RLG00000036538

DNA damage-inducible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0007459
Physical Location & Seq
Forward (+)
81690950 .. 81695178
4229 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036538

Sequence Viewer

Length: 1221 bp
ATGAAGATCACAGTAATGACCGCCGACGAGCAGATCATCAGCTTAGACGTCGATCCTCATGAGACTGTTGAAAACGTGAAAGCTCTGCTGGAGGTGGAGACTCGGGTGCTGCTTCAGAATCAGCAGCTGCTGTATAATGGGAAGGAGGTTAGAAATTCCGAGAGACTGAGTGCGCTCGGTGTCAAAGATGATGATTTAATAATGATGGTATCCAATGCCGTGTCTAGCAATGCACCGACCTTCAATCCAGATGGGTCTGCTGCAAATCCACTAGCTTTCCAGCAGCAGATTAGGAATGATTCTAATGTGATAGCACAGTTGTTTCAGAGTGATCCTGAATTAGCACAAGTTATTCTTGGAGACGATCTCAATAGACTGCAGGAAGTTTTACGAGAGCGTCATCGCCAAAGATCTGAACATCGACGACAACAAGAGGAGGAGAATGCTCTTCTTTTTGCAGACCCTTTTGATGTTGAAGCCCAGAAGAAGATTGAAGCTGCTATTCGCCAGAAAGGAATTGATGAAAATTGGGCTGCTGCTCTTGAACATAACCCGGAAGCTTTTGCAAGGGTGGTTATGCTGTATGTAGACATGGAAGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCACAGTCAACAATTATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGTTGAGGCTTTTAGATCAACGTTACAAGGGCATTGCTCATGGAGTTGGTCAATCAGAGATATTGGGTCGAATACACGTAGCTCCTATCAAGATTGGAAATAATTTTTACCCCTGCTCCTTCCTGGTACTGGATGCTACCAATATAGAGTTCCTCTTTGGGTTGGATATGCTTCGAAAGCATCAGTGCAGTATAGACTTGAAGGATAATGTGTTGAGAGTTGGTGGGGGAGAAGTCTCTGTCCCATTTTTACAAGAAAAAGACTTGCCATCTCGGTTTCTGGATGAAGGAAAGTTGCTCCAGGAAGCATCCAGCTCAAGAGCTCCTGTGATAGCTGGAACAACAGATAAGACCAAAAATGTATCAACTGGAGGGCAATCATCTGGAAGTGCTCGTCCTGATACAAGTCAGGGACCTGATTTCGAAGCTAAAGTTGCAAAGCTAGTTGAGCTAGGGTTTGGGAGAGATGCAGTAATACAAGCTCTTAAATTTTTTGATGGCAATGAAGAACAAGCCGCAGGGTTTCTCTTCGGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease UBA ubiquitin

Protein Analysis

407

Amino Acids

44.7

Weight (kDa)

