FvH4_3g42010

DNA damage-inducible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007459
Physical Location & Seq
Forward (+)
35143751 .. 35148650
4900 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42010.t3

Sequence Viewer

Length: 1230 bp
ATGAAGATCACAGTAATGACCGCCGACGAGCAGTTCATCTCCTTAGACGTCGATCCTCACGAGACTGTTGAAAACGTGAAAGCTCTCCTGGAAGTGGAGACCGGGGTGCTGCTTCAGAATCAGCAGCTTCTGTATAATGGGATGGAAGTTAGAAATTCTGAGAAACTTAGTGCGATCGGTGTGAAAGATGATGACATGATCATGATGGTATCCAATGCCGTGTCTCGTGCTTCCAGCAATGCACTGAGCTTAAATCCAGATGGGTCTGCTGTAAATCCAGGGGCTTTCCAGCTGCAGATTAGGAATGATTCTAATGCAATGTCACAGTTGTTTCAGAGTAATCCTGAATTAGCACAAGTTATTCTTGGAGATGATCTGAACAGACTGCAGGAAGTTTTACGTCAGCTTCACCGCCAAAATTCTGAACAGCGACGACAACTTGAGGAGGAGAATGCTCTTCTTTTTGCAGACCCTTTTGATGTTGAAGCCCAGAAGAAGATTGAAGCTGCTATTCGCCAGAAAGGAATTGATGAGAATTGGGCTGCTGCTTTAGAACATAACCCCGAAGCTTTTGGGAGGGTGGTTATGCTGTATGTTGACATGGAAGTTAATGGTGTCCCCTTGAAGGCATTTGTTGACAGTGGAGCACAGTCAACGATTATATCAAAATCCTGTGCTGAGCGTTGCGGATTGTTGAGGCTTTTAGATCAACGTTACAAGGGTATTGCTCATGGAGTTGGTCAATCAGAGATATTGGGTCGAATACACGTAGCTCCTATTAAGATTGGGAATAATTTTTACCCCTGCTCCTTCCTGGTACTGGATGCTTCAAATATAGAGTTCCTCTTTGGGTTGGATATGCTCCGAAAGCATCAGTGCAGTATAGACTTGAAGGATAATGTGTTGAGAGTTGGTGGGGGAGAAGTCTCTGTGCCATTTTTACAAGAAAAAGACTTGCCATCTCGATTTCTGGATGAAGAAAGGATGTCCAAGGAAGCATCCAGCTCAGGAGCTCCTGTGATATCTGGAACAACAGATAAGAGCAAAGATGTATCAACTGGAGGGCAATCATCTGGGACTGCTCATCCTAACACAAGTCAGAGACCTGATTTTGAAGCCAAAATTGCAAAGCTTGTTGAGCTAGGGTTTGGGAGAGATGCAGTGATACAAGCTCTTCAACTTTTTAATGGCAATGAAGAACAAGCCGCATCGTTTCTCTTCAGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease UBA ubiquitin

Protein Analysis

410

Amino Acids

44.86

Weight (kDa)

