Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007459

Physical Location & Seq

Genomic Coordinates Reverse (-)

2394250 .. 2395727

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g03050.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTGTGGGCATATACTACTAATCTATTGTATATATAATAATAGTAAAAGAATACTCCTTTCTTATAGAGAAAGCAAACAGAACGGAGCGTTTTGTCAACGAGTGCAACTAATTCGTATCACAGAAGATCCTTCTCTCCTTCTTGTCCAAGTGGGACAACAAGTCCAAACTCGTCAAACAAATCCTCCTACATATCCACAATCCCGAAGCTCCGATTCGATACAACCCACAATACAATCTCACAAAATCCTCACCAATCCACTCCGGAGATCCAATCGCATCGACGGATTGAAGAAGATGAAGATCACTGTGATGACCGCGGACGAACAGATCCTCTCCTTAGACGTCGATCCTCACGAGACTGTTGAGAATGTGAAAGCTCTGCTGGAAGTGGAGACGCGGGTGCTGCTTCAGCAGCAGCAGCTGCTATATAATGGGAGGGAGATGAGGAATTCTGAGAAGCTGAGTGCTCTTGGTGTTAGAGATGAAGACTTGATAATGATGGTGTCCAATGCCGCCTCGAGTGCACCGTCCACTGCCTTGAGCTTCAATCCAGATGGGTCTGCGGTAAACCCAGAAGCTTTCCAGCAGCACATTAGGAATGATTCTAATTTGACAGCACAGTTGTTTCAGAGTGACCCAGACTTGGCACAAGTTATTCTTGGAAATGATCGATCAATAGACTGCAGGAACTTTTGCGAGAGCGTCATCGCCAAAAATCTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp_protease UBA ubiquitin

Protein Analysis

243

Amino Acids

27.22

Weight (kDa)

