Rh5CG539500

DNA damage-inducible protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0007459
Physical Location & Seq
Forward (+)
75413159 .. 75419834
6676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG539500.1

Sequence Viewer

Length: 1029 bp
ATGAAGATCACAGTAATGACCGCCGACGAGCAGATCATCAGCTTAGACGTCGATCCTCATGAGACTGTTGAAAACGTGAAAGCTCTGCTGGAGGTGGAGACTCGGGTGCTGCTTCAGAATCAGCAGCTGCTGTATAATGGGAAGGAGGTTAGAAATTCCGAGAGACTGAGTGCGCTCGGTGTCAAAGATGATGATTTAATAATGATGGTATCCAATGCCGTGTCTAGTGCTTCCAGCAATGCACTGAGCTTCAATCCAGATGGGTCTGCTACAAATCCACTAGCTTTCCAGCAGCAGATTAGGAATGATTCTAATGTGATAGCACAGTTGTTTCAGAGTGATCCTGAATTAGCACAAGTTATTCTTGGAGACGATCTCAATAGACTGCAGGAAGTTTTACGAGAGCGTTATCGCCAAAAATCTGAACATCGACGACAACAAGAGGAGGAGAATGCTCTTCTTTTTGCAGACCCTTTTGATGTTGAAGCCCAGAAGAAGATTGAAGCTGCTATTCGCCAGAAAGGAATTGATGAAAATTGGGCTGCTGCTCTTGAACATAACCCCGAAGCTTTTGCAAGGGTGGTTATGCTGTATGTAGACATGGAAGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCACAGTCAACAATTATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGTTGAGGCTTTTAGATCAACGTTACAAGGGCATTGCTCATGGAGTTGGTCAATCAGAGATATTAGGTCGAATACACGTAGCTCCTATCAAGATTGGAAATAATTTTTACCCCTGCTCCTTCCTGGTACTGGATGCTACTAATATAGAGTTCCTCTTTGGGTTGGATATGCTTCGAAAGCATCAGTGCAGTATAGACTTGAAGGATAATGTGTTGAGAGTTGGTGGGGGAGAAGTCTCTGTCCCATTTTTACAAGAAAAAGATTTGCCATCTCGGTTTCTGGATGAAGGAAAGTTGTTCCAGGAAGCATCCAGCTCAGGAGCTCCTGTAAGTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease UBA ubiquitin

Protein Analysis

342

Amino Acids

38.02

Weight (kDa)