4.89

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 69 1.2e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 70 1.7e-12 Ubiquitin family
Asp_protease PF09668 188 - 296 6.9e-49 Aspartyl protease
gag-asp_proteas PF13975 199 - 290 5e-18 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 199 - 286 4.6e-12 Aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
AciI CCGC 4 cut(s) 21, 412, 687, 1206
AclI AACGTT 1 cut(s) 712
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 2 cut(s) 154, 418
AcuI CTGAAG 2 cut(s) 98, 1204
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 1 cut(s) 819
AfiI CCNNNNNNNGG 3 cut(s) 94, 625, 820
AflIII ACRYGT 1 cut(s) 766
AgsI TTSAA 8 cut(s) 71, 485, 503, 625, 831, 892, 1115, 1178
AjnI CCWGG 3 cut(s) 87, 277, 813
Alw21I GWGCWC 2 cut(s) 649, 1015
Alw26I GTCTC 5 cut(s) 56, 92, 228, 931, 1096
AlwI GGATC 1 cut(s) 47
AlwNI CAGNNNCTG 2 cut(s) 130, 1227
ApeKI GCWGC 6 cut(s) 109, 124, 292, 506, 542, 545
ApoI RAATTY 2 cut(s) 154, 418
AsuC2I CCSGG 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 401
BanII GRGCYC 1 cut(s) 1015
BauI CACGAG 2 cut(s) 59, 225
Bbv12I GWGCWC 2 cut(s) 649, 1015
BbvI GCAGC 6 cut(s) 96, 136, 279, 493, 529, 532
BccI CCATC 4 cut(s) 136, 199, 254, 967
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 3 cut(s) 89, 279, 815
BciVI GTATCC 1 cut(s) 220
BclI TGATCA 1 cut(s) 198
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 5 cut(s) 56, 92, 228, 931, 1096
BfaI CTAG 1 cut(s) 1142
BfmI CTRYAG 2 cut(s) 293, 386
BfuI GTATCC 1 cut(s) 220
BisI GCNGC 7 cut(s) 110, 125, 293, 507, 543, 546, 1206
BlpI GCTNAGC 1 cut(s) 678
BlsI GCNGC 7 cut(s) 111, 126, 294, 508, 544, 547, 1207
Bme1390I CCNGG 4 cut(s) 89, 103, 279, 815
BmrFI CCNGG 4 cut(s) 89, 103, 279, 815
BmsI GCATC 5 cut(s) 814, 880, 1007, 1147, 1217
BpmI CTGGAG 1 cut(s) 1080
Bpu10I CCTNAGC 1 cut(s) 1006
Bpu1102I GCTNAGC 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 103
BsaAI YACGTR 1 cut(s) 769
BsaHI GRCGYC 1 cut(s) 48
BsaI GGTCTC 2 cut(s) 92, 1096
BsaJI CCNNGG 3 cut(s) 102, 278, 990
BsaXI ACNNNNNCTCC 4 cut(s) 791, 821, 1002, 1032
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 625, 820
Bse1I ACTGG 2 cut(s) 825, 1063
Bse3DI GCAATG 3 cut(s) 244, 324, 1198
BseBI CCWGG 3 cut(s) 89, 279, 815
BseDI CCNNGG 3 cut(s) 102, 278, 990
BseGI GGATG 6 cut(s) 147, 829, 979, 990, 998, 1084
BseLI CCNNNNNNNGG 3 cut(s) 94, 625, 820
BseMI GCAATG 3 cut(s) 244, 324, 1198
BseMII CTCAG 4 cut(s) 150, 236, 669, 1020
BseNI ACTGG 2 cut(s) 825, 1063
BseRI GAGGAG 2 cut(s) 458, 461
BseXI GCAGC 6 cut(s) 96, 136, 279, 493, 529, 532
BsgI GTGCAG 1 cut(s) 898
Bsh1285I CGRYCG 1 cut(s) 177
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 2 cut(s) 649, 1015
BsiSI CCGG 1 cut(s) 102
BslFI GGGAC 2 cut(s) 602, 1090
BslI CCNNNNNNNGG 3 cut(s) 94, 625, 820
BsmAI GTCTC 5 cut(s) 56, 92, 228, 931, 1096
BsmFI GGGAC 2 cut(s) 602, 1090
BsmI GAATGC 1 cut(s) 457
Bso31I GGTCTC 2 cut(s) 92, 1096
Bsp1286I GDGCHC 2 cut(s) 649, 1015
Bsp143I GATC 6 cut(s) 6, 52, 174, 198, 373, 706
Bsp1720I GCTNAGC 1 cut(s) 678
BspACI CCGC 4 cut(s) 21, 412, 687, 1206
BspCNI CTCAG 4 cut(s) 151, 237, 670, 1019
BspHI TCATGA 1 cut(s) 201
BspMAI CTGCAG 2 cut(s) 297, 390
