Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006984.1

Orthogroup ID

OG0006814

Physical Location & Seq

Genomic Coordinates Forward (+)

5882 .. 6612

Gene Structure 731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006984.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgcatctttacaatgcttggcttcctccacctgtcgccgaggagtccatcaaggagagggactccttctctcgcgtcgtctcctccgtcaagaactcctaccgctccgatgaccctgattcagtctatgcaactctcaaatgggtctctgtcattgaccttttcatcaaggcaaagagtgaagtgtctatggaagatgcgagtggactgattgaatttggattggagttgtttcatgtatcggagaataagctttatgcacaggttaggtggggaaatattcttgtgaaattactcaacaagtatcggaagaagttgtcgttgaaggtaaagtggcgccctttgtatgatctgtgttgttggtttgtttctatttgccaaggtgaagtcactcgggacgtaaccgcaaatgaggcccccaatttccagaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005839 GO:0006508 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010498 GO:0010499 GO:0010604 GO:0010952 GO:0016504 GO:0019222 GO:0019538 GO:0030162 GO:0030163 GO:0030234 GO:0031323 GO:0031325 GO:0032268 GO:0032270 GO:0032991 GO:0042393 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051603 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070577 GO:0070628 GO:0071704 GO:0080090 GO:0098772 GO:0140030 GO:0140033 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

BLM10_mid DUF3437

Protein Analysis

144

Amino Acids

16.66

Weight (kDa)

8.39

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13330
fragaria_vesca	FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830
malus_domestica	MD00G1206400.v1.1 MD00G1206500.v1.1 MD00G1206600.v1.1 MD03G1040600.v1.1 MD11G1042000.v1.1
prunus_persica	Prupe.6G032900_v2.0.a1
pyrus_communis	pycom03g03130 pycom11g03610
rosa_chinensis	RchiOBHm_Chr5g0075021
rosa_laevigata	RLG00000036518
rosa_multiflora	Rmu_sc0006984.1_g000002
rosa_rugosa	Rorug05G0435500
rosa_samantha	Rh5AG492800 Rh5BG514100 Rh5CG537700 Rh5DG526400
rosa_wichuraiana	Rw5G045680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	336
AccBSI	CCGCTC	1 cut(s)	105
AccII	CGCG	1 cut(s)	75
AciI	CCGC	2 cut(s)	103, 405
AcsI	RAATTY	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	215, 325
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw26I	GTCTC	2 cut(s)	85, 151
Ama87I	CYCGRG	1 cut(s)	393
AoxI	GGCC	1 cut(s)	414
ApoI	RAATTY	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	395
AvaI	CYCGRG	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	336
BccI	CCATC	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	85, 151
BfoI	RGCGCY	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	393
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	2 cut(s)	338, 417
BmsI	GCATC	2 cut(s)	13, 187
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BsaHI	GRCGYC	1 cut(s)	337
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	39, 379
BseDI	CCNNGG	2 cut(s)	39, 379
BseRI	GAGGAG	2 cut(s)	56, 73
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	416
BshNI	GGYRCC	1 cut(s)	336
BsiHKCI	CYCGRG	1 cut(s)	393
BslFI	GGGAC	2 cut(s)	74, 410
BsmAI	GTCTC	2 cut(s)	85, 151
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	2 cut(s)	74, 410
BsnI	GGCC	1 cut(s)	416
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	2 cut(s)	103, 405
BspANI	GGCC	1 cut(s)	416
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	338, 417
BspT107I	GGYRCC	1 cut(s)	336
BspTNI	GGTCTC	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	39, 379
BssMI	GATC	1 cut(s)	349
BssNI	GRCGYC	1 cut(s)	337
BssT1I	CCWWGG	1 cut(s)	379
BstACI	GRCGYC	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	2 cut(s)	85, 151
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstUI	CGCG	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	416
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	415
CseI	GACGC	1 cut(s)	64
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	3 cut(s)	22, 253, 416
CviKI_1	RGCY	3 cut(s)	22, 253, 416
DinI	GGCGCC	1 cut(s)	338
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	379
Eco31I	GGTCTC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	379
EcoT22I	ATGCAT	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	338
EheI	GGCGCC	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	379
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	1 cut(s)	239
FaiI	YATR	5 cut(s)	129, 191, 237, 258, 348
FaqI	GGGAC	2 cut(s)	74, 410
FatI	CATG	1 cut(s)	235
GlaI	GCGC	1 cut(s)	338
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	416
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	1 cut(s)	339
Hin1I	GRCGYC	1 cut(s)	337
Hin1II	CATG	1 cut(s)	239
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	3 cut(s)	44, 62, 119
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	3 cut(s)	109, 244, 309
Hpy188III	TCNNGA	3 cut(s)	91, 395, 427
Hpy8I	GTNNAC	1 cut(s)	206
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	76, 319
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	3 cut(s)	4, 131, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpySE526I	ACGT	1 cut(s)	399
Hsp92I	GRCGYC	1 cut(s)	337
Hsp92II	CATG	1 cut(s)	239
HspAI	GCGC	1 cut(s)	337
KasI	GGCGCC	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	3 cut(s)	45, 129, 248
LweI	GCATC	2 cut(s)	13, 187
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	388, 400
MalI	GATC	1 cut(s)	351
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	1 cut(s)	349
MboII	GAAGA	2 cut(s)	206, 322
MluCI	AATT	3 cut(s)	215, 290, 421
Mly113I	GGCGCC	1 cut(s)	337
MlyI	GAGTC	2 cut(s)	53, 56
MnlI	CCTC	5 cut(s)	34, 36, 51, 94, 406
Mph1103I	ATGCAT	1 cut(s)	6
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	413
NarI	GGCGCC	1 cut(s)	337
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	2 cut(s)	338, 417
NmeAIII	GCCGAG	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	388
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	119
PleI	GAGTC	2 cut(s)	52, 56
PluTI	GGCGCC	1 cut(s)	340
PpsI	GAGTC	2 cut(s)	52, 56
PspN4I	GGNNCC	2 cut(s)	338, 417
PspPI	GGNCC	1 cut(s)	415
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	2 cut(s)	53, 56
SetI	ASST	8 cut(s)	34, 162, 255, 267, 272, 330, 385, 402
SfaNI	GCATC	2 cut(s)	13, 187
SfoI	GGCGCC	1 cut(s)	338
Sse9I	AATT	3 cut(s)	215, 290, 421
SsiI	CCGC	2 cut(s)	103, 405
SspDI	GGCGCC	1 cut(s)	336
SspI	AATATT	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	379
TaiI	ACGT	1 cut(s)	402
TasI	AATT	3 cut(s)	215, 290, 421
TfiI	GAWTC	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	2 cut(s)	154, 224
TspGWI	ACGGA	1 cut(s)	76
XapI	RAATTY	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.