4.93

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 69 1.1e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 70 2.6e-13 Ubiquitin family
Ddi2_HDD PF24669 92 - 159 2.5e-06 Ddi2 HDD domain
Asp_protease PF09668 188 - 296 6.7e-49 Aspartyl protease
gag-asp_proteas PF13975 199 - 290 5.6e-18 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 199 - 286 4.7e-12 Aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 597
AciI CCGC 1 cut(s) 21
AclI AACGTT 1 cut(s) 712
AclWI GGATC 2 cut(s) 47, 335
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 48
AfaI GTAC 2 cut(s) 819, 1024
AfiI CCNNNNNNNGG 2 cut(s) 625, 820
AflIII ACRYGT 1 cut(s) 766
AgsI TTSAA 7 cut(s) 71, 253, 485, 503, 554, 625, 892
AjnI CCWGG 2 cut(s) 813, 990
Alw21I GWGCWC 2 cut(s) 649, 1015
Alw26I GTCTC 5 cut(s) 56, 92, 157, 363, 931
AlwI GGATC 2 cut(s) 47, 335
AlwNI CAGNNNCTG 2 cut(s) 127, 130
Ama87I CYCGRG 1 cut(s) 102
ApeKI GCWGC 7 cut(s) 109, 124, 127, 292, 506, 542, 545
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 1 cut(s) 175
AsuII TTCGAA 1 cut(s) 865
AvaI CYCGRG 1 cut(s) 102
BanII GRGCYC 1 cut(s) 1015
Bbv12I GWGCWC 2 cut(s) 649, 1015
BbvI GCAGC 7 cut(s) 96, 114, 136, 304, 493, 529, 532
BccI CCATC 3 cut(s) 199, 254, 967
BceAI ACGGC 1 cut(s) 203
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BciT130I CCWGG 2 cut(s) 815, 992
BciVI GTATCC 1 cut(s) 220
BcoDI GTCTC 5 cut(s) 56, 92, 157, 363, 931
BfaI CTAG 2 cut(s) 225, 281
BfmI CTRYAG 1 cut(s) 386
BfuI GTATCC 1 cut(s) 220
BisI GCNGC 7 cut(s) 110, 125, 128, 293, 507, 543, 546
BlpI GCTNAGC 1 cut(s) 678
BlsI GCNGC 7 cut(s) 111, 126, 129, 294, 508, 544, 547
BmcAI AGTACT 1 cut(s) 1024
Bme1390I CCNGG 2 cut(s) 815, 992
BmeT110I CYCGRG 1 cut(s) 102
BmrFI CCNGG 2 cut(s) 815, 992
BmsI GCATC 3 cut(s) 814, 880, 1007
BplI GAGNNNNNCTC 2 cut(s) 360, 392
BpmI CTGGAG 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 1006
Bpu1102I GCTNAGC 1 cut(s) 678
Bpu14I TTCGAA 1 cut(s) 865
BsaAI YACGTR 1 cut(s) 769
BsaHI GRCGYC 1 cut(s) 48
BsaXI ACNNNNNCTCC 3 cut(s) 791, 821, 1002
Bsc4I CCNNNNNNNGG 2 cut(s) 625, 820
Bse1I ACTGG 1 cut(s) 825
Bse3DI GCAATG 2 cut(s) 244, 723
BseBI CCWGG 2 cut(s) 815, 992
BseGI GGATG 3 cut(s) 829, 979, 998
BseLI CCNNNNNNNGG 2 cut(s) 625, 820
BseMI GCAATG 2 cut(s) 244, 723
BseMII CTCAG 4 cut(s) 158, 236, 669, 1020
BseNI ACTGG 1 cut(s) 825
BseRI GAGGAG 2 cut(s) 458, 461
BseXI GCAGC 7 cut(s) 96, 114, 136, 304, 493, 529, 532
BsgI GTGCAG 1 cut(s) 898
BsiHKAI GWGCWC 2 cut(s) 649, 1015
BsiHKCI CYCGRG 1 cut(s) 102
BslFI GGGAC 2 cut(s) 602, 917
BslI CCNNNNNNNGG 2 cut(s) 625, 820
BsmAI GTCTC 5 cut(s) 56, 92, 157, 363, 931
BsmBI CGTCTC 1 cut(s) 363
BsmFI GGGAC 2 cut(s) 602, 917
BsmI GAATGC 1 cut(s) 457
BsoBI CYCGRG 1 cut(s) 102
Bsp119I TTCGAA 1 cut(s) 865
Bsp1286I GDGCHC 2 cut(s) 649, 1015
Bsp143I GATC 6 cut(s) 6, 33, 52, 340, 373, 706
Bsp1720I GCTNAGC 1 cut(s) 678
