Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007459

Physical Location & Seq

Genomic Coordinates Reverse (-)

19621937 .. 19623530

Gene Structure 1594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15030.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAAGTCTTCAAACGTTTCTCAGGATCAATGCCACTTGGAAGGTGAGAGTGCTCGATTGCGACCAAATTTGGAAGCATGGCCTCTCACAAAATGGCCAGACTTGATCAAGCTTTTAGTTGATGGGCCAATCTGGAAGCGTATTCAACTGCTATTTCTTATTCGATTGTATTTGTGGTTTTCCGGGGACAAACAGATCCTCTCCTTAAACGTCGATCCTCACAAGATTGTCGAAAGTGTGAAAGATCTGCTGGAGGTGGAGAGGTCAGATGGGTCCCAAAAATGGCTAACTTTGCACTGTTCTTTTCAGCATTTTCTTTTGAGAAAAAACAAAGAGACCAGACAAACATTGACGACGACCGTTGAAGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

14.5

Weight (kDa)

8.62

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13235 AT3G13235 AT3G13235
fragaria_vesca	FvH4_3g42010 FvH4_3g42010 FvH4_3g42010 FvH4_3g42010 FvH4_3g42010
malus_domestica	MD03G1039600.v1.1 MD11G1040100.v1.1
prunus_persica	Prupe.6G031700_v2.0.a1
pyrus_communis	pycom03g03050 pycom06g15030 pycom11g03480 pycom12g07130
rosa_chinensis	RchiOBHm_Chr5g0075221
rosa_laevigata	RLG00000036538
rosa_roxburghii	Rroxscaffold_1G00006330
rosa_rugosa	Rorug05G0437400 Rorug05G0437400
rosa_samantha	Rh5AG494300 Rh5BG515700 Rh5CG539500 Rh5DG528500
rosa_wichuraiana	Rw5G045870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	15
AclWI	GGATC	3 cut(s)	33, 190, 209
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	12, 146, 365
AluBI	AGCT	2 cut(s)	112, 368
AluI	AGCT	2 cut(s)	112, 368
Alw21I	GWGCWC	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	3 cut(s)	33, 190, 209
AoxI	GGCC	3 cut(s)	80, 95, 125
ApoI	RAATTY	1 cut(s)	67
AspS9I	GGNCC	2 cut(s)	125, 273
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	55
BccI	CCATC	2 cut(s)	116, 263
BclI	TGATCA	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	329
BglII	AGATCT	1 cut(s)	244
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	125, 273
BmiI	GGNNCC	2 cut(s)	274, 275
BmrFI	CCNGG	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	184
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	3 cut(s)	82, 97, 127
BsiEI	CGRYCG	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	200, 259
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	2 cut(s)	200, 259
BsnI	GGCC	3 cut(s)	82, 97, 127
Bso31I	GGTCTC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	5 cut(s)	25, 105, 195, 214, 244
BspANI	GGCC	3 cut(s)	82, 97, 127
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	274, 275
BspPI	GGATC	3 cut(s)	33, 190, 209
BspTNI	GGTCTC	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	5 cut(s)	25, 105, 195, 214, 244
Bst4CI	ACNGT	2 cut(s)	299, 361
BstDEI	CTNAG	1 cut(s)	21
BstKTI	GATC	5 cut(s)	28, 108, 198, 217, 247
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	5 cut(s)	25, 105, 195, 214, 244
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	182
BstX2I	RGATCY	2 cut(s)	195, 244
BstYI	RGATCY	2 cut(s)	195, 244
BsuRI	GGCC	3 cut(s)	82, 97, 127
BtsIMutI	CAGTG	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	125, 273
CviAII	CATG	1 cut(s)	78
CviJI	RGCY	6 cut(s)	82, 97, 112, 127, 286, 368
CviKI_1	RGCY	6 cut(s)	82, 97, 112, 127, 286, 368
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	5 cut(s)	27, 107, 197, 216, 246
DpnII	GATC	5 cut(s)	25, 105, 195, 214, 244
EaeI	YGGCCR	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	273
FaeI	CATG	1 cut(s)	81
FaiI	YATR	1 cut(s)	79
FaqI	GGGAC	2 cut(s)	200, 259
FatI	CATG	1 cut(s)	77
FbaI	TGATCA	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	3 cut(s)	82, 97, 127
HapII	CCGG	1 cut(s)	183
Hin1II	CATG	1 cut(s)	81
HindIII	AAGCTT	2 cut(s)	110, 366
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	2 cut(s)	23, 133
Hpy99I	CGWCG	2 cut(s)	215, 358
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	2 cut(s)	299, 361
HpyCH4IV	ACGT	2 cut(s)	15, 210
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	2 cut(s)	15, 210
Hsp92II	CATG	1 cut(s)	81
KflI	GGGWCCC	1 cut(s)	273
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	5 cut(s)	25, 105, 195, 214, 244
LpnPI	CCDG	6 cut(s)	8, 111, 118, 196, 236, 352
MaeII	ACGT	2 cut(s)	15, 210
MalI	GATC	5 cut(s)	27, 107, 197, 216, 246
MboI	GATC	5 cut(s)	25, 105, 195, 214, 244
MflI	RGATCY	2 cut(s)	195, 244
MhlI	GDGCHC	1 cut(s)	55
MlsI	TGGCCA	1 cut(s)	97
MluCI	AATT	1 cut(s)	67
MluNI	TGGCCA	1 cut(s)	97
MnlI	CCTC	5 cut(s)	93, 209, 228, 247, 255
Mox20I	TGGCCA	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	97
MseI	TTAA	2 cut(s)	206, 373
Msp20I	TGGCCA	1 cut(s)	97
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	292
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	5 cut(s)	25, 105, 195, 214, 244
NlaIII	CATG	1 cut(s)	81
NlaIV	GGNNCC	2 cut(s)	274, 275
PpuMI	RGGWCCY	1 cut(s)	273
Psp1406I	AACGTT	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	274, 275
PspPI	GGNCC	2 cut(s)	125, 273
PspPPI	RGGWCCY	1 cut(s)	273
PsuI	RGATCY	2 cut(s)	195, 244
SaqAI	TTAA	2 cut(s)	206, 373
Sau3AI	GATC	5 cut(s)	25, 105, 195, 214, 244
Sau96I	GGNCC	2 cut(s)	125, 273
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	7 cut(s)	18, 46, 114, 213, 258, 266, 370
SinI	GGWCC	1 cut(s)	273
Sse9I	AATT	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	299, 361
TaiI	ACGT	2 cut(s)	18, 213
TaqI	TCGA	4 cut(s)	55, 163, 213, 231
TasI	AATT	1 cut(s)	67
Tru1I	TTAA	2 cut(s)	206, 373
Tru9I	TTAA	2 cut(s)	206, 373
TscAI	CASTG	1 cut(s)	302
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	302
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.