Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006814

Physical Location & Seq

Genomic Coordinates Reverse (-)

50286575 .. 50288261

Gene Structure 1687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1206500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTTTGAGGTTCCTGTGGCAAATGGAGGTGGATCATATCCATTCTCTGTGGATGTTCCAAGAAACACAAGATTCTTGTTCTCCAATAAGACAGTTACCCCAGCAAAGGCCATCGCAAAGTCCATTGTCAATTTGCTAAGGCCTGGTAGCTCAGCACAGCAGCATTTTGAAAAATTGGTCAATCTCTTAGAACAGTATTACCATCCTTCTAATGGTGGTCGCTGGACTTATGCATTAGAACGTTTTTTGCTCTATTTGGTAATTACATTCCAGAAACGCTTACAGCGTGAACAACTCAACATTGATAAGGATGGACAGGATGAACAGTACCTAGGAAGATCAGAAAGGACGTTCTTTGTCAAGGTGGTGCTCAAGTTAATTGATCGTGGTCAATATAGCAAGAATGAACATCTTTCTGAAACAGTTGCTGCTGCAACTTCAATTTTGTCTTATGTGGAGCCTACTCTCGTCCTTCCTTTTGTCGCATCTCGCTTCCAAATGGCCTTGGAGACGATGACTGCCACCCACCAGTTGCAGATTGCAGTGACGTCGGTAGCATTTGTTGGGCGTTCATTGTTCCTCACATCCCTATCAAAATCAGTTGATCCTGGTAATGGTGATGAGTTCATAGAGCTTTTGATGGTTTCACTATCCAACGCATTACTTGGTATGGATGCCAATGATCCTCCTAAAACCTTAGCAACAATGCAATTAATTGGCTCTATATATTTTCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005839 GO:0006508 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010498 GO:0010499 GO:0010604 GO:0010952 GO:0016504 GO:0019222 GO:0019538 GO:0030162 GO:0030163 GO:0030234 GO:0031323 GO:0031325 GO:0032268 GO:0032270 GO:0032991 GO:0042393 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051603 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070577 GO:0070628 GO:0071704 GO:0080090 GO:0098772 GO:0140030 GO:0140033 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

BLM10_mid DUF3437

Protein Analysis

247

Amino Acids

27.51

Weight (kDa)

