Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006814

Physical Location & Seq

Genomic Coordinates Reverse (-)

50288324 .. 50290535

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1206600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCATCTCTACAATGCATGGCTGCCGCCACCGGTGGCCGAGGAGTCGAAGAAAGAGAAGGAGTCCTTCTCCTGGGTCGTCTCCTCCGTCAAGAACTCGTACAAACCCGACGACCCTGAATCCGTCTATGCTACTCTCAAATGGGTTTCTGTTATCGACCTTTTCGTCAAGGCGAAAAGTGAAGTATCCTTGGAAGATGTAACTGCCCTTGTTGAATTTGGATTGGAATTGTTTTATGTATCGCAAAATAAGCTTTATGCCCAGGTTAGATGGGGAAACATCCTAGTCAAACTACTCAATAAGCATCGAAAGAAGTTGTCTTTGAAATTAAAATGGCGGCCTTTGTACGATACATTGATCCATACACATTTCACTAGGAATACAGGTCCAGAAGGCTGGAGATTGAGACAACGGCATTTTGAGGCTACTACTTCTCTAGTTCGGTCCTGCCGGAAGTTCTTCCCACCAGGTTCTGCCTTTGAGATATGGTCCGAGTTTAGATCTTTATTGGAAAATCCCTGGCATAATTCATCCTTTGAGGGATCCGGGTTTGTTAGACTGTTTCTTCCTACAAACTTGGACAACCAGGACTTCTTCTCGCACGATTGGATTAAAGAGTTTTTCCGCCTCTGGGACTCGATACCGAATTGCCAATTTTGGAAACAGTCAATGGGCGGCTGTTATAGCTCGTGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005839 GO:0006508 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010498 GO:0010499 GO:0010604 GO:0010952 GO:0016504 GO:0019222 GO:0019538 GO:0030162 GO:0030163 GO:0030234 GO:0031323 GO:0031325 GO:0032268 GO:0032270 GO:0032991 GO:0042393 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051603 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070577 GO:0070628 GO:0071704 GO:0080090 GO:0098772 GO:0140030 GO:0140033 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

BLM10_mid DUF3437

Protein Analysis

233

Amino Acids

27.33

Weight (kDa)

