Proteasome activator subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G13330 |
| fragaria_vesca | FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 |
| malus_domestica | MD00G1206400.v1.1 MD00G1206500.v1.1 MD00G1206600.v1.1 MD03G1040600.v1.1 MD11G1042000.v1.1 |
| prunus_persica | Prupe.6G032900_v2.0.a1 |
| pyrus_communis | pycom03g03130 pycom11g03610 |
| rosa_chinensis | RchiOBHm_Chr5g0075021 |
| rosa_laevigata | RLG00000036518 |
| rosa_multiflora | Rmu_sc0006984.1_g000002 |
| rosa_rugosa | Rorug05G0435500 |
| rosa_samantha | Rh5AG492800 Rh5BG514100 Rh5CG537700 Rh5DG526400 |
| rosa_wichuraiana | Rw5G045680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3588 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 164 |
| Acc16I | TGCGCA | 1 cut(s) | 3127 |
| AccB1I | GGYRCC | 1 cut(s) | 3097 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2537 |
| AccBSI | CCGCTC | 2 cut(s) | 105, 2060 |
| AccI | GTMKAC | 2 cut(s) | 1352, 1922 |
| AccII | CGCG | 3 cut(s) | 1950, 2833, 4714 |
| AclI | AACGTT | 1 cut(s) | 4922 |
| AclWI | GGATC | 8 cut(s) | 550, 617, 786, 799, 1457, 2085, 2255, 2402 |
| AcoI | YGGCCR | 3 cut(s) | 3038, 3839, 4803 |
| AcuI | CTGAAG | 7 cut(s) | 411, 1151, 1941, 2334, 4035, 5123, 5412 |
| AcyI | GRCGYC | 1 cut(s) | 337 |
| AfaI | GTAC | 6 cut(s) | 2201, 2400, 3404, 4212, 4949, 5205 |
| AfeI | AGCGCT | 2 cut(s) | 1037, 4271 |
| AflIII | ACRYGT | 1 cut(s) | 2935 |
| AgeI | ACCGGT | 1 cut(s) | 5305 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3175 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1704, 1736, 2524, 2556 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 2160, 2192, 4173, 4174, 4205, 4206 |
| Alw21I | GWGCWC | 3 cut(s) | 924, 2430, 3258 |
| AlwI | GGATC | 8 cut(s) | 550, 617, 786, 799, 1457, 2085, 2255, 2402 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 389, 1187, 5336 |
| Ama87I | CYCGRG | 2 cut(s) | 72, 4130 |
| Aor51HI | AGCGCT | 2 cut(s) | 1037, 4271 |
| AoxI | GGCC | 7 cut(s) | 2287, 2733, 2828, 3038, 3839, 4803, 5065 |
| ApaI | GGGCCC | 1 cut(s) | 2291 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 921, 953 |
| AsiGI | ACCGGT | 1 cut(s) | 5305 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2991, 3179, 3205 |
| AspLEI | GCGC | 4 cut(s) | 1038, 3128, 4272, 4714 |
| AsuC2I | CCSGG | 5 cut(s) | 73, 74, 116, 1850, 3007 |
| AsuII | TTCGAA | 3 cut(s) | 927, 2905, 2995 |
| AvaI | CYCGRG | 2 cut(s) | 72, 4130 |