7.91

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HEAT_PSME4_mid	PF16507	57 - 242	1.3e-30	Proteasome activator complex subunit 4, mid HEAT repeats region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13330
fragaria_vesca	FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830
malus_domestica	MD00G1206400.v1.1 MD00G1206500.v1.1 MD00G1206600.v1.1 MD03G1040600.v1.1 MD11G1042000.v1.1
prunus_persica	Prupe.6G032900_v2.0.a1
pyrus_communis	pycom03g03130 pycom11g03610
rosa_chinensis	RchiOBHm_Chr5g0075021
rosa_laevigata	RLG00000036518
rosa_multiflora	Rmu_sc0006984.1_g000002
rosa_rugosa	Rorug05G0435500
rosa_samantha	Rh5AG492800 Rh5BG514100 Rh5CG537700 Rh5DG526400
rosa_wichuraiana	Rw5G045680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	551
AclI	AACGTT	1 cut(s)	241
AclWI	GGATC	3 cut(s)	40, 599, 677
AcyI	GRCGYC	1 cut(s)	548
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	3 cut(s)	106, 212, 614
AgsI	TTSAA	2 cut(s)	170, 441
AjnI	CCWGG	2 cut(s)	142, 607
AluBI	AGCT	2 cut(s)	150, 634
AluI	AGCT	2 cut(s)	150, 634
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	1 cut(s)	503
AlwI	GGATC	3 cut(s)	40, 599, 677
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	3 cut(s)	108, 140, 501
ApeKI	GCWGC	3 cut(s)	160, 428, 431
AseI	ATTAAT	1 cut(s)	713
AspA2I	CCTAGG	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	629
AvrII	CCTAGG	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	3 cut(s)	172, 415, 418
BccI	CCATC	4 cut(s)	119, 210, 305, 634
BcgI	CGANNNNNNTGC	2 cut(s)	531, 565
BciT130I	CCWGG	2 cut(s)	144, 609
BcoDI	GTCTC	1 cut(s)	503
BfaI	CTAG	1 cut(s)	332
BisI	GCNGC	3 cut(s)	161, 429, 432
BlnI	CCTAGG	1 cut(s)	331
BlpI	GCTNAGC	1 cut(s)	151
BlsI	GCNGC	3 cut(s)	162, 430, 433
Bme1390I	CCNGG	2 cut(s)	144, 609
BmiI	GGNNCC	2 cut(s)	12, 459
BmrFI	CCNGG	2 cut(s)	144, 609
BmsI	GCATC	2 cut(s)	494, 664
Bpu10I	CCTNAGC	2 cut(s)	137, 697
Bpu1102I	GCTNAGC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	331, 504
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 212, 614
Bse1I	ACTGG	1 cut(s)	529
BseBI	CCWGG	2 cut(s)	144, 609
BseDI	CCNNGG	2 cut(s)	331, 504
BseGI	GGATG	6 cut(s)	58, 202, 316, 325, 584, 679
BseLI	CCNNNNNNNGG	3 cut(s)	106, 212, 614
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	529
BseXI	GCAGC	3 cut(s)	172, 415, 418
BseYI	CCCAGC	1 cut(s)	100
BshFI	GGCC	3 cut(s)	110, 142, 503
BsiHKAI	GWGCWC	1 cut(s)	372
BslI	CCNNNNNNNGG	3 cut(s)	106, 212, 614
BsmAI	GTCTC	1 cut(s)	503
BsmBI	CGTCTC	1 cut(s)	503
BsnI	GGCC	3 cut(s)	110, 142, 503
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	5 cut(s)	32, 338, 382, 604, 682
Bsp1720I	GCTNAGC	1 cut(s)	151
BspANI	GGCC	3 cut(s)	110, 142, 503
BspCNI	CTCAG	1 cut(s)	164
BspLI	GGNNCC	2 cut(s)	12, 459
BspPI	GGATC	3 cut(s)	40, 599, 677
BsrI	ACTGG	1 cut(s)	529
BssECI	CCNNGG	2 cut(s)	331, 504
BssMI	GATC	5 cut(s)	32, 338, 382, 604, 682
BssNI	GRCGYC	1 cut(s)	548
BssT1I	CCWWGG	2 cut(s)	331, 504
Bst2UI	CCWGG	2 cut(s)	144, 609
Bst4CI	ACNGT	4 cut(s)	94, 195, 327, 424
BstACI	GRCGYC	1 cut(s)	548
BstDEI	CTNAG	4 cut(s)	137, 151, 187, 697
BstF5I	GGATG	6 cut(s)	58, 202, 316, 325, 584, 679
BstKTI	GATC	5 cut(s)	35, 341, 385, 607, 685
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	5 cut(s)	32, 338, 382, 604, 682
BstNI	CCWGG	2 cut(s)	144, 609
BstSCI	CCNGG	2 cut(s)	142, 607
BstV1I	GCAGC	3 cut(s)	172, 415, 418
BsuRI	GGCC	3 cut(s)	110, 142, 503
BtgZI	GCGATG	1 cut(s)	97
BtsCI	GGATG	6 cut(s)	58, 202, 316, 325, 584, 679
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	549