5.0

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 69 1.5e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 70 3.5e-13 Ubiquitin family
Ddi2_HDD PF24669 89 - 156 2e-06 Ddi2 HDD domain
Asp_protease PF09668 185 - 293 9.4e-49 Aspartyl protease
gag-asp_proteas PF13975 196 - 287 7.6e-18 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 196 - 283 6.4e-12 Aspartyl protease
UBA PF00627 369 - 401 2.7e-08 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 588
AciI CCGC 2 cut(s) 21, 1197
AclI AACGTT 1 cut(s) 703
AclWI GGATC 2 cut(s) 47, 326
AcsI RAATTY 2 cut(s) 154, 1169
AcuI CTGAAG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 1 cut(s) 810
AfiI CCNNNNNNNGG 2 cut(s) 616, 811
AflIII ACRYGT 1 cut(s) 757
AgsI TTSAA 7 cut(s) 71, 244, 476, 494, 545, 616, 883
AjnI CCWGG 2 cut(s) 804, 981
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
Alw21I GWGCWC 3 cut(s) 640, 1006, 1075
Alw26I GTCTC 5 cut(s) 56, 92, 157, 354, 922
AlwI GGATC 2 cut(s) 47, 326
AlwNI CAGNNNCTG 2 cut(s) 127, 130
Ama87I CYCGRG 1 cut(s) 102
ApeKI GCWGC 8 cut(s) 109, 124, 127, 260, 283, 497, 533, 536
ApoI RAATTY 2 cut(s) 154, 1169
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 1094
AsuC2I CCSGG 1 cut(s) 554
AsuII TTCGAA 2 cut(s) 856, 1104
AvaI CYCGRG 1 cut(s) 102
AvaII GGWCC 1 cut(s) 1094
BanII GRGCYC 1 cut(s) 1006
Bbv12I GWGCWC 3 cut(s) 640, 1006, 1075
BbvI GCAGC 8 cut(s) 96, 114, 136, 247, 295, 484, 520, 523
BccI CCATC 4 cut(s) 199, 245, 958, 1172
BceAI ACGGC 1 cut(s) 203
BciT130I CCWGG 2 cut(s) 806, 983
BciVI GTATCC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 554
BcoDI GTCTC 5 cut(s) 56, 92, 157, 354, 922
BfaI CTAG 4 cut(s) 225, 272, 1124, 1133
BfmI CTRYAG 1 cut(s) 377
BfuI GTATCC 1 cut(s) 220
BglII AGATCT 1 cut(s) 410
BisI GCNGC 9 cut(s) 110, 125, 128, 261, 284, 498, 534, 537, 1197
BlpI GCTNAGC 1 cut(s) 669
BlsI GCNGC 9 cut(s) 111, 126, 129, 262, 285, 499, 535, 538, 1198
Bme1390I CCNGG 3 cut(s) 554, 806, 983
Bme18I GGWCC 1 cut(s) 1094
BmeT110I CYCGRG 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 1094
BmiI GGNNCC 1 cut(s) 1095
BmrFI CCNGG 3 cut(s) 554, 806, 983
BmsI GCATC 4 cut(s) 805, 871, 998, 1138
BplI GAGNNNNNCTC 2 cut(s) 351, 383
BpmI CTGGAG 3 cut(s) 110, 965, 1071
Bpu1102I GCTNAGC 1 cut(s) 669
Bpu14I TTCGAA 2 cut(s) 856, 1104
BpuEI CTTGAG 1 cut(s) 982
BpuMI CCSGG 1 cut(s) 554
BsaAI YACGTR 1 cut(s) 760
BsaHI GRCGYC 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 782, 812
Bsc4I CCNNNNNNNGG 2 cut(s) 616, 811
Bse1I ACTGG 2 cut(s) 816, 1054
Bse3DI GCAATG 3 cut(s) 235, 714, 1189
BseBI CCWGG 2 cut(s) 806, 983
BseGI GGATG 3 cut(s) 820, 970, 989
BseLI CCNNNNNNNGG 2 cut(s) 616, 811
BseMI GCAATG 3 cut(s) 235, 714, 1189
BseMII CTCAG 2 cut(s) 158, 660
BseNI ACTGG 2 cut(s) 816, 1054
BseRI GAGGAG 2 cut(s) 449, 452
BseXI GCAGC 8 cut(s) 96, 114, 136, 247, 295, 484, 520, 523
BsgI GTGCAG 1 cut(s) 889
BsiHKAI GWGCWC 3 cut(s) 640, 1006, 1075
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 554
BslFI GGGAC 3 cut(s) 593, 908, 1107
BslI CCNNNNNNNGG 2 cut(s) 616, 811
BsmAI GTCTC 5 cut(s) 56, 92, 157, 354, 922
BsmBI CGTCTC 1 cut(s) 354
BsmFI GGGAC 3 cut(s) 593, 908, 1107
BsmI GAATGC 1 cut(s) 448
BsoBI CYCGRG 1 cut(s) 102
Bsp119I TTCGAA 2 cut(s) 856, 1104
Bsp1286I GDGCHC 3 cut(s) 640, 1006, 1075
Bsp143I GATC 7 cut(s) 6, 33, 52, 331, 364, 410, 697
Bsp1720I GCTNAGC 1 cut(s) 669