6.43

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13235 AT3G13235 AT3G13235
fragaria_vesca	FvH4_3g42010 FvH4_3g42010 FvH4_3g42010 FvH4_3g42010 FvH4_3g42010
malus_domestica	MD03G1039600.v1.1 MD11G1040100.v1.1
prunus_persica	Prupe.6G031700_v2.0.a1
pyrus_communis	pycom03g03050 pycom06g15030 pycom11g03480 pycom12g07130
rosa_chinensis	RchiOBHm_Chr5g0075221
rosa_laevigata	RLG00000036538
rosa_roxburghii	Rroxscaffold_1G00006330
rosa_rugosa	Rorug05G0437400 Rorug05G0437400
rosa_samantha	Rh5AG494300 Rh5BG515700 Rh5CG539500 Rh5DG528500
rosa_wichuraiana	Rw5G045870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	348
AccII	CGCG	2 cut(s)	320, 400
AccIII	TCCGGA	1 cut(s)	264
AciI	CCGC	5 cut(s)	318, 320, 400, 516, 566
AclWI	GGATC	4 cut(s)	122, 264, 325, 344
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	345
AfiI	CCNNNNNNNGG	1 cut(s)	646
AgsI	TTSAA	2 cut(s)	292, 550
AhdI	GACNNNNNGTC	1 cut(s)	161
AluBI	AGCT	6 cut(s)	210, 380, 424, 463, 546, 581
AluI	AGCT	6 cut(s)	210, 380, 424, 463, 546, 581
Alw21I	GWGCWC	2 cut(s)	472, 529
Alw26I	GTCTC	2 cut(s)	353, 389
Alw44I	GTGCAC	1 cut(s)	525
AlwI	GGATC	4 cut(s)	122, 264, 325, 344
AlwNI	CAGNNNCTG	1 cut(s)	424
Ama87I	CYCGRG	1 cut(s)	520
Aor13HI	TCCGGA	1 cut(s)	264
ApaLI	GTGCAC	1 cut(s)	525
ApeKI	GCWGC	6 cut(s)	406, 415, 418, 421, 424, 589
ApoI	RAATTY	1 cut(s)	451
AsuHPI	GGTGA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	520
BaeGI	GKGCMC	1 cut(s)	529
BauI	CACGAG	1 cut(s)	356
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	2 cut(s)	472, 529
BbvI	GCAGC	6 cut(s)	393, 411, 427, 430, 433, 601
BccI	CCATC	2 cut(s)	496, 551
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BcoDI	GTCTC	2 cut(s)	353, 389
BfmI	CTRYAG	1 cut(s)	685
BisI	GCNGC	7 cut(s)	407, 416, 419, 422, 425, 516, 590
BlsI	GCNGC	7 cut(s)	408, 417, 420, 423, 426, 517, 591
BmeRI	GACNNNNNGTC	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	520
BmsI	GCATC	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	562
Bsa29I	ATCGAT	1 cut(s)	673
BsaBI	GATNNNNATC	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	646
Bse8I	GATNNNNATC	1 cut(s)	302
BseAI	TCCGGA	1 cut(s)	264
BseCI	ATCGAT	1 cut(s)	673
BseDI	CCNNGG	1 cut(s)	318
BseJI	GATNNNNATC	1 cut(s)	302
BseLI	CCNNNNNNNGG	1 cut(s)	646
BseMII	CTCAG	2 cut(s)	447, 455
BseSI	GKGCMC	1 cut(s)	529
BseXI	GCAGC	6 cut(s)	393, 411, 427, 430, 433, 601
Bsh1236I	CGCG	2 cut(s)	320, 400
BshVI	ATCGAT	1 cut(s)	673
BsiHKAI	GWGCWC	2 cut(s)	472, 529
BsiHKCI	CYCGRG	1 cut(s)	520
BsiSI	CCGG	1 cut(s)	265
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	646
BsmAI	GTCTC	2 cut(s)	353, 389
BsmBI	CGTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	168
BsoBI	CYCGRG	1 cut(s)	520
Bsp1286I	GDGCHC	2 cut(s)	472, 529
Bsp13I	TCCGGA	1 cut(s)	264
Bsp143I	GATC	7 cut(s)	127, 269, 303, 330, 349, 670, 674
BspACI	CCGC	5 cut(s)	318, 320, 400, 516, 566
BspCNI	CTCAG	2 cut(s)	448, 456
BspDI	ATCGAT	1 cut(s)	673
BspEI	TCCGGA	1 cut(s)	264
BspFNI	CGCG	2 cut(s)	320, 400
BspMAI	CTGCAG	1 cut(s)	689
BspPI	GGATC	4 cut(s)	122, 264, 325, 344
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	7 cut(s)	127, 269, 303, 330, 349, 670, 674
BssNI	GRCGYC	1 cut(s)	345
BssSI	CACGAG	1 cut(s)	356
Bst2BI	CACGAG	1 cut(s)	356
Bst4CI	ACNGT	4 cut(s)	310, 364, 531, 624
BstACI	GRCGYC	1 cut(s)	345
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstDEI	CTNAG	3 cut(s)	340, 456, 464
BstDSI	CCRYGG	1 cut(s)	318
BstFNI	CGCG	2 cut(s)	320, 400
BstKTI	GATC	7 cut(s)	130, 272, 306, 333, 352, 673, 677
BstMAI	GTCTC	2 cut(s)	353, 389
BstMBI	GATC	7 cut(s)	127, 269, 303, 330, 349, 670, 674
BstMWI	GCNNNNNNNGC	6 cut(s)	406, 412, 415, 421, 424, 524
BstSFI	CTRYAG	1 cut(s)	685
BstSLI	GKGCMC	1 cut(s)	529
BstUI	CGCG	2 cut(s)	320, 400
BstV1I	GCAGC	6 cut(s)	393, 411, 427, 430, 433, 601
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	3 cut(s)	127, 269, 330
BstYI	RGATCY	3 cut(s)	127, 269, 330
Bsu15I	ATCGAT	1 cut(s)	673
BsuTUI	ATCGAT	1 cut(s)	673
BtgI	CCRYGG	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	694
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	2 cut(s)	306, 534