CaiI	CAGNNNCTG	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	328
CviJI	RGCY	7 cut(s)	110, 142, 150, 460, 503, 634, 720
CviKI_1	RGCY	7 cut(s)	110, 142, 150, 460, 503, 634, 720
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	4 cut(s)	137, 151, 187, 697
DpnI	GATC	5 cut(s)	34, 340, 384, 606, 684
DpnII	GATC	5 cut(s)	32, 338, 382, 604, 682
Eco130I	CCWWGG	2 cut(s)	331, 504
Eco147I	AGGCCT	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	142, 607
EcoT14I	CCWWGG	2 cut(s)	331, 504
EcoT22I	ATGCAT	1 cut(s)	235
ErhI	CCWWGG	2 cut(s)	331, 504
Esp3I	CGTCTC	1 cut(s)	503
FaiI	YATR	8 cut(s)	37, 231, 396, 453, 629, 671, 725, 727
Fnu4HI	GCNGC	3 cut(s)	161, 429, 432
FokI	GGATG	6 cut(s)	65, 189, 323, 332, 571, 686
Fsp4HI	GCNGC	3 cut(s)	161, 429, 432
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	3 cut(s)	161, 429, 432
GsaI	CCCAGC	1 cut(s)	104
HaeIII	GGCC	3 cut(s)	110, 142, 503
Hin1I	GRCGYC	1 cut(s)	548
HinfI	GANTC	1 cut(s)	72
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	2 cut(s)	343, 418
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	290
Hpy99I	CGWCG	1 cut(s)	553
HpyAV	CCTTC	2 cut(s)	216, 482
HpyCH4III	ACNGT	4 cut(s)	94, 195, 327, 424
HpyCH4IV	ACGT	3 cut(s)	241, 350, 548
HpyCH4V	TGCA	5 cut(s)	233, 434, 535, 542, 709
HpyF3I	CTNAG	4 cut(s)	137, 151, 187, 697
HpySE526I	ACGT	3 cut(s)	241, 350, 548
Hsp92I	GRCGYC	1 cut(s)	548
Kzo9I	GATC	5 cut(s)	32, 338, 382, 604, 682
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	3 cut(s)	172, 415, 418
LweI	GCATC	2 cut(s)	494, 664
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	3 cut(s)	241, 350, 548
MaeIII	GTNAC	2 cut(s)	94, 544
MalI	GATC	5 cut(s)	34, 340, 384, 606, 684
MboI	GATC	5 cut(s)	32, 338, 382, 604, 682
MboII	GAAGA	1 cut(s)	348
MhlI	GDGCHC	1 cut(s)	372
MluCI	AATT	7 cut(s)	130, 173, 261, 378, 441, 710, 714
MmeI	TCCRAC	1 cut(s)	678
MnlI	CCTC	3 cut(s)	20, 590, 696
Mph1103I	ATGCAT	1 cut(s)	235
MseI	TTAA	2 cut(s)	377, 713
MspR9I	CCNGG	2 cut(s)	144, 609
MvaI	CCWGG	2 cut(s)	144, 609
NdeII	GATC	5 cut(s)	32, 338, 382, 604, 682
NlaIV	GGNNCC	2 cut(s)	12, 459
NmuCI	GTSAC	1 cut(s)	544
NsiI	ATGCAT	1 cut(s)	235
PceI	AGGCCT	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	3 cut(s)	162, 430, 433
PshBI	ATTAAT	1 cut(s)	713
Psp1406I	AACGTT	1 cut(s)	241
Psp6I	CCWGG	2 cut(s)	142, 607
PspFI	CCCAGC	1 cut(s)	100
PspGI	CCWGG	2 cut(s)	142, 607
PspN4I	GGNNCC	2 cut(s)	12, 459
PstNI	CAGNNNCTG	1 cut(s)	428
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SaqAI	TTAA	2 cut(s)	377, 713
SatI	GCNGC	3 cut(s)	161, 429, 432
Sau3AI	GATC	5 cut(s)	32, 338, 382, 604, 682
ScrFI	CCNGG	2 cut(s)	144, 609
SduI	GDGCHC	1 cut(s)	372
SfaNI	GCATC	2 cut(s)	494, 664
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	7 cut(s)	130, 173, 261, 378, 441, 710, 714
SseBI	AGGCCT	1 cut(s)	142
SspMI	CTAG	1 cut(s)	332
StuI	AGGCCT	1 cut(s)	142
StyD4I	CCNGG	2 cut(s)	142, 607
StyI	CCWWGG	2 cut(s)	331, 504
TaaI	ACNGT	4 cut(s)	94, 195, 327, 424
TaiI	ACGT	3 cut(s)	244, 353, 551
TasI	AATT	7 cut(s)	130, 173, 261, 378, 441, 710, 714
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	377, 713
Tru9I	TTAA	2 cut(s)	377, 713
TscAI	CASTG	1 cut(s)	549
TseFI	GTSAC	1 cut(s)	544
TseI	GCWGC	3 cut(s)	160, 428, 431
Tsp45I	GTSAC	1 cut(s)	544
TspDTI	ATGAA	4 cut(s)	336, 420, 561, 616
TspRI	CASTG	1 cut(s)	549
VspI	ATTAAT	1 cut(s)	713
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XmaJI	CCTAGG	1 cut(s)	331
XspI	CTAG	1 cut(s)	332
ZraI	GACGTC	1 cut(s)	549
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.