BspACI CCGC 2 cut(s) 21, 1197
BspCNI CTCAG 2 cut(s) 159, 661
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 1095
BspMAI CTGCAG 1 cut(s) 381
BspPI GGATC 2 cut(s) 47, 326
BspQI GCTCTTC 1 cut(s) 453
BspT104I TTCGAA 2 cut(s) 856, 1104
BsrDI GCAATG 3 cut(s) 235, 714, 1189
BsrI ACTGG 2 cut(s) 816, 1054
BssMI GATC 7 cut(s) 6, 33, 52, 331, 364, 410, 697
BssNI GRCGYC 1 cut(s) 48
Bst2UI CCWGG 2 cut(s) 806, 983
Bst4CI ACNGT 4 cut(s) 13, 67, 318, 642
Bst6I CTCTTC 2 cut(s) 453, 1214
BstACI GRCGYC 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 760
BstBI TTCGAA 2 cut(s) 856, 1104
BstDEI CTNAG 3 cut(s) 43, 167, 669
BstF5I GGATG 3 cut(s) 820, 970, 989
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 7 cut(s) 9, 36, 55, 334, 367, 413, 700
BstMAI GTCTC 5 cut(s) 56, 92, 157, 354, 922
BstMBI GATC 7 cut(s) 6, 33, 52, 331, 364, 410, 697
BstMWI GCNNNNNNNGC 3 cut(s) 859, 1115, 1129
BstNI CCWGG 2 cut(s) 806, 983
BstSCI CCNGG 3 cut(s) 552, 804, 981
BstSFI CTRYAG 1 cut(s) 377
BstV1I GCAGC 8 cut(s) 96, 114, 136, 247, 295, 484, 520, 523
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
BsuI GTATCC 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 386
BtsCI GGATG 3 cut(s) 820, 970, 989
BtsIMutI CAGTG 1 cut(s) 872
CaiI CAGNNNCTG 2 cut(s) 127, 130
CciI TCATGA 1 cut(s) 58
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 1094
CseI GACGC 1 cut(s) 386
Csp6I GTAC 1 cut(s) 809
CviAII CATG 3 cut(s) 59, 592, 722
CviQI GTAC 1 cut(s) 809
DdeI CTNAG 3 cut(s) 43, 167, 669
DpnI GATC 7 cut(s) 8, 35, 54, 333, 366, 412, 699
DpnII GATC 7 cut(s) 6, 33, 52, 331, 364, 410, 697
Eam1104I CTCTTC 2 cut(s) 453, 1214
EarI CTCTTC 2 cut(s) 453, 1214
Ecl136II GAGCTC 1 cut(s) 1004
Eco24I GRGCYC 1 cut(s) 1006
Eco47I GGWCC 1 cut(s) 1094
Eco53kI GAGCTC 1 cut(s) 1004
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 1004
EcoO109I RGGNCCY 1 cut(s) 1094
EcoRII CCWGG 2 cut(s) 804, 981
EcoT38I GRGCYC 1 cut(s) 1006
Esp3I CGTCTC 1 cut(s) 354
FaeI CATG 3 cut(s) 62, 595, 725
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 3 cut(s) 593, 908, 1107
FatI CATG 3 cut(s) 58, 591, 721
FblI GTMKAC 1 cut(s) 588
Fnu4HI GCNGC 9 cut(s) 110, 125, 128, 261, 284, 498, 534, 537, 1197
FokI GGATG 3 cut(s) 827, 976, 977
FriOI GRGCYC 1 cut(s) 1006
Fsp4HI GCNGC 9 cut(s) 110, 125, 128, 261, 284, 498, 534, 537, 1197
FspBI CTAG 4 cut(s) 225, 272, 1124, 1133
GlaI GCGC 1 cut(s) 174
GluI GCNGC 9 cut(s) 110, 125, 128, 261, 284, 498, 534, 537, 1197
GsuI CTGGAG 3 cut(s) 110, 965, 1071
HapII CCGG 1 cut(s) 554
HgaI GACGC 1 cut(s) 386
HhaI GCGC 1 cut(s) 175
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 3 cut(s) 62, 595, 725
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HindIII AAGCTT 1 cut(s) 558
HinfI GANTC 3 cut(s) 100, 118, 299
HpaII CCGG 1 cut(s) 554
Hpy166II GTNNAC 2 cut(s) 589, 645
Hpy188I TCNGA 5 cut(s) 117, 160, 327, 415, 739
Hpy188III TCNNGA 9 cut(s) 59, 248, 335, 542, 772, 962, 999, 1065, 1079
Hpy8I GTNNAC 2 cut(s) 589, 645
Hpy99I CGWCG 3 cut(s) 29, 53, 426
HpyAV CCTTC 6 cut(s) 136, 250, 610, 811, 877, 962
HpyCH4III ACNGT 4 cut(s) 13, 67, 318, 642
HpyCH4IV ACGT 4 cut(s) 48, 75, 703, 759
HpyCH4V TGCA 8 cut(s) 233, 263, 379, 458, 566, 870, 1118, 1151
HpyF10VI GCNNNNNNNGC 3 cut(s) 859, 1115, 1129
HpyF3I CTNAG 3 cut(s) 43, 167, 669
HpySE526I ACGT 4 cut(s) 48, 75, 703, 759