8.89

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13330
fragaria_vesca	FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830
malus_domestica	MD00G1206400.v1.1 MD00G1206500.v1.1 MD00G1206600.v1.1 MD03G1040600.v1.1 MD11G1042000.v1.1
prunus_persica	Prupe.6G032900_v2.0.a1
pyrus_communis	pycom03g03130 pycom11g03610
rosa_chinensis	RchiOBHm_Chr5g0075021
rosa_laevigata	RLG00000036518
rosa_multiflora	Rmu_sc0006984.1_g000002
rosa_rugosa	Rorug05G0435500
rosa_samantha	Rh5AG492800 Rh5BG514100 Rh5CG537700 Rh5DG526400
rosa_wichuraiana	Rw5G045680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AciI	CCGC	4 cut(s)	26, 337, 625, 675
AclWI	GGATC	3 cut(s)	352, 537, 550
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	215
AfaI	GTAC	2 cut(s)	101, 347
AfiI	CCNNNNNNNGG	2 cut(s)	72, 631
AgeI	ACCGGT	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	215, 325
AjnI	CCWGG	5 cut(s)	71, 261, 466, 518, 585
AluBI	AGCT	2 cut(s)	253, 687
AluI	AGCT	2 cut(s)	253, 687
Alw26I	GTCTC	2 cut(s)	85, 400
AlwI	GGATC	3 cut(s)	352, 537, 550
AlwNI	CAGNNNCTG	1 cut(s)	473
AoxI	GGCC	2 cut(s)	36, 338
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	215
AsiGI	ACCGGT	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	458
AspS9I	GGNCC	3 cut(s)	386, 444, 489
AsuC2I	CCSGG	1 cut(s)	547
AvaII	GGWCC	3 cut(s)	386, 444, 489
BamHI	GGATCC	1 cut(s)	542
BauI	CACGAG	1 cut(s)	688
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	1 cut(s)	264
BceAI	ACGGC	1 cut(s)	428
BciT130I	CCWGG	5 cut(s)	73, 263, 468, 520, 587
BciVI	GTATCC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	547
BcoDI	GTCTC	2 cut(s)	85, 400
BfaI	CTAG	3 cut(s)	284, 375, 437
BfuI	GTATCC	1 cut(s)	196
BglII	AGATCT	1 cut(s)	500
BisI	GCNGC	4 cut(s)	23, 26, 338, 676
BlsI	GCNGC	4 cut(s)	24, 27, 339, 677
Bme1390I	CCNGG	6 cut(s)	73, 263, 468, 520, 547, 587
Bme18I	GGWCC	3 cut(s)	386, 444, 489
BmgT120I	GGNCC	3 cut(s)	386, 444, 489
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	6 cut(s)	73, 263, 468, 520, 547, 587
BmsI	GCATC	2 cut(s)	13, 313
BplI	GAGNNNNNCTC	2 cut(s)	53, 85
BpmI	CTGGAG	1 cut(s)	418
BpuMI	CCSGG	1 cut(s)	547
BsaJI	CCNNGG	5 cut(s)	39, 72, 189, 261, 518
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 631
Bse118I	RCCGGY	1 cut(s)	31
BseBI	CCWGG	5 cut(s)	73, 263, 468, 520, 587
BseDI	CCNNGG	5 cut(s)	39, 72, 189, 261, 518
BseGI	GGATG	2 cut(s)	279, 530
BseLI	CCNNNNNNNGG	2 cut(s)	72, 631
BseRI	GAGGAG	2 cut(s)	56, 73
BseXI	GCAGC	1 cut(s)	9
BshFI	GGCC	2 cut(s)	38, 340
BshTI	ACCGGT	1 cut(s)	31
BsiSI	CCGG	3 cut(s)	32, 451, 546
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	2 cut(s)	72, 631
BsmAI	GTCTC	2 cut(s)	85, 400
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	647
BsnI	GGCC	2 cut(s)	38, 340
Bsp143I	GATC	3 cut(s)	357, 500, 542
BspACI	CCGC	4 cut(s)	26, 337, 625, 675
BspANI	GGCC	2 cut(s)	38, 340
BspLI	GGNNCC	1 cut(s)	544
BspPI	GGATC	3 cut(s)	352, 537, 550
BsrFI	RCCGGY	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	5 cut(s)	39, 72, 189, 261, 518
BssMI	GATC	3 cut(s)	357, 500, 542
BssSI	CACGAG	1 cut(s)	688
BssT1I	CCWWGG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	688
Bst2UI	CCWGG	5 cut(s)	73, 263, 468, 520, 587
Bst4CI	ACNGT	2 cut(s)	561, 666
BstF5I	GGATG	2 cut(s)	279, 530
BstKTI	GATC	3 cut(s)	360, 503, 545
BstMAI	GTCTC	2 cut(s)	85, 400
BstMBI	GATC	3 cut(s)	357, 500, 542
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 684
BstNI	CCWGG	5 cut(s)	73, 263, 468, 520, 587
BstSCI	CCNGG	6 cut(s)	71, 261, 466, 518, 545, 585
BstV1I	GCAGC	1 cut(s)	9
BstX2I	RGATCY	2 cut(s)	500, 542
BstXI	CCANNNNNNTGG	1 cut(s)	396
BstYI	RGATCY	2 cut(s)	500, 542
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	38, 340
BtsCI	GGATG	2 cut(s)	279, 530
CaiI	CAGNNNCTG	1 cut(s)	473
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	3 cut(s)	386, 444, 489
CsiI	ACCWGGT	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	100, 346
CspAI	ACCGGT	1 cut(s)	31
