Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006814

Physical Location & Seq

Genomic Coordinates Reverse (-)

60423831 .. 60426206

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0435500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCTTCTTCGATATTTGCAACCGATCGAGAGACGGGCCTACGGCGACCCAGACGCTTTGCTCGTCAGTTCTCTGCTAATCAGAGAATCGTAAAGCAATTAGATATGTATGGGGAATTAAAAGGGCATAACGATTATGTAAGCTCCATAGAATTCAACTCCACTGGTGACCTCCTTGTGTCAGGGTCTTATGATAAACAAGTCATATTTTGGAACTGGGAAACTAAAACTAGAAGACTCTCTTATGATTCTGGACACTTGAAGATGGTATATCAGACAAAGATAATGCCTCTCACGAATGATCAGAGAATAGTAACCGCTTGTGCAGTTGGTCAGTTTGATCTGCGAAGCAATACTGCTACGAAGCTATTCAGTTGCTCCAAATTGATAAGAGGAGAGCAGCATCCTTTCATGTTAGATTTGTATGACATGGTGATTGACCCATGGAATCCAAACTACTTTTGTCTAGGAGGCAATGATGCATATGCACGTGTCTATGACATGAGAAAATGCTGGCAGGATGCTTCAGGTGGTTTAGTTAAACCTGTGAACACATTTCGCCCTGCTCACCTGATTCAGACAACCCATTTTATGATCACAGGGAACGCTAAAGACATGGCGGAGCTTGACAAGCCAGAACAATTCGTTGGTCATAGAAATATAAACACATGTAGAGTGAGTTTCTTTGGGCCAAATGATGAGTATGTCTTGAGTGGGAGTTATTGCGGCCATATTTTCATATGGAAGAAGAATGGAGGTGAACTTATCCGTGTTATGATGGGCGATTCTCTAGGTGTACATGACATTCAGCCGCATCCACATAATCCGGTCATTGCCACCGGCGGATCGGGAAACAATCTAAAGCTCTGGGCTCCTATGGCAAATGATCATGCATCTCCACTGCCTGACAACATTACACAGGTGCTTTCTCAATCTCTCGCTGTCTCGCAGAGTAAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005839 GO:0006508 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010498 GO:0010499 GO:0010604 GO:0010952 GO:0016504 GO:0019222 GO:0019538 GO:0030162 GO:0030163 GO:0030234 GO:0031323 GO:0031325 GO:0032268 GO:0032270 GO:0032991 GO:0042393 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051603 GO:0052547 GO:0060255 GO:0061134 GO:0065007 GO:0065009 GO:0070577 GO:0070628 GO:0071704 GO:0080090 GO:0098772 GO:0140030 GO:0140033 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

BLM10_mid DUF3437

Protein Analysis

320

Amino Acids

36.19

Weight (kDa)