| AxyI | CCTNAGG | 1 cut(s) | 2378 |
| BaeGI | GKGCMC | 3 cut(s) | 2291, 2842, 3501 |
| BalI | TGGCCA | 3 cut(s) | 3040, 3841, 4805 |
| BamHI | GGATCC | 1 cut(s) | 791 |
| BanI | GGYRCC | 1 cut(s) | 3097 |
| BanII | GRGCYC | 2 cut(s) | 2291, 3258 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2443, 2475 |
| BauI | CACGAG | 1 cut(s) | 687 |
| BbsI | GAAGAC | 1 cut(s) | 1512 |
| Bbv12I | GWGCWC | 3 cut(s) | 924, 2430, 3258 |
| BbvCI | CCTCAGC | 1 cut(s) | 1809 |
| BceAI | ACGGC | 2 cut(s) | 461, 4306 |
| BciVI | GTATCC | 1 cut(s) | 3534 |
| BclI | TGATCA | 3 cut(s) | 2143, 2194, 4462 |
| BcnI | CCSGG | 5 cut(s) | 73, 74, 116, 1850, 3007 |
| BfmI | CTRYAG | 9 cut(s) | 703, 1359, 1923, 4185, 4257, 4345, 4407, 5049, 5181 |
| BfoI | RGCGCY | 2 cut(s) | 1039, 4273 |
| BfuI | GTATCC | 1 cut(s) | 3534 |
| BglII | AGATCT | 2 cut(s) | 4913, 5089 |
| BmcAI | AGTACT | 1 cut(s) | 4212 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3175 |
| BmeT110I | CYCGRG | 2 cut(s) | 72, 4130 |
| BmrI | ACTGGG | 2 cut(s) | 2878, 5244 |
| BmsI | GCATC | 7 cut(s) | 13, 1253, 1444, 1942, 2670, 3319, 3455 |
| BmuI | ACTGGG | 2 cut(s) | 2878, 5244 |
| BpiI | GAAGAC | 1 cut(s) | 1512 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3959, 3991 |
| BpmI | CTGGAG | 9 cut(s) | 418, 938, 1325, 1974, 2577, 3986, 4376, 4841, 5313 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1809 |
| Bpu14I | TTCGAA | 3 cut(s) | 927, 2905, 2995 |
| BpuEI | CTTGAG | 3 cut(s) | 2660, 3137, 5423 |
| BpuMI | CCSGG | 5 cut(s) | 73, 74, 116, 1850, 3007 |
| BsaAI | YACGTR | 1 cut(s) | 1213 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3040, 5088 |
| BsaHI | GRCGYC | 1 cut(s) | 337 |
| BsaI | GGTCTC | 2 cut(s) | 151, 2163 |
| BsaWI | WCCGGW | 1 cut(s) | 5305 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 53, 83, 1323, 1353, 1972, 2002, 4839, 4869 |
| Bse118I | RCCGGY | 1 cut(s) | 5305 |
| Bse21I | CCTNAGG | 1 cut(s) | 2378 |
| Bse3DI | GCAATG | 3 cut(s) | 870, 2462, 4766 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3040, 5088 |
| BseJI | GATNNNNATC | 2 cut(s) | 3040, 5088 |
| BseMI | GCAATG | 3 cut(s) | 870, 2462, 4766 |
| BseRI | GAGGAG | 5 cut(s) | 56, 73, 3460, 3983, 4373 |
| BseSI | GKGCMC | 3 cut(s) | 2291, 2842, 3501 |
| BseYI | CCCAGC | 2 cut(s) | 859, 3494 |
| Bsh1236I | CGCG | 3 cut(s) | 1950, 2833, 4714 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2360 |
| BshFI | GGCC | 7 cut(s) | 2289, 2735, 2830, 3040, 3841, 4805, 5067 |
