 1098, 1450
TscAI CASTG 3 cut(s) 103, 1056, 1275
TspGWI ACGGA 2 cut(s) 195, 776
TspRI CASTG 3 cut(s) 103, 1056, 1275
XapI RAATTY 2 cut(s) 333, 1080
XbaI TCTAGA 1 cut(s) 1256
XceI RCATGY 2 cut(s) 1073, 1361
XcmI CCANNNNNNNNNTGG 2 cut(s) 670, 1244
XmiI GTMKAC 1 cut(s) 1224
XmnI GAANNNNTTC 3 cut(s) 131, 514, 559
XspI CTAG 5 cut(s) 258, 507, 801, 1032, 1257
ZrmI AGTACT 1 cut(s) 1036
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.