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 3 cut(s) 62, 595, 725
HspAI GCGC 1 cut(s) 173
Kzo9I GATC 7 cut(s) 6, 33, 52, 331, 364, 410, 697
LguI GCTCTTC 1 cut(s) 453
LmnI GCTCC 5 cut(s) 635, 769, 803, 984, 1009
Lsp1109I GCAGC 8 cut(s) 96, 114, 136, 247, 295, 484, 520, 523
LweI GCATC 4 cut(s) 805, 871, 998, 1138
MaeI CTAG 4 cut(s) 225, 272, 1124, 1133
MaeII ACGT 4 cut(s) 48, 75, 703, 759
MaeIII GTNAC 1 cut(s) 704
MalI GATC 7 cut(s) 8, 35, 54, 333, 366, 412, 699
MboI GATC 7 cut(s) 6, 33, 52, 331, 364, 410, 697
MboII GAAGA 6 cut(s) 16, 440, 496, 499, 1199, 1201
MflI RGATCY 1 cut(s) 410
MhlI GDGCHC 3 cut(s) 640, 1006, 1075
MluCI AATT 7 cut(s) 154, 338, 516, 526, 648, 784, 1169
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 825
MnlI CCTC 8 cut(s) 66, 85, 139, 427, 430, 681, 845, 1046
MseI TTAA 3 cut(s) 197, 600, 1167
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 127
MspI CCGG 1 cut(s) 554
MspR9I CCNGG 3 cut(s) 554, 806, 983
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 2 cut(s) 806, 983
MwoI GCNNNNNNNGC 3 cut(s) 859, 1115, 1129
NciI CCSGG 1 cut(s) 554
NdeII GATC 7 cut(s) 6, 33, 52, 331, 364, 410, 697
NlaIII CATG 3 cut(s) 62, 595, 725
NlaIV GGNNCC 1 cut(s) 1095
NspV TTCGAA 2 cut(s) 856, 1104
PagI TCATGA 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 453
PctI GAATGC 1 cut(s) 448
PfeI GAWTC 2 cut(s) 118, 299
PfoI TCCNGGA 1 cut(s) 981
PkrI GCNGC 9 cut(s) 111, 126, 129, 262, 285, 499, 535, 538, 1198
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Ppu21I YACGTR 1 cut(s) 760
PpuMI RGGWCCY 1 cut(s) 1094
Psp124BI GAGCTC 1 cut(s) 1006
Psp1406I AACGTT 1 cut(s) 703
Psp5II RGGWCCY 1 cut(s) 1094
Psp6I CCWGG 2 cut(s) 804, 981
PspGI CCWGG 2 cut(s) 804, 981
PspN4I GGNNCC 1 cut(s) 1095
PspPI GGNCC 1 cut(s) 1094
PspPPI RGGWCCY 1 cut(s) 1094
PstI CTGCAG 1 cut(s) 381
PstNI CAGNNNCTG 2 cut(s) 127, 130
PsuI RGATCY 1 cut(s) 410
PvuII CAGCTG 1 cut(s) 127
RsaI GTAC 1 cut(s) 810
RsaNI GTAC 1 cut(s) 809
RseI CAYNNNNRTG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 1006
SapI GCTCTTC 1 cut(s) 453
SaqAI TTAA 3 cut(s) 197, 600, 1167
SatI GCNGC 9 cut(s) 110, 125, 128, 261, 284, 498, 534, 537, 1197
Sau3AI GATC 7 cut(s) 6, 33, 52, 331, 364, 410, 697
Sau96I GGNCC 1 cut(s) 1094
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 3 cut(s) 554, 806, 983
SduI GDGCHC 3 cut(s) 640, 1006, 1075
SfaNI GCATC 4 cut(s) 805, 871, 998, 1138
SfcI CTRYAG 1 cut(s) 377
SfuI TTCGAA 2 cut(s) 856, 1104
SinI GGWCC 1 cut(s) 1094
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 997
SmoI CTYRAG 1 cut(s) 997
Sse9I AATT 7 cut(s) 154, 338, 516, 526, 648, 784, 1169
SsiI CCGC 2 cut(s) 21, 1197
SspMI CTAG 4 cut(s) 225, 272, 1124, 1133
SstI GAGCTC 1 cut(s) 1006
StyD4I CCNGG 3 cut(s) 552, 804, 981
TaaI ACNGT 4 cut(s) 13, 67, 318, 642
TaiI ACGT 4 cut(s) 51, 78, 706, 762
TaqI TCGA 5 cut(s) 51, 421, 751, 856, 1104
TasI AATT 7 cut(s) 154, 338, 516, 526, 648, 784, 1169
TauI GCSGC 1 cut(s) 1199
TfiI GAWTC 2 cut(s) 118, 299
Tru1I TTAA 3 cut(s) 197, 600, 1167
Tru9I TTAA 3 cut(s) 197, 600, 1167
TscAI CASTG 1 cut(s) 872
TseI GCWGC 8 cut(s) 109, 124, 127, 260, 283, 497, 533, 536
TspDTI ATGAA 4 cut(s) 17, 537, 981, 1200
TspRI CASTG 1 cut(s) 872
VpaK11BI GGWCC 1 cut(s) 1094
XapI RAATTY 2 cut(s) 154, 1169
XmiI GTMKAC 1 cut(s) 588
XspI CTAG 4 cut(s) 225, 272, 1124, 1133
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.