| BshNI | GGYRCC | 1 cut(s) | 3097 |
| BshTI | ACCGGT | 1 cut(s) | 5305 |
| BsiEI | CGRYCG | 1 cut(s) | 2360 |
| BsiHKAI | GWGCWC | 3 cut(s) | 924, 2430, 3258 |
| BsiHKCI | CYCGRG | 2 cut(s) | 72, 4130 |
| BsiSI | CCGG | 7 cut(s) | 73, 116, 451, 1850, 3006, 3285, 5306 |
| BslFI | GGGAC | 3 cut(s) | 647, 2040, 4860 |
| BsmBI | CGTCTC | 3 cut(s) | 85, 1262, 3654 |
| BsmFI | GGGAC | 3 cut(s) | 647, 2040, 4860 |
| BsmI | GAATGC | 4 cut(s) | 1648, 2855, 4019, 4036 |
| BsnI | GGCC | 7 cut(s) | 2289, 2735, 2830, 3040, 3841, 4805, 5067 |
| Bso31I | GGTCTC | 2 cut(s) | 151, 2163 |
| BsoBI | CYCGRG | 2 cut(s) | 72, 4130 |
| Bsp119I | TTCGAA | 3 cut(s) | 927, 2905, 2995 |
| Bsp120I | GGGCCC | 1 cut(s) | 2287 |
| Bsp1286I | GDGCHC | 6 cut(s) | 924, 2291, 2430, 2842, 3258, 3501 |
| Bsp1407I | TGTACA | 1 cut(s) | 4947 |
| BspANI | GGCC | 7 cut(s) | 2289, 2735, 2830, 3040, 3841, 4805, 5067 |
| BspFNI | CGCG | 3 cut(s) | 1950, 2833, 4714 |
| BspHI | TCATGA | 1 cut(s) | 4465 |
| BspMAI | CTGCAG | 1 cut(s) | 5053 |
| BspPI | GGATC | 8 cut(s) | 550, 617, 786, 799, 1457, 2085, 2255, 2402 |
| BspQI | GCTCTTC | 2 cut(s) | 2067, 5388 |
| BspT104I | TTCGAA | 3 cut(s) | 927, 2905, 2995 |
| BspT107I | GGYRCC | 1 cut(s) | 3097 |
| BspTNI | GGTCTC | 2 cut(s) | 151, 2163 |
| BsrBI | CCGCTC | 2 cut(s) | 105, 2060 |
| BsrDI | GCAATG | 3 cut(s) | 870, 2462, 4766 |
| BsrFI | RCCGGY | 1 cut(s) | 5305 |
| BsrGI | TGTACA | 1 cut(s) | 4947 |
| BssAI | RCCGGY | 1 cut(s) | 5305 |
| BssNI | GRCGYC | 1 cut(s) | 337 |
| BssSI | CACGAG | 1 cut(s) | 687 |
| BssT1I | CCWWGG | 6 cut(s) | 1476, 1968, 3093, 3196, 4800, 4806 |
| Bst2BI | CACGAG | 1 cut(s) | 687 |
| Bst6I | CTCTTC | 7 cut(s) | 2067, 2166, 2816, 3190, 3838, 5141, 5388 |
| BstACI | GRCGYC | 1 cut(s) | 337 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3134 |
| BstAUI | TGTACA | 1 cut(s) | 4947 |
| BstBAI | YACGTR | 1 cut(s) | 1213 |
| BstBI | TTCGAA | 3 cut(s) | 927, 2905, 2995 |
| BstDSI | CCRYGG | 3 cut(s) | 518, 2574, 2831 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 4236, 5072 |
| BstFNI | CGCG | 3 cut(s) | 1950, 2833, 4714 |
| BstH2I | RGCGCY | 2 cut(s) | 1039, 4273 |
| BstHHI | GCGC | 4 cut(s) | 1038, 3128, 4272, 4714 |
| BstMCI | CGRYCG | 1 cut(s) | 2360 |
| BstNSI | RCATGY | 6 cut(s) | 1708, 1836, 2484, 2621, 2939, 5048 |
| BstSFI | CTRYAG | 9 cut(s) | 703, 1359, 1923, 4185, 4257, 4345, 4407, 5049, 5181 |
