Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007812

Physical Location & Seq

Genomic Coordinates Reverse (-)

35247974 .. 35250270

Gene Structure 2297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g42200.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCAGAAGATGGCACAGGAATGGTTCTCCGGCGGCAGCAGCGGCGCCGGCGACGACTCGCTGAAGCCGGCGTCTTCTCTCCTAGCCGATTGGAACTCCTACGCCGCTTCCCAATCCGCCGAGGACAGCGCCTCCTTGGGCCTCGGCTTCGATCTCGAATCTGCGGTCCGCTCCGCAAACGACACCGTTTCGGGGACTTTCAGCGTGGTTTCCAAAGGAGTGAGAGATATACCTGGGAACCTCCAGTCTGCCACTAGTAGTGTTCCTTCAGGAAAAGCTCTCATGTATTTTGGGTTGTTTCTAGCAACTGGGGTGTTCTTTGTTTTTATCGCATTTACCATGTTCCTTCCGGTTATGGTATTGATGCCACAGAAGTTTGCTATCTGCTTTACACTTGGGTGTGCCTTTATTATTGGATCCTTCTTCGCACTCAAAGGTCCACAGAATCAGTTTGCTCACATGTCTTCAAAAGAGAGACTTCCTTTCACACTTGGATTTTTGGGCAGTATGGTTGGTACCATATATGTCTCGATGGTGCTTCACAGCTACATTCTCTCTGTGTTCTTCTCTGTATTACAGGTTCTGGCACTTGCATACTATGCTGTTTCATACTTTCCTGGTGGATCAGCCGGTTTGAAGTTCCTATCTTCCGCCCTTACATCCTCAGTAATGAAATGTTTTGGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031984 GO:0031985 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Got1

Protein Analysis

230

Amino Acids

24.34

Weight (kDa)