CaiI	CAGNNNCTG	1 cut(s)	424
Cfr42I	CCGCGG	1 cut(s)	321
ClaI	ATCGAT	1 cut(s)	673
CseI	GACGC	2 cut(s)	406, 694
CviJI	RGCY	6 cut(s)	210, 380, 424, 463, 546, 581
CviKI_1	RGCY	6 cut(s)	210, 380, 424, 463, 546, 581
DdeI	CTNAG	3 cut(s)	340, 456, 464
DpnI	GATC	7 cut(s)	129, 271, 305, 332, 351, 672, 676
DpnII	GATC	7 cut(s)	127, 269, 303, 330, 349, 670, 674
DriI	GACNNNNNGTC	1 cut(s)	161
Eam1105I	GACNNNNNGTC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	520
EcoRI	GAATTC	1 cut(s)	451
Esp3I	CGTCTC	1 cut(s)	389
FaiI	YATR	9 cut(s)	12, 14, 32, 34, 36, 66, 193, 430, 432
FalI	AAGNNNNNCTT	2 cut(s)	645, 677
FaqI	GGGAC	1 cut(s)	168
FauI	CCCGC	1 cut(s)	393
Fnu4HI	GCNGC	7 cut(s)	407, 416, 419, 422, 425, 516, 590
Fsp4HI	GCNGC	7 cut(s)	407, 416, 419, 422, 425, 516, 590
GluI	GCNGC	7 cut(s)	407, 416, 419, 422, 425, 516, 590
HapII	CCGG	1 cut(s)	265
HgaI	GACGC	2 cut(s)	406, 694
Hin1I	GRCGYC	1 cut(s)	345
HincII	GTYRAC	1 cut(s)	98
HindII	GTYRAC	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	579
HinfI	GANTC	2 cut(s)	215, 605
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	4 cut(s)	98, 527, 534, 571
Hpy188I	TCNGA	4 cut(s)	214, 457, 633, 723
Hpy188III	TCNNGA	4 cut(s)	204, 265, 356, 554
Hpy8I	GTNNAC	4 cut(s)	98, 527, 534, 571
Hpy99I	CGWCG	2 cut(s)	287, 350
HpyAV	CCTTC	2 cut(s)	141, 149
HpyCH4III	ACNGT	4 cut(s)	310, 364, 531, 624
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	3 cut(s)	106, 527, 687
HpyF10VI	GCNNNNNNNGC	6 cut(s)	406, 412, 415, 421, 424, 524
HpyF3I	CTNAG	3 cut(s)	340, 456, 464
HpySE526I	ACGT	1 cut(s)	345
Hsp92I	GRCGYC	1 cut(s)	345
Kpn2I	TCCGGA	1 cut(s)	264
KspI	CCGCGG	1 cut(s)	321
Kzo9I	GATC	7 cut(s)	127, 269, 303, 330, 349, 670, 674
LmnI	GCTCC	2 cut(s)	86, 215
LpnPI	CCDG	7 cut(s)	278, 371, 567, 588, 599, 654, 673
Lsp1109I	GCAGC	6 cut(s)	393, 411, 427, 430, 433, 601
LweI	GCATC	1 cut(s)	288
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	7 cut(s)	129, 271, 305, 332, 351, 672, 676
MboI	GATC	7 cut(s)	127, 269, 303, 330, 349, 670, 674
MboII	GAAGA	5 cut(s)	137, 304, 307, 313, 500
MflI	RGATCY	3 cut(s)	127, 269, 330
MhlI	GDGCHC	2 cut(s)	472, 529
MluCI	AATT	3 cut(s)	111, 451, 610
MnlI	CCTC	7 cut(s)	195, 260, 344, 363, 432, 441, 529
MroI	TCCGGA	1 cut(s)	264
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	2 cut(s)	320, 424
MspI	CCGG	1 cut(s)	265
MvnI	CGCG	2 cut(s)	320, 400
MwoI	GCNNNNNNNGC	6 cut(s)	406, 412, 415, 421, 424, 524
NdeII	GATC	7 cut(s)	127, 269, 303, 330, 349, 670, 674
NmuCI	GTSAC	1 cut(s)	635
PaeR7I	CTCGAG	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 527
PfeI	GAWTC	2 cut(s)	215, 605
PkrI	GCNGC	7 cut(s)	408, 417, 420, 423, 426, 517, 591
PspXI	VCTCGAGB	1 cut(s)	520
PstI	CTGCAG	1 cut(s)	689
PstNI	CAGNNNCTG	1 cut(s)	424
PsuI	RGATCY	3 cut(s)	127, 269, 330
PvuII	CAGCTG	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	311
SacII	CCGCGG	1 cut(s)	321
SatI	GCNGC	7 cut(s)	407, 416, 419, 422, 425, 516, 590
Sau3AI	GATC	7 cut(s)	127, 269, 303, 330, 349, 670, 674
SduI	GDGCHC	2 cut(s)	472, 529
SetI	ASST	7 cut(s)	212, 348, 382, 426, 465, 548, 583
SfaNI	GCATC	1 cut(s)	288
SfcI	CTRYAG	1 cut(s)	685
Sfr274I	CTCGAG	1 cut(s)	520
Sfr303I	CCGCGG	1 cut(s)	321
SgrBI	CCGCGG	1 cut(s)	321
SlaI	CTCGAG	1 cut(s)	520
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	2 cut(s)	520, 541
SmoI	CTYRAG	2 cut(s)	520, 541
Sse9I	AATT	3 cut(s)	111, 451, 610
SsiI	CCGC	5 cut(s)	318, 320, 400, 516, 566
TaaI	ACNGT	4 cut(s)	310, 364, 531, 624
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	5 cut(s)	218, 282, 348, 521, 673
TasI	AATT	3 cut(s)	111, 451, 610
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	2 cut(s)	215, 605
TscAI	CASTG	2 cut(s)	313, 541
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	6 cut(s)	406, 415, 418, 421, 424, 589
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	2 cut(s)	314, 501
TspGWI	ACGGA	2 cut(s)	99, 300
TspRI	CASTG	2 cut(s)	313, 541
VneI	GTGCAC	1 cut(s)	525
XapI	RAATTY	1 cut(s)	451
XhoI	CTCGAG	1 cut(s)	520
ZraI	GACGTC	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.