| BstSLI | GKGCMC | 3 cut(s) | 2291, 2842, 3501 |
| BstUI | CGCG | 3 cut(s) | 1950, 2833, 4714 |
| BstV2I | GAAGAC | 1 cut(s) | 1512 |
| BstX2I | RGATCY | 4 cut(s) | 542, 791, 4913, 5089 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 4514 |
| BstYI | RGATCY | 4 cut(s) | 542, 791, 4913, 5089 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2378 |
| BsuI | GTATCC | 1 cut(s) | 3534 |
| BsuRI | GGCC | 7 cut(s) | 2289, 2735, 2830, 3040, 3841, 4805, 5067 |
| BtgI | CCRYGG | 3 cut(s) | 518, 2574, 2831 |
| BtgZI | GCGATG | 2 cut(s) | 994, 1965 |
| BtsI | GCAGTG | 4 cut(s) | 1633, 3117, 3880, 4007 |
| CaiI | CAGNNNCTG | 3 cut(s) | 389, 1187, 5336 |
| CciI | TCATGA | 1 cut(s) | 4465 |
| CfoI | GCGC | 4 cut(s) | 1038, 3128, 4272, 4714 |
| Cfr10I | RCCGGY | 1 cut(s) | 5305 |
| Cfr42I | CCGCGG | 1 cut(s) | 2834 |
| Cfr9I | CCCGGG | 1 cut(s) | 72 |
| CseI | GACGC | 4 cut(s) | 326, 2204, 2702, 4539 |
| CsiI | ACCWGGT | 1 cut(s) | 901 |
| Csp6I | GTAC | 6 cut(s) | 2200, 2399, 3403, 4211, 4948, 5204 |
| CspAI | ACCGGT | 1 cut(s) | 5305 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4243, 4278 |
| CviQI | GTAC | 6 cut(s) | 2200, 2399, 3403, 4211, 4948, 5204 |
| DraI | TTTAAA | 3 cut(s) | 3021, 3516, 4638 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 164 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3175 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 164 |
| EaeI | YGGCCR | 3 cut(s) | 3038, 3839, 4803 |
| Eam1104I | CTCTTC | 7 cut(s) | 2067, 2166, 2816, 3190, 3838, 5141, 5388 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3175 |
| EarI | CTCTTC | 7 cut(s) | 2067, 2166, 2816, 3190, 3838, 5141, 5388 |
| EciI | GGCGGA | 2 cut(s) | 4378, 4921 |
| Ecl136II | GAGCTC | 1 cut(s) | 3256 |
| Eco130I | CCWWGG | 6 cut(s) | 1476, 1968, 3093, 3196, 4800, 4806 |
| Eco147I | AGGCCT | 1 cut(s) | 5067 |
| Eco24I | GRGCYC | 2 cut(s) | 2291, 3258 |
| Eco31I | GGTCTC | 2 cut(s) | 151, 2163 |
| Eco32I | GATATC | 3 cut(s) | 1767, 3861, 4764 |
| Eco47III | AGCGCT | 2 cut(s) | 1037, 4271 |
| Eco53kI | GAGCTC | 1 cut(s) | 3256 |
| Eco57I | CTGAAG | 7 cut(s) | 411, 1151, 1941, 2334, 4035, 5123, 5412 |
| Eco81I | CCTNAGG | 1 cut(s) | 2378 |
| Eco88I | CYCGRG | 2 cut(s) | 72, 4130 |
| EcoICRI | GAGCTC | 1 cut(s) | 3256 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 4236, 5072 |
| EcoO109I | RGGNCCY | 4 cut(s) | 386, 2054, 2288, 4847 |
| EcoRI | GAATTC | 2 cut(s) | 590, 3201 |
| EcoRV | GATATC | 3 cut(s) | 1767, 3861, 4764 |