BspACI CCGC 1 cut(s) 21
BspCNI CTCAG 4 cut(s) 159, 237, 670, 1019
BspHI TCATGA 1 cut(s) 58
BspMAI CTGCAG 1 cut(s) 390
BspPI GGATC 2 cut(s) 47, 335
BspQI GCTCTTC 1 cut(s) 462
BspT104I TTCGAA 1 cut(s) 865
BsrDI GCAATG 2 cut(s) 244, 723
BsrI ACTGG 1 cut(s) 825
BssMI GATC 6 cut(s) 6, 33, 52, 340, 373, 706
BssNI GRCGYC 1 cut(s) 48
Bst2UI CCWGG 2 cut(s) 815, 992
Bst4CI ACNGT 4 cut(s) 13, 67, 327, 651
Bst6I CTCTTC 1 cut(s) 462
BstACI GRCGYC 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 769
BstBI TTCGAA 1 cut(s) 865
BstDEI CTNAG 6 cut(s) 43, 167, 245, 678, 1006, 1026
BstF5I GGATG 3 cut(s) 829, 979, 998
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 6 cut(s) 9, 36, 55, 343, 376, 709
BstMAI GTCTC 5 cut(s) 56, 92, 157, 363, 931
BstMBI GATC 6 cut(s) 6, 33, 52, 340, 373, 706
BstMWI GCNNNNNNNGC 1 cut(s) 868
BstNI CCWGG 2 cut(s) 815, 992
BstSCI CCNGG 2 cut(s) 813, 990
BstSFI CTRYAG 1 cut(s) 386
BstV1I GCAGC 7 cut(s) 96, 114, 136, 304, 493, 529, 532
BsuI GTATCC 1 cut(s) 220
BtsCI GGATG 3 cut(s) 829, 979, 998
BtsIMutI CAGTG 2 cut(s) 242, 881
CaiI CAGNNNCTG 2 cut(s) 127, 130
CciI TCATGA 1 cut(s) 58
CfoI GCGC 1 cut(s) 175
Csp6I GTAC 2 cut(s) 818, 1023
CviAII CATG 3 cut(s) 59, 601, 731
CviQI GTAC 2 cut(s) 818, 1023
DdeI CTNAG 6 cut(s) 43, 167, 245, 678, 1006, 1026
DpnI GATC 6 cut(s) 8, 35, 54, 342, 375, 708
DpnII GATC 6 cut(s) 6, 33, 52, 340, 373, 706
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
Ecl136II GAGCTC 1 cut(s) 1013
Eco24I GRGCYC 1 cut(s) 1015
Eco53kI GAGCTC 1 cut(s) 1013
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 1013
EcoRII CCWGG 2 cut(s) 813, 990
EcoT38I GRGCYC 1 cut(s) 1015
Esp3I CGTCTC 1 cut(s) 363
FaeI CATG 3 cut(s) 62, 604, 734
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FaqI GGGAC 2 cut(s) 602, 917
FatI CATG 3 cut(s) 58, 600, 730
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 7 cut(s) 110, 125, 128, 293, 507, 543, 546
FokI GGATG 3 cut(s) 836, 985, 986
FriOI GRGCYC 1 cut(s) 1015
Fsp4HI GCNGC 7 cut(s) 110, 125, 128, 293, 507, 543, 546
FspBI CTAG 2 cut(s) 225, 281
GlaI GCGC 1 cut(s) 174
GluI GCNGC 7 cut(s) 110, 125, 128, 293, 507, 543, 546
GsuI CTGGAG 1 cut(s) 110
HhaI GCGC 1 cut(s) 175
Hin1I GRCGYC 1 cut(s) 48
Hin1II CATG 3 cut(s) 62, 604, 734
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 1 cut(s) 654
HindII GTYRAC 1 cut(s) 654
HindIII AAGCTT 1 cut(s) 567
HinfI GANTC 3 cut(s) 100, 118, 308
Hpy166II GTNNAC 2 cut(s) 598, 654
Hpy188I TCNGA 5 cut(s) 117, 160, 336, 424, 748
Hpy188III TCNNGA 7 cut(s) 59, 257, 344, 551, 781, 971, 1008
Hpy8I GTNNAC 2 cut(s) 598, 654
Hpy99I CGWCG 3 cut(s) 29, 53, 435
HpyAV CCTTC 5 cut(s) 136, 619, 820, 886, 971
HpyCH4III ACNGT 4 cut(s) 13, 67, 327, 651
HpyCH4IV ACGT 4 cut(s) 48, 75, 712, 768
HpyCH4V TGCA 5 cut(s) 242, 388, 467, 575, 879
HpyF10VI GCNNNNNNNGC 1 cut(s) 868
HpyF3I CTNAG 6 cut(s) 43, 167, 245, 678, 1006, 1026