8.42

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Got1	PF04178	94 - 195	4.6e-24	Got1/Sft2-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26550 AT4G26550 AT5G56020 AT5G56020
fragaria_vesca	FvH4_3g42200 FvH4_3g42200
malus_domestica	MD03G1036800.v1.1 MD11G1038000.v1.1 MD17G1169900.v1.1
prunus_persica	Prupe.6G028800_v2.0.a1 Prupe.8G243900_v2.0.a1
pyrus_communis	pycom03g02820 pycom11g03200
rosa_chinensis	RchiOBHm_Chr5g0075471
rosa_laevigata	RLG00000036566
rosa_multiflora	Rmu_sc0000770.1_g000003 Rmu_sc0042482.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006030
rosa_rugosa	Rorug05G0439800
rosa_samantha	Rh5AG496900 Rh5BG518200 Rh5CG541700 Rh5DG531100
rosa_wichuraiana	Rw5G046090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	515
AccB1I	GGYRCC	2 cut(s)	44, 515
AccBSI	CCGCTC	1 cut(s)	171
AciI	CCGC	8 cut(s)	33, 42, 105, 117, 164, 169, 174, 651
AclWI	GGATC	3 cut(s)	411, 424, 631
AcuI	CTGAAG	2 cut(s)	83, 252
AcyI	GRCGYC	2 cut(s)	45, 71
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	1 cut(s)	192
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	2 cut(s)	468, 637
AhlI	ACTAGT	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	232, 616
AleI	CACNNNNGTG	1 cut(s)	397
AluBI	AGCT	2 cut(s)	278, 546
AluI	AGCT	2 cut(s)	278, 546
Alw26I	GTCTC	2 cut(s)	469, 532
AlwI	GGATC	3 cut(s)	411, 424, 631
AlwNI	CAGNNNCTG	1 cut(s)	583
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	36, 39
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
Asp718I	GGTACC	1 cut(s)	515
AspLEI	GCGC	2 cut(s)	47, 131
AspS9I	GGNCC	3 cut(s)	139, 166, 437
AvaII	GGWCC	2 cut(s)	166, 437
BamHI	GGATCC	1 cut(s)	416
BanI	GGYRCC	2 cut(s)	44, 515
BarI	GAAGNNNNNNTAC	2 cut(s)	250, 282
BbsI	GAAGAC	2 cut(s)	66, 456
BbvI	GCAGC	2 cut(s)	48, 51
BccI	CCATC	2 cut(s)	4, 526
BciT130I	CCWGG	2 cut(s)	234, 618
BcoDI	GTCTC	2 cut(s)	469, 532
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	3 cut(s)	83, 255, 302
BfoI	RGCGCY	2 cut(s)	48, 132
BisI	GCNGC	5 cut(s)	34, 37, 40, 43, 105
BlsI	GCNGC	5 cut(s)	35, 38, 41, 44, 106
Bme1390I	CCNGG	2 cut(s)	234, 618
Bme18I	GGWCC	2 cut(s)	166, 437
BmgT120I	GGNCC	3 cut(s)	139, 166, 437
BmiI	GGNNCC	4 cut(s)	46, 239, 418, 517
BmrFI	CCNGG	2 cut(s)	234, 618
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	318
BpiI	GAAGAC	2 cut(s)	66, 456
BpmI	CTGGAG	1 cut(s)	227
BsaHI	GRCGYC	2 cut(s)	45, 71
BsaJI	CCNNGG	4 cut(s)	120, 135, 142, 233
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse118I	RCCGGY	3 cut(s)	47, 67, 629
Bse1I	ACTGG	2 cut(s)	244, 313
BseBI	CCWGG	2 cut(s)	234, 618
BseDI	CCNNGG	4 cut(s)	120, 135, 142, 233
BseGI	GGATG	1 cut(s)	659
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	2 cut(s)	244, 313
BseXI	GCAGC	2 cut(s)	48, 51
BshFI	GGCC	1 cut(s)	141
BshNI	GGYRCC	2 cut(s)	44, 515
BsiSI	CCGG	5 cut(s)	30, 48, 68, 350, 630
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	2 cut(s)	469, 532
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	151, 416, 623
BspACI	CCGC	8 cut(s)	33, 42, 105, 117, 164, 169, 174, 651
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	677
BspLI	GGNNCC	4 cut(s)	46, 239, 418, 517
BspPI	GGATC	3 cut(s)	411, 424, 631
BspT107I	GGYRCC	2 cut(s)	44, 515
BsrBI	CCGCTC	1 cut(s)	171
BsrFI	RCCGGY	3 cut(s)	47, 67, 629
BsrI	ACTGG	2 cut(s)	244, 313
BssAI	RCCGGY	3 cut(s)	47, 67, 629
BssECI	CCNNGG	4 cut(s)	120, 135, 142, 233
BssMI	GATC	3 cut(s)	151, 416, 623
BssNI	GRCGYC	2 cut(s)	45, 71
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	2 cut(s)	234, 618
Bst4CI	ACNGT	1 cut(s)	187
BstACI	GRCGYC	2 cut(s)	45, 71
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstC8I	GCNNGC	2 cut(s)	49, 69