| EcoT14I | CCWWGG | 6 cut(s) | 1476, 1968, 3093, 3196, 4800, 4806 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 1441 |
| EcoT38I | GRGCYC | 2 cut(s) | 2291, 3258 |
| ErhI | CCWWGG | 6 cut(s) | 1476, 1968, 3093, 3196, 4800, 4806 |
| Esp3I | CGTCTC | 3 cut(s) | 85, 1262, 3654 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2427, 2459, 5385, 5417 |
| FaqI | GGGAC | 3 cut(s) | 647, 2040, 4860 |
| FauI | CCCGC | 3 cut(s) | 2065, 2586, 3818 |
| FauNDI | CATATG | 1 cut(s) | 1257 |
| FbaI | TGATCA | 3 cut(s) | 2143, 2194, 4462 |
| FblI | GTMKAC | 2 cut(s) | 1352, 1922 |
| FriOI | GRGCYC | 2 cut(s) | 2291, 3258 |
| FspI | TGCGCA | 1 cut(s) | 3127 |
| GlaI | GCGC | 4 cut(s) | 1037, 3127, 4271, 4713 |
| GsaI | CCCAGC | 2 cut(s) | 863, 3498 |
| GsuI | CTGGAG | 9 cut(s) | 418, 938, 1325, 1974, 2577, 3986, 4376, 4841, 5313 |
| HaeII | RGCGCY | 2 cut(s) | 1039, 4273 |
| HaeIII | GGCC | 7 cut(s) | 2289, 2735, 2830, 3040, 3841, 4805, 5067 |
| HapII | CCGG | 7 cut(s) | 73, 116, 451, 1850, 3006, 3285, 5306 |
| HgaI | GACGC | 4 cut(s) | 326, 2204, 2702, 4539 |
| HhaI | GCGC | 4 cut(s) | 1038, 3128, 4272, 4714 |
| Hin1I | GRCGYC | 1 cut(s) | 337 |
| Hin6I | GCGC | 4 cut(s) | 1036, 3126, 4270, 4712 |
| HinP1I | GCGC | 4 cut(s) | 1036, 3126, 4270, 4712 |
| HincII | GTYRAC | 4 cut(s) | 940, 1353, 4797, 4926 |
| HindII | GTYRAC | 4 cut(s) | 940, 1353, 4797, 4926 |
| HindIII | AAGCTT | 3 cut(s) | 251, 2170, 5115 |
| HpaII | CCGG | 7 cut(s) | 73, 116, 451, 1850, 3006, 3285, 5306 |
| Hpy99I | CGWCG | 1 cut(s) | 5349 |
| HpyCH4IV | ACGT | 7 cut(s) | 709, 1212, 1327, 3723, 4150, 4922, 4928 |
| HpySE526I | ACGT | 7 cut(s) | 709, 1212, 1327, 3723, 4150, 4922, 4928 |
| Hsp92I | GRCGYC | 1 cut(s) | 337 |
| HspAI | GCGC | 4 cut(s) | 1036, 3126, 4270, 4712 |
| Ksp22I | TGATCA | 3 cut(s) | 2143, 2194, 4462 |
| KspI | CCGCGG | 1 cut(s) | 2834 |
| LguI | GCTCTTC | 2 cut(s) | 2067, 5388 |
| LmnI | GCTCC | 7 cut(s) | 27, 101, 110, 919, 1216, 2135, 2558 |
| LweI | GCATC | 7 cut(s) | 13, 1253, 1444, 1942, 2670, 3319, 3455 |
| MabI | ACCWGGT | 1 cut(s) | 901 |
| MaeII | ACGT | 7 cut(s) | 709, 1212, 1327, 3723, 4150, 4922, 4928 |
| MbiI | CCGCTC | 2 cut(s) | 105, 2060 |
| MfeI | CAATTG | 5 cut(s) | 1052, 1803, 2007, 2018, 4971 |
| MflI | RGATCY | 4 cut(s) | 542, 791, 4913, 5089 |
| MhlI | GDGCHC | 6 cut(s) | 924, 2291, 2430, 2842, 3258, 3501 |
| MlsI | TGGCCA | 3 cut(s) | 3040, 3841, 4805 |