8.81

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	35 - 94	5.8e-10	WDR5 beta-propeller domain
WD40	PF00400	38 - 72	2.5e-08	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	39 - 107	8.8e-09	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	43 - 123	3.5e-08	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	213 - 290	5.3e-08	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13330
fragaria_vesca	FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830 FvH4_3g41830
malus_domestica	MD00G1206400.v1.1 MD00G1206500.v1.1 MD00G1206600.v1.1 MD03G1040600.v1.1 MD11G1042000.v1.1
prunus_persica	Prupe.6G032900_v2.0.a1
pyrus_communis	pycom03g03130 pycom11g03610
rosa_chinensis	RchiOBHm_Chr5g0075021
rosa_laevigata	RLG00000036518
rosa_multiflora	Rmu_sc0006984.1_g000002
rosa_rugosa	Rorug05G0435500
rosa_samantha	Rh5AG492800 Rh5BG514100 Rh5CG537700 Rh5DG526400
rosa_wichuraiana	Rw5G045680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	318, 620, 726, 812, 843
AclWI	GGATC	1 cut(s)	853
AcoI	YGGCCR	1 cut(s)	727
AcsI	RAATTY	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	510
AcvI	CACGTG	1 cut(s)	491
AfaI	GTAC	1 cut(s)	798
AflIII	ACRYGT	2 cut(s)	490, 668
AgsI	TTSAA	2 cut(s)	157, 262
AjuI	GAANNNNNNNTTGG	2 cut(s)	630, 662
AluBI	AGCT	4 cut(s)	144, 367, 625, 865
AluI	AGCT	4 cut(s)	144, 367, 625, 865
Alw26I	GTCTC	2 cut(s)	26, 949
AlwI	GGATC	1 cut(s)	853
AoxI	GGCC	3 cut(s)	37, 689, 727
ApeKI	GCWGC	1 cut(s)	400
ApoI	RAATTY	1 cut(s)	152
Asp700I	GAANNNNTTC	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	37, 689
AsuHPI	GGTGA	4 cut(s)	179, 445, 560, 770
BanII	GRGCYC	1 cut(s)	874
BbrPI	CACGTG	1 cut(s)	491
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	2 cut(s)	259, 772
BceAI	ACGGC	1 cut(s)	59
BclI	TGATCA	3 cut(s)	301, 594, 886
BcoDI	GTCTC	2 cut(s)	26, 949
BfaI	CTAG	3 cut(s)	231, 467, 791
BisI	GCNGC	3 cut(s)	401, 727, 812
BlsI	GCNGC	3 cut(s)	402, 728, 813
BmgT120I	GGNCC	2 cut(s)	37, 689
BmiI	GGNNCC	1 cut(s)	873
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	5 cut(s)	412, 469, 511, 823, 902
BmuI	ACTGGG	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	730
BsaAI	YACGTR	1 cut(s)	491
BsaJI	CCNNGG	1 cut(s)	443
BsaWI	WCCGGW	1 cut(s)	826
Bse118I	RCCGGY	1 cut(s)	839
Bse1I	ACTGG	2 cut(s)	169, 221
Bse3DI	GCAATG	2 cut(s)	481, 831
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	3 cut(s)	403, 526, 814
BseMI	GCAATG	2 cut(s)	481, 831
BseNI	ACTGG	2 cut(s)	169, 221
BseRI	GAGGAG	1 cut(s)	408
BseXI	GCAGC	1 cut(s)	412
BsgI	GTGCAG	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	28
BshFI	GGCC	3 cut(s)	39, 691, 729
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	827, 840
BsmAI	GTCTC	2 cut(s)	26, 949
BsmBI	CGTCTC	1 cut(s)	26
BsnI	GGCC	3 cut(s)	39, 691, 729
Bsp1286I	GDGCHC	1 cut(s)	874
Bsp1407I	TGTACA	1 cut(s)	796
Bsp143I	GATC	6 cut(s)	25, 301, 340, 594, 845, 886
Bsp19I	CCATGG	1 cut(s)	443
BspACI	CCGC	5 cut(s)	318, 620, 726, 812, 843
BspANI	GGCC	3 cut(s)	39, 691, 729
BspLI	GGNNCC	1 cut(s)	873
BspPI	GGATC	1 cut(s)	853
BsrDI	GCAATG	2 cut(s)	481, 831
BsrFI	RCCGGY	1 cut(s)	839
BsrGI	TGTACA	1 cut(s)	796
BsrI	ACTGG	2 cut(s)	169, 221
BssAI	RCCGGY	1 cut(s)	839
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	6 cut(s)	25, 301, 340, 594, 845, 886
BssT1I	CCWWGG	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	796
BstBAI	YACGTR	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	515
BstDSI	CCRYGG	1 cut(s)	443
BstEII	GGTNACC	1 cut(s)	167
BstF5I	GGATG	3 cut(s)	403, 526, 814
BstKTI	GATC	6 cut(s)	28, 304, 343, 597, 848, 889
BstMAI	GTCTC	2 cut(s)	26, 949
BstMBI	GATC	6 cut(s)	25, 301, 340, 594, 845, 886
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	631, 878
BstNSI	RCATGY	1 cut(s)	672
BstPI	GGTNACC	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	39, 691, 729
BtgI	CCRYGG	1 cut(s)	443
BtsCI	GGATG	3 cut(s)	403, 526, 814
BtsI	GCAGTG	1 cut(s)	899
BtsIMutI	CAGTG	2 cut(s)	162, 899
Cac8I	GCNNGC	1 cut(s)	515
Cfr10I	RCCGGY	1 cut(s)	839
Cfr13I	GGNCC	2 cut(s)	37, 689
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	797
CviAII	CATG	8 cut(s)	412, 430, 444, 502, 616, 669, 800, 890
CviQI	GTAC	1 cut(s)	797
DpnI	GATC	6 cut(s)	27, 303, 342, 596, 847, 888
DpnII	GATC	6 cut(s)	25, 301, 340, 594, 845, 886