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	8 cut(s)	22, 38, 253, 340, 396, 425, 678, 687
CviKI_1	RGCY	8 cut(s)	22, 38, 253, 340, 396, 425, 678, 687
CviQI	GTAC	2 cut(s)	100, 346
DpnI	GATC	3 cut(s)	359, 502, 544
DpnII	GATC	3 cut(s)	357, 500, 542
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	614
Eco130I	CCWWGG	1 cut(s)	189
Eco47I	GGWCC	3 cut(s)	386, 444, 489
EcoRII	CCWGG	5 cut(s)	71, 261, 466, 518, 585
EcoT14I	CCWWGG	1 cut(s)	189
EcoT22I	ATGCAT	2 cut(s)	6, 19
ErhI	CCWWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	1 cut(s)	21
FaiI	YATR	8 cut(s)	19, 129, 237, 258, 363, 487, 525, 684
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	1 cut(s)	17
Fnu4HI	GCNGC	4 cut(s)	23, 26, 338, 676
FokI	GGATG	2 cut(s)	266, 517
Fsp4HI	GCNGC	4 cut(s)	23, 26, 338, 676
FspBI	CTAG	3 cut(s)	284, 375, 437
GluI	GCNGC	4 cut(s)	23, 26, 338, 676
GsuI	CTGGAG	1 cut(s)	418
HaeIII	GGCC	2 cut(s)	38, 340
HapII	CCGG	3 cut(s)	32, 451, 546
Hin1II	CATG	1 cut(s)	21
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	4 cut(s)	44, 62, 119, 635
HpaII	CCGG	3 cut(s)	32, 451, 546
Hpy188I	TCNGA	1 cut(s)	493
Hpy188III	TCNNGA	2 cut(s)	91, 389
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	3 cut(s)	52, 76, 386
HpyCH4III	ACNGT	2 cut(s)	561, 666
HpyCH4V	TGCA	2 cut(s)	4, 17
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 684
Hsp92II	CATG	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	357, 500, 542
Lsp1109I	GCAGC	1 cut(s)	9
LweI	GCATC	2 cut(s)	13, 313
MabI	ACCWGGT	1 cut(s)	466
MaeI	CTAG	3 cut(s)	284, 375, 437
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	3 cut(s)	359, 502, 544
MboI	GATC	3 cut(s)	357, 500, 542
MboII	GAAGA	5 cut(s)	61, 206, 451, 557, 586
MflI	RGATCY	2 cut(s)	500, 542
MluCI	AATT	6 cut(s)	215, 227, 326, 526, 646, 653
MlyI	GAGTC	3 cut(s)	53, 71, 629
MnlI	CCTC	5 cut(s)	34, 94, 415, 532, 638
Mph1103I	ATGCAT	2 cut(s)	6, 19
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	3 cut(s)	329, 612, 697
MspI	CCGG	3 cut(s)	32, 451, 546
MspR9I	CCNGG	6 cut(s)	73, 263, 468, 520, 547, 587
MvaI	CCWGG	5 cut(s)	73, 263, 468, 520, 587
MwoI	GCNNNNNNNGC	2 cut(s)	250, 684
NciI	CCSGG	1 cut(s)	547
NdeII	GATC	3 cut(s)	357, 500, 542
NlaIII	CATG	1 cut(s)	21
NlaIV	GGNNCC	1 cut(s)	544
NmeAIII	GCCGAG	1 cut(s)	64
NsiI	ATGCAT	2 cut(s)	6, 19
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 162
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	119
PinAI	ACCGGT	1 cut(s)	31
PkrI	GCNGC	4 cut(s)	24, 27, 339, 677
PleI	GAGTC	3 cut(s)	52, 70, 629
PpsI	GAGTC	3 cut(s)	52, 70, 629
Psp6I	CCWGG	5 cut(s)	71, 261, 466, 518, 585
PspGI	CCWGG	5 cut(s)	71, 261, 466, 518, 585
PspN4I	GGNNCC	1 cut(s)	544
PspPI	GGNCC	3 cut(s)	386, 444, 489
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	2 cut(s)	500, 542
RsaI	GTAC	2 cut(s)	101, 347
RsaNI	GTAC	2 cut(s)	100, 346
SaqAI	TTAA	3 cut(s)	329, 612, 697
SatI	GCNGC	4 cut(s)	23, 26, 338, 676
Sau3AI	GATC	3 cut(s)	357, 500, 542
Sau96I	GGNCC	3 cut(s)	386, 444, 489
SchI	GAGTC	3 cut(s)	53, 71, 629
ScrFI	CCNGG	6 cut(s)	73, 263, 468, 520, 547, 587
SetI	ASST	6 cut(s)	162, 255, 267, 388, 472, 689
SexAI	ACCWGGT	1 cut(s)	466
SfaNI	GCATC	2 cut(s)	13, 313
SgrAI	CRCCGGYG	1 cut(s)	31
SinI	GGWCC	3 cut(s)	386, 444, 489
Sse9I	AATT	6 cut(s)	215, 227, 326, 526, 646, 653
SsiI	CCGC	4 cut(s)	26, 337, 625, 675
SspMI	CTAG	3 cut(s)	284, 375, 437
StyD4I	CCNGG	6 cut(s)	71, 261, 466, 518, 545, 585
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	561, 666
TaqI	TCGA	4 cut(s)	47, 156, 307, 638
TaqII	GACCGA	1 cut(s)	432
TasI	AATT	6 cut(s)	215, 227, 326, 526, 646, 653
TauI	GCSGC	3 cut(s)	28, 340, 678
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	3 cut(s)	329, 612, 697
Tru9I	TTAA	3 cut(s)	329, 612, 697
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	519
TspGWI	ACGGA	2 cut(s)	76, 112
VpaK11BI	GGWCC	3 cut(s)	386, 444, 489
XapI	RAATTY	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	3 cut(s)	284, 375, 437
Zsp2I	ATGCAT	2 cut(s)	6, 19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.