| MluNI | TGGCCA | 3 cut(s) | 3040, 3841, 4805 |
| MlyI | GAGTC | 6 cut(s) | 53, 56, 629, 1722, 2434, 4463 |
| MmeI | TCCRAC | 7 cut(s) | 204, 489, 1303, 1554, 1795, 3875, 4360 |
| Mox20I | TGGCCA | 3 cut(s) | 3040, 3841, 4805 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 1441 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2991, 3179, 3205 |
| MscI | TGGCCA | 3 cut(s) | 3040, 3841, 4805 |
| MslI | CAYNNNNRTG | 7 cut(s) | 1550, 2223, 2982, 3327, 4041, 4482, 4638 |
| Msp20I | TGGCCA | 3 cut(s) | 3040, 3841, 4805 |
| MspA1I | CMGCKG | 2 cut(s) | 2833, 5054 |
| MspI | CCGG | 7 cut(s) | 73, 116, 451, 1850, 3006, 3285, 5306 |
| MunI | CAATTG | 5 cut(s) | 1052, 1803, 2007, 2018, 4971 |
| Mva1269I | GAATGC | 4 cut(s) | 1648, 2855, 4019, 4036 |
| MvnI | CGCG | 3 cut(s) | 1950, 2833, 4714 |
| NciI | CCSGG | 5 cut(s) | 73, 74, 116, 1850, 3007 |
| NdeI | CATATG | 1 cut(s) | 1257 |
| NmeAIII | GCCGAG | 1 cut(s) | 64 |
| NmuCI | GTSAC | 6 cut(s) | 2216, 2387, 2437, 3875, 4246, 5269 |
| NsbI | TGCGCA | 1 cut(s) | 3127 |
| NsiI | ATGCAT | 2 cut(s) | 6, 1441 |
| NspI | RCATGY | 6 cut(s) | 1708, 1836, 2484, 2621, 2939, 5048 |
| NspV | TTCGAA | 3 cut(s) | 927, 2905, 2995 |
| PaeI | GCATGC | 1 cut(s) | 1708 |
| PagI | TCATGA | 1 cut(s) | 4465 |
| PceI | AGGCCT | 1 cut(s) | 5067 |
| PciI | ACATGT | 1 cut(s) | 2935 |
| PciSI | GCTCTTC | 2 cut(s) | 2067, 5388 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 84 |
| PctI | GAATGC | 4 cut(s) | 1648, 2855, 4019, 4036 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2991, 3179, 3205 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2537 |
| PfoI | TCCNGGA | 3 cut(s) | 2120, 2507, 4857 |
| PinAI | ACCGGT | 1 cut(s) | 5305 |
| PleI | GAGTC | 6 cut(s) | 52, 56, 629, 1722, 2434, 4462 |
| PpsI | GAGTC | 6 cut(s) | 52, 56, 629, 1722, 2434, 4462 |
| Ppu21I | YACGTR | 1 cut(s) | 1213 |
| PpuMI | RGGWCCY | 3 cut(s) | 386, 2054, 4847 |
| PscI | ACATGT | 1 cut(s) | 2935 |
| PsiI | TTATAA | 1 cut(s) | 3588 |
| Psp124BI | GAGCTC | 1 cut(s) | 3258 |
| Psp1406I | AACGTT | 1 cut(s) | 4922 |
| Psp5II | RGGWCCY | 3 cut(s) | 386, 2054, 4847 |
| PspFI | CCCAGC | 2 cut(s) | 859, 3494 |
| PspOMI | GGGCCC | 1 cut(s) | 2287 |
| PspPPI | RGGWCCY | 3 cut(s) | 386, 2054, 4847 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1906, 1938, 4234, 4266 |
| PstI | CTGCAG | 1 cut(s) | 5053 |
| PstNI | CAGNNNCTG | 3 cut(s) | 389, 1187, 5336 |
| PsuI | RGATCY | 4 cut(s) | 542, 791, 4913, 5089 |