BspPI GGATC 1 cut(s) 47
BspQI GCTCTTC 2 cut(s) 462, 1179
BspTNI GGTCTC 2 cut(s) 92, 1096
BsrDI GCAATG 3 cut(s) 244, 324, 1198
BsrI ACTGG 2 cut(s) 825, 1063
BssECI CCNNGG 3 cut(s) 102, 278, 990
BssMI GATC 6 cut(s) 6, 52, 174, 198, 373, 706
BssNI GRCGYC 1 cut(s) 48
BssSI CACGAG 2 cut(s) 59, 225
BssT1I CCWWGG 1 cut(s) 990
Bst2BI CACGAG 2 cut(s) 59, 225
Bst2UI CCWGG 3 cut(s) 89, 279, 815
Bst4CI ACNGT 5 cut(s) 13, 67, 327, 641, 651
Bst6I CTCTTC 3 cut(s) 462, 1179, 1223
BstACI GRCGYC 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 769
BstDEI CTNAG 6 cut(s) 43, 159, 167, 245, 678, 1006
BstF5I GGATG 6 cut(s) 147, 829, 979, 990, 998, 1084
BstKTI GATC 6 cut(s) 9, 55, 177, 201, 376, 709
BstMAI GTCTC 5 cut(s) 56, 92, 228, 931, 1096
BstMBI GATC 6 cut(s) 6, 52, 174, 198, 373, 706
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 3 cut(s) 868, 1124, 1138
BstNI CCWGG 3 cut(s) 89, 279, 815
BstSCI CCNGG 4 cut(s) 87, 101, 277, 813
BstSFI CTRYAG 2 cut(s) 293, 386
BstV1I GCAGC 6 cut(s) 96, 136, 279, 493, 529, 532
BsuI GTATCC 1 cut(s) 220
BtsCI GGATG 6 cut(s) 147, 829, 979, 990, 998, 1084
BtsI GCAGTG 1 cut(s) 1167
BtsIMutI CAGTG 5 cut(s) 242, 646, 881, 1167, 1228
CaiI CAGNNNCTG 2 cut(s) 130, 1227
CciI TCATGA 1 cut(s) 201
Csp6I GTAC 1 cut(s) 818
CviAII CATG 4 cut(s) 196, 202, 601, 731
CviQI GTAC 1 cut(s) 818
DdeI CTNAG 6 cut(s) 43, 159, 167, 245, 678, 1006
DpnI GATC 6 cut(s) 8, 54, 176, 200, 375, 708
DpnII GATC 6 cut(s) 6, 52, 174, 198, 373, 706
Eam1104I CTCTTC 3 cut(s) 462, 1179, 1223
EarI CTCTTC 3 cut(s) 462, 1179, 1223
Ecl136II GAGCTC 1 cut(s) 1013
Eco130I CCWWGG 1 cut(s) 990
Eco24I GRGCYC 1 cut(s) 1015
Eco31I GGTCTC 2 cut(s) 92, 1096
Eco32I GATATC 1 cut(s) 1023
Eco53kI GAGCTC 1 cut(s) 1013
Eco57I CTGAAG 2 cut(s) 98, 1204
EcoICRI GAGCTC 1 cut(s) 1013
EcoRII CCWGG 3 cut(s) 87, 277, 813
EcoRV GATATC 1 cut(s) 1023
EcoT14I CCWWGG 1 cut(s) 990
EcoT38I GRGCYC 1 cut(s) 1015
ErhI CCWWGG 1 cut(s) 990
FaeI CATG 4 cut(s) 199, 205, 604, 734
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FaqI GGGAC 2 cut(s) 602, 1090
FatI CATG 4 cut(s) 195, 201, 600, 730
FbaI TGATCA 1 cut(s) 198
Fnu4HI GCNGC 7 cut(s) 110, 125, 293, 507, 543, 546, 1206
FokI GGATG 6 cut(s) 154, 836, 985, 986, 997, 1071
FriOI GRGCYC 1 cut(s) 1015
Fsp4HI GCNGC 7 cut(s) 110, 125, 293, 507, 543, 546, 1206
FspBI CTAG 1 cut(s) 1142
GluI GCNGC 7 cut(s) 110, 125, 293, 507, 543, 546, 1206
GsuI CTGGAG 1 cut(s) 1080
HapII CCGG 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 4 cut(s) 199, 205, 604, 734
HincII GTYRAC 3 cut(s) 598, 637, 654
HindII GTYRAC 3 cut(s) 598, 637, 654
HindIII AAGCTT 2 cut(s) 567, 1130
HinfI GANTC 2 cut(s) 118, 308
HpaII CCGG 1 cut(s) 102
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 3 cut(s) 598, 637, 654
Hpy188I TCNGA 8 cut(s) 117, 160, 336, 378, 424, 748, 866, 1101
Hpy188III TCNNGA 8 cut(s) 59, 202, 257, 344, 963, 971, 1008, 1026
Hpy8I GTNNAC 3 cut(s) 598, 637, 654
Hpy99I CGWCG 3 cut(s) 29, 53, 435
HpyAV CCTTC 3 cut(s) 619, 820, 886
HpyCH4III ACNGT 5 cut(s) 13, 67, 327, 641, 651
HpyCH4IV ACGT 5 cut(s) 48, 75, 400, 712, 768
HpyCH4V TGCA 8 cut(s) 242, 295, 317, 388, 467, 879, 1127, 1160
HpyF10VI GCNNNNNNNGC 3 cut(s) 868, 1124, 1138