EaeI	YGGCCR	1 cut(s)	727
EciI	GGCGGA	2 cut(s)	635, 858
Eco130I	CCWWGG	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	874
Eco57I	CTGAAG	1 cut(s)	510
Eco72I	CACGTG	1 cut(s)	491
Eco91I	GGTNACC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	443
EcoT22I	ATGCAT	2 cut(s)	484, 895
EcoT38I	GRGCYC	1 cut(s)	874
ErhI	CCWWGG	1 cut(s)	443
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	8 cut(s)	415, 433, 447, 505, 619, 672, 803, 893
FalI	AAGNNNNNCTT	2 cut(s)	226, 258
FatI	CATG	8 cut(s)	411, 429, 443, 501, 615, 668, 799, 889
FauNDI	CATATG	2 cut(s)	484, 740
FbaI	TGATCA	3 cut(s)	301, 594, 886
Fnu4HI	GCNGC	3 cut(s)	401, 727, 812
FokI	GGATG	3 cut(s)	390, 533, 801
FriOI	GRGCYC	1 cut(s)	874
Fsp4HI	GCNGC	3 cut(s)	401, 727, 812
FspBI	CTAG	3 cut(s)	231, 467, 791
GluI	GCNGC	3 cut(s)	401, 727, 812
HaeIII	GGCC	3 cut(s)	39, 691, 729
HapII	CCGG	2 cut(s)	827, 840
HgaI	GACGC	1 cut(s)	63
Hin1II	CATG	8 cut(s)	415, 433, 447, 505, 619, 672, 803, 893
HinfI	GANTC	6 cut(s)	87, 237, 248, 448, 574, 785
HpaII	CCGG	2 cut(s)	827, 840
HphI	GGTGA	4 cut(s)	179, 445, 560, 770
Hpy166II	GTNNAC	3 cut(s)	550, 761, 797
Hpy188I	TCNGA	4 cut(s)	84, 276, 306, 579
Hpy188III	TCNNGA	5 cut(s)	29, 252, 295, 709, 849
Hpy8I	GTNNAC	3 cut(s)	550, 761, 797
HpyCH4IV	ACGT	1 cut(s)	490
HpyCH4V	TGCA	5 cut(s)	20, 326, 482, 488, 893
HpyF10VI	GCNNNNNNNGC	2 cut(s)	631, 878
HpySE526I	ACGT	1 cut(s)	490
Hsp92II	CATG	8 cut(s)	415, 433, 447, 505, 619, 672, 803, 893
Ksp22I	TGATCA	3 cut(s)	301, 594, 886
Kzo9I	GATC	6 cut(s)	25, 301, 340, 594, 845, 886
LmnI	GCTCC	4 cut(s)	149, 383, 622, 877
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	5 cut(s)	412, 469, 511, 823, 902
MaeI	CTAG	3 cut(s)	231, 467, 791
MaeII	ACGT	1 cut(s)	490
MaeIII	GTNAC	2 cut(s)	167, 313
MalI	GATC	6 cut(s)	27, 303, 342, 596, 847, 888
MboI	GATC	6 cut(s)	25, 301, 340, 594, 845, 886
MboII	GAAGA	4 cut(s)	246, 274, 757, 760
MhlI	GDGCHC	1 cut(s)	874
MluCI	AATT	5 cut(s)	98, 116, 152, 383, 641
MlyI	GAGTC	1 cut(s)	231
MnlI	CCTC	5 cut(s)	182, 300, 386, 464, 749
Mph1103I	ATGCAT	2 cut(s)	484, 895
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	2 cut(s)	119, 540
MspI	CCGG	2 cut(s)	827, 840
MwoI	GCNNNNNNNGC	2 cut(s)	631, 878
NcoI	CCATGG	1 cut(s)	443
NdeI	CATATG	2 cut(s)	484, 740
NdeII	GATC	6 cut(s)	25, 301, 340, 594, 845, 886
NlaIII	CATG	8 cut(s)	415, 433, 447, 505, 619, 672, 803, 893
NlaIV	GGNNCC	1 cut(s)	873
NmuCI	GTSAC	1 cut(s)	167
NsiI	ATGCAT	2 cut(s)	484, 895
NspI	RCATGY	1 cut(s)	672
PciI	ACATGT	1 cut(s)	668
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	5 cut(s)	87, 248, 448, 574, 785
PkrI	GCNGC	3 cut(s)	402, 728, 813
Ple19I	CGATCG	1 cut(s)	28
PleI	GAGTC	1 cut(s)	231
PmaCI	CACGTG	1 cut(s)	491
PmlI	CACGTG	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	231
Ppu21I	YACGTR	1 cut(s)	491
PscI	ACATGT	1 cut(s)	668
PspCI	CACGTG	1 cut(s)	491
PspEI	GGTNACC	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	873
PspPI	GGNCC	2 cut(s)	37, 689
PvuI	CGATCG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	798
RsaNI	GTAC	1 cut(s)	797
SaqAI	TTAA	2 cut(s)	119, 540
SatI	GCNGC	3 cut(s)	401, 727, 812
Sau3AI	GATC	6 cut(s)	25, 301, 340, 594, 845, 886
Sau96I	GGNCC	2 cut(s)	37, 689
SchI	GAGTC	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	874
SfaNI	GCATC	5 cut(s)	412, 469, 511, 823, 902
SgrAI	CRCCGGYG	1 cut(s)	839
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
Sse9I	AATT	5 cut(s)	98, 116, 152, 383, 641
SsiI	CCGC	5 cut(s)	318, 620, 726, 812, 843
SspMI	CTAG	3 cut(s)	231, 467, 791
StyI	CCWWGG	1 cut(s)	443
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	2 cut(s)	11, 28
TasI	AATT	5 cut(s)	98, 116, 152, 383, 641
TatI	WGTACW	1 cut(s)	796
TauI	GCSGC	2 cut(s)	729, 814
TfiI	GAWTC	5 cut(s)	87, 248, 448, 574, 785
Tru1I	TTAA	2 cut(s)	119, 540
Tru9I	TTAA	2 cut(s)	119, 540
TscAI	CASTG	2 cut(s)	169, 906
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	400
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	400, 727
TspGWI	ACGGA	1 cut(s)	758
TspRI	CASTG	2 cut(s)	169, 906
XapI	RAATTY	1 cut(s)	152
XceI	RCATGY	1 cut(s)	672
XmnI	GAANNNNTTC	1 cut(s)	368
XspI	CTAG	3 cut(s)	231, 467, 791
Zsp2I	ATGCAT	2 cut(s)	484, 895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.