| PvuII | CAGCTG | 1 cut(s) | 5054 |
| RsaI | GTAC | 6 cut(s) | 2201, 2400, 3404, 4212, 4949, 5205 |
| RsaNI | GTAC | 6 cut(s) | 2200, 2399, 3403, 4211, 4948, 5204 |
| RseI | CAYNNNNRTG | 7 cut(s) | 1550, 2223, 2982, 3327, 4041, 4482, 4638 |
| SacI | GAGCTC | 1 cut(s) | 3258 |
| SacII | CCGCGG | 1 cut(s) | 2834 |
| SalI | GTCGAC | 1 cut(s) | 1351 |
| SapI | GCTCTTC | 2 cut(s) | 2067, 5388 |
| ScaI | AGTACT | 1 cut(s) | 4212 |
| SchI | GAGTC | 6 cut(s) | 53, 56, 629, 1722, 2434, 4463 |
| SduI | GDGCHC | 6 cut(s) | 924, 2291, 2430, 2842, 3258, 3501 |
| SexAI | ACCWGGT | 1 cut(s) | 901 |
| SfaNI | GCATC | 7 cut(s) | 13, 1253, 1444, 1942, 2670, 3319, 3455 |
| SfcI | CTRYAG | 9 cut(s) | 703, 1359, 1923, 4185, 4257, 4345, 4407, 5049, 5181 |
| Sfr303I | CCGCGG | 1 cut(s) | 2834 |
| SfuI | TTCGAA | 3 cut(s) | 927, 2905, 2995 |
| SgrAI | CRCCGGYG | 1 cut(s) | 5305 |
| SgrBI | CCGCGG | 1 cut(s) | 2834 |
| SmaI | CCCGGG | 1 cut(s) | 74 |
| SmiI | ATTTAAAT | 1 cut(s) | 4638 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 1550, 2223, 2982, 3327, 4041, 4482, 4638 |
| SmlI | CTYRAG | 3 cut(s) | 2639, 3152, 5402 |
| SmoI | CTYRAG | 3 cut(s) | 2639, 3152, 5402 |
| SphI | GCATGC | 1 cut(s) | 1708 |
| SseBI | AGGCCT | 1 cut(s) | 5067 |
| SspI | AATATT | 5 cut(s) | 956, 2944, 3675, 4032, 4570 |
| SstI | GAGCTC | 1 cut(s) | 3258 |
| StuI | AGGCCT | 1 cut(s) | 5067 |
| StyI | CCWWGG | 6 cut(s) | 1476, 1968, 3093, 3196, 4800, 4806 |
| SwaI | ATTTAAAT | 1 cut(s) | 4638 |
| TaiI | ACGT | 7 cut(s) | 712, 1215, 1330, 3726, 4153, 4925, 4931 |
| TaqI | TCGA | 9 cut(s) | 638, 927, 1352, 1875, 2905, 2995, 3293, 4215, 5344 |
| TaqII | GACCGA | 3 cut(s) | 432, 2145, 2912 |
| TatI | WGTACW | 5 cut(s) | 2199, 2398, 4210, 4947, 5203 |
| TauI | GCSGC | 2 cut(s) | 2833, 3916 |
| TseFI | GTSAC | 6 cut(s) | 2216, 2387, 2437, 3875, 4246, 5269 |
| Tsp45I | GTSAC | 6 cut(s) | 2216, 2387, 2437, 3875, 4246, 5269 |
| TspGWI | ACGGA | 6 cut(s) | 76, 139, 507, 5096, 5170, 5212 |
| TspMI | CCCGGG | 1 cut(s) | 72 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2537 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 4236, 5072 |
| XceI | RCATGY | 6 cut(s) | 1708, 1836, 2484, 2621, 2939, 5048 |
| XmaI | CCCGGG | 1 cut(s) | 72 |
| XmiI | GTMKAC | 2 cut(s) | 1352, 1922 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2991, 3179, 3205 |
| ZrmI | AGTACT | 1 cut(s) | 4212 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 1441 |