HpyF3I CTNAG 6 cut(s) 43, 159, 167, 245, 678, 1006
HpySE526I ACGT 5 cut(s) 48, 75, 400, 712, 768
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 4 cut(s) 199, 205, 604, 734
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 6 cut(s) 6, 52, 174, 198, 373, 706
LguI GCTCTTC 2 cut(s) 462, 1179
LmnI GCTCC 6 cut(s) 644, 778, 812, 867, 1010, 1018
Lsp1109I GCAGC 6 cut(s) 96, 136, 279, 493, 529, 532
LweI GCATC 5 cut(s) 814, 880, 1007, 1147, 1217
MaeI CTAG 1 cut(s) 1142
MaeII ACGT 5 cut(s) 48, 75, 400, 712, 768
MaeIII GTNAC 2 cut(s) 321, 713
MalI GATC 6 cut(s) 8, 54, 176, 200, 375, 708
MboI GATC 6 cut(s) 6, 52, 174, 198, 373, 706
MboII GAAGA 8 cut(s) 16, 449, 505, 508, 989, 1166, 1208, 1210
MhlI GDGCHC 2 cut(s) 649, 1015
MluCI AATT 7 cut(s) 154, 347, 418, 525, 535, 793, 1122
MmeI TCCRAC 1 cut(s) 834
MnlI CCTC 7 cut(s) 66, 436, 439, 570, 690, 854, 1055
MseI TTAA 4 cut(s) 251, 609, 780, 1185
MslI CAYNNNNRTG 2 cut(s) 14, 200
MspA1I CMGCKG 1 cut(s) 292
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 4 cut(s) 89, 103, 279, 815
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 3 cut(s) 89, 279, 815
MwoI GCNNNNNNNGC 3 cut(s) 868, 1124, 1138
NciI CCSGG 1 cut(s) 103
NdeII GATC 6 cut(s) 6, 52, 174, 198, 373, 706
NlaIII CATG 4 cut(s) 199, 205, 604, 734
NmuCI GTSAC 1 cut(s) 321
PagI TCATGA 1 cut(s) 201
PciSI GCTCTTC 2 cut(s) 462, 1179
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PctI GAATGC 1 cut(s) 457
PfeI GAWTC 2 cut(s) 118, 308
PfoI TCCNGGA 1 cut(s) 87
PkrI GCNGC 7 cut(s) 111, 126, 294, 508, 544, 547, 1207
Ple19I CGATCG 1 cut(s) 177
Ppu21I YACGTR 1 cut(s) 769
Psp124BI GAGCTC 1 cut(s) 1015
Psp1406I AACGTT 1 cut(s) 712
Psp6I CCWGG 3 cut(s) 87, 277, 813
PspGI CCWGG 3 cut(s) 87, 277, 813
PstI CTGCAG 2 cut(s) 297, 390
PstNI CAGNNNCTG 2 cut(s) 130, 1227
PvuI CGATCG 1 cut(s) 177
PvuII CAGCTG 1 cut(s) 292
RsaI GTAC 1 cut(s) 819
RsaNI GTAC 1 cut(s) 818
RseI CAYNNNNRTG 2 cut(s) 14, 200
SacI GAGCTC 1 cut(s) 1015
SapI GCTCTTC 2 cut(s) 462, 1179
SaqAI TTAA 4 cut(s) 251, 609, 780, 1185
SatI GCNGC 7 cut(s) 110, 125, 293, 507, 543, 546, 1206
Sau3AI GATC 6 cut(s) 6, 52, 174, 198, 373, 706
ScrFI CCNGG 4 cut(s) 89, 103, 279, 815
SduI GDGCHC 2 cut(s) 649, 1015
SfaNI GCATC 5 cut(s) 814, 880, 1007, 1147, 1217
SfcI CTRYAG 2 cut(s) 293, 386
SmiMI CAYNNNNRTG 2 cut(s) 14, 200
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 7 cut(s) 154, 347, 418, 525, 535, 793, 1122
SsiI CCGC 4 cut(s) 21, 412, 687, 1206
SspMI CTAG 1 cut(s) 1142
SstI GAGCTC 1 cut(s) 1015
StyD4I CCNGG 4 cut(s) 87, 101, 277, 813
StyI CCWWGG 1 cut(s) 990
TaaI ACNGT 5 cut(s) 13, 67, 327, 641, 651
TaiI ACGT 5 cut(s) 51, 78, 403, 715, 771
TaqI TCGA 3 cut(s) 51, 760, 964
TasI AATT 7 cut(s) 154, 347, 418, 525, 535, 793, 1122
TauI GCSGC 1 cut(s) 1208
TfiI GAWTC 2 cut(s) 118, 308
Tru1I TTAA 4 cut(s) 251, 609, 780, 1185
Tru9I TTAA 4 cut(s) 251, 609, 780, 1185
TscAI CASTG 5 cut(s) 249, 646, 881, 1167, 1228
TseFI GTSAC 1 cut(s) 321
TseI GCWGC 6 cut(s) 109, 124, 292, 506, 542, 545
Tsp45I GTSAC 1 cut(s) 321
TspDTI ATGAA 4 cut(s) 17, 25, 990, 1209
TspRI CASTG 5 cut(s) 249, 646, 881, 1167, 1228
XapI RAATTY 2 cut(s) 154, 418
XspI CTAG 1 cut(s) 1142
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.