HpySE526I ACGT 4 cut(s) 48, 75, 712, 768
Hsp92I GRCGYC 1 cut(s) 48
Hsp92II CATG 3 cut(s) 62, 604, 734
HspAI GCGC 1 cut(s) 173
Kzo9I GATC 6 cut(s) 6, 33, 52, 340, 373, 706
LguI GCTCTTC 1 cut(s) 462
LmnI GCTCC 5 cut(s) 644, 778, 812, 1010, 1018
Lsp1109I GCAGC 7 cut(s) 96, 114, 136, 304, 493, 529, 532
LweI GCATC 3 cut(s) 814, 880, 1007
MaeI CTAG 2 cut(s) 225, 281
MaeII ACGT 4 cut(s) 48, 75, 712, 768
MaeIII GTNAC 1 cut(s) 713
MalI GATC 6 cut(s) 8, 35, 54, 342, 375, 708
MboI GATC 6 cut(s) 6, 33, 52, 340, 373, 706
MboII GAAGA 4 cut(s) 16, 449, 505, 508
MhlI GDGCHC 2 cut(s) 649, 1015
MluCI AATT 6 cut(s) 154, 347, 525, 535, 657, 793
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 834
MnlI CCTC 7 cut(s) 66, 85, 139, 436, 439, 690, 854
MseI TTAA 2 cut(s) 197, 609
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 127
MspR9I CCNGG 2 cut(s) 815, 992
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 2 cut(s) 815, 992
MwoI GCNNNNNNNGC 1 cut(s) 868
NdeII GATC 6 cut(s) 6, 33, 52, 340, 373, 706
NlaIII CATG 3 cut(s) 62, 604, 734
NspV TTCGAA 1 cut(s) 865
PagI TCATGA 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 462
PctI GAATGC 1 cut(s) 457
PfeI GAWTC 2 cut(s) 118, 308
PfoI TCCNGGA 1 cut(s) 990
PkrI GCNGC 7 cut(s) 111, 126, 129, 294, 508, 544, 547
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
Ppu21I YACGTR 1 cut(s) 769
Psp124BI GAGCTC 1 cut(s) 1015
Psp1406I AACGTT 1 cut(s) 712
Psp6I CCWGG 2 cut(s) 813, 990
PspGI CCWGG 2 cut(s) 813, 990
PstI CTGCAG 1 cut(s) 390
PstNI CAGNNNCTG 2 cut(s) 127, 130
PvuII CAGCTG 1 cut(s) 127
RsaI GTAC 2 cut(s) 819, 1024
RsaNI GTAC 2 cut(s) 818, 1023
RseI CAYNNNNRTG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 1015
SapI GCTCTTC 1 cut(s) 462
SaqAI TTAA 2 cut(s) 197, 609
SatI GCNGC 7 cut(s) 110, 125, 128, 293, 507, 543, 546
Sau3AI GATC 6 cut(s) 6, 33, 52, 340, 373, 706
ScaI AGTACT 1 cut(s) 1024
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 815, 992
SduI GDGCHC 2 cut(s) 649, 1015
SfaNI GCATC 3 cut(s) 814, 880, 1007
SfcI CTRYAG 1 cut(s) 386
SfuI TTCGAA 1 cut(s) 865
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 6 cut(s) 154, 347, 525, 535, 657, 793
SsiI CCGC 1 cut(s) 21
SspMI CTAG 2 cut(s) 225, 281
SstI GAGCTC 1 cut(s) 1015
StyD4I CCNGG 2 cut(s) 813, 990
TaaI ACNGT 4 cut(s) 13, 67, 327, 651
TaiI ACGT 4 cut(s) 51, 78, 715, 771
TaqI TCGA 4 cut(s) 51, 430, 760, 865
TasI AATT 6 cut(s) 154, 347, 525, 535, 657, 793
TatI WGTACW 1 cut(s) 1022
TfiI GAWTC 2 cut(s) 118, 308
Tru1I TTAA 2 cut(s) 197, 609
Tru9I TTAA 2 cut(s) 197, 609
TscAI CASTG 2 cut(s) 249, 881
TseI GCWGC 7 cut(s) 109, 124, 127, 292, 506, 542, 545
TspDTI ATGAA 3 cut(s) 17, 546, 990
TspRI CASTG 2 cut(s) 249, 881
XapI RAATTY 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 597
XspI CTAG 2 cut(s) 225, 281
ZraI GACGTC 1 cut(s) 49
ZrmI AGTACT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.