BstDEI	CTNAG	1 cut(s)	664
BstF5I	GGATG	1 cut(s)	659
BstH2I	RGCGCY	2 cut(s)	48, 132
BstHHI	GCGC	2 cut(s)	47, 131
BstKTI	GATC	3 cut(s)	154, 419, 626
BstMAI	GTCTC	2 cut(s)	469, 532
BstMBI	GATC	3 cut(s)	151, 416, 623
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 42, 48, 599
BstNI	CCWGG	2 cut(s)	234, 618
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	2 cut(s)	232, 616
BstV1I	GCAGC	2 cut(s)	48, 51
BstV2I	GAAGAC	2 cut(s)	66, 456
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	659
Cac8I	GCNNGC	2 cut(s)	49, 69
CaiI	CAGNNNCTG	1 cut(s)	583
CfoI	GCGC	2 cut(s)	47, 131
Cfr10I	RCCGGY	3 cut(s)	47, 67, 629
Cfr13I	GGNCC	3 cut(s)	139, 166, 437
CpoI	CGGWCCG	1 cut(s)	166
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	516
CspI	CGGWCCG	1 cut(s)	166
CviAII	CATG	3 cut(s)	283, 340, 460
CviJI	RGCY	7 cut(s)	67, 86, 141, 147, 278, 546, 629
CviKI_1	RGCY	7 cut(s)	67, 86, 141, 147, 278, 546, 629
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	1 cut(s)	664
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	3 cut(s)	153, 418, 625
DpnII	GATC	3 cut(s)	151, 416, 623
EciI	GGCGGA	2 cut(s)	106, 640
Eco130I	CCWWGG	1 cut(s)	135
Eco47I	GGWCC	2 cut(s)	166, 437
Eco57I	CTGAAG	2 cut(s)	83, 252
EcoRII	CCWGG	2 cut(s)	232, 616
EcoT14I	CCWWGG	1 cut(s)	135
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	3 cut(s)	286, 343, 463
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	3 cut(s)	282, 339, 459
Fnu4HI	GCNGC	5 cut(s)	34, 37, 40, 43, 105
FokI	GGATG	1 cut(s)	646
Fsp4HI	GCNGC	5 cut(s)	34, 37, 40, 43, 105
FspBI	CTAG	3 cut(s)	83, 255, 302
GlaI	GCGC	2 cut(s)	46, 130
GluI	GCNGC	5 cut(s)	34, 37, 40, 43, 105
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	2 cut(s)	48, 132
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	5 cut(s)	30, 48, 68, 350, 630
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	2 cut(s)	47, 131
Hin1I	GRCGYC	2 cut(s)	45, 71
Hin1II	CATG	3 cut(s)	286, 343, 463
Hin6I	GCGC	2 cut(s)	45, 129
HinP1I	GCGC	2 cut(s)	45, 129
HinfI	GANTC	3 cut(s)	56, 158, 445
HpaII	CCGG	5 cut(s)	30, 48, 68, 350, 630
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188III	TCNNGA	3 cut(s)	155, 270, 529
Hpy8I	GTNNAC	1 cut(s)	440
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	276, 356, 430
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	4, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 42, 48, 599
HpyF3I	CTNAG	1 cut(s)	664
Hsp92I	GRCGYC	2 cut(s)	45, 71
Hsp92II	CATG	3 cut(s)	286, 343, 463
HspAI	GCGC	2 cut(s)	45, 129
KasI	GGCGCC	1 cut(s)	44
KpnI	GGTACC	1 cut(s)	519
KroI	GCCGGC	2 cut(s)	47, 67
KroNI	GCCGGC	2 cut(s)	49, 69
Kzo9I	GATC	3 cut(s)	151, 416, 623
LmnI	GCTCC	1 cut(s)	176
Lsp1109I	GCAGC	2 cut(s)	48, 51
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	3 cut(s)	83, 255, 302
MalI	GATC	3 cut(s)	153, 418, 625
MbiI	CCGCTC	1 cut(s)	171
MboI	GATC	3 cut(s)	151, 416, 623
MboII	GAAGA	6 cut(s)	19, 66, 415, 456, 556, 639
MflI	RGATCY	1 cut(s)	416
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	6 cut(s)	115, 142, 152, 251, 673, 678
MreI	CGCCGGCG	1 cut(s)	47
MroNI	GCCGGC	2 cut(s)	47, 67
MslI	CAYNNNNRTG	2 cut(s)	19, 397
MspA1I	CMGCKG	1 cut(s)	42
MspI	CCGG	5 cut(s)	30, 48, 68, 350, 630
MspR9I	CCNGG	2 cut(s)	234, 618
MvaI	CCWGG	2 cut(s)	234, 618
MwoI	GCNNNNNNNGC	4 cut(s)	39, 42, 48, 599
NaeI	GCCGGC	2 cut(s)	49, 69
NarI	GGCGCC	1 cut(s)	45
NdeII	GATC	3 cut(s)	151, 416, 623
NgoMIV	GCCGGC	2 cut(s)	47, 67
NlaIII	CATG	3 cut(s)	286, 343, 463
NlaIV	GGNNCC	4 cut(s)	46, 239, 418, 517
NmeAIII	GCCGAG	2 cut(s)	123, 145
NspI	RCATGY	1 cut(s)	463
OliI	CACNNNNGTG	1 cut(s)	397
PciI	ACATGT	1 cut(s)	459
PdiI	GCCGGC	2 cut(s)	49, 69
PfeI	GAWTC	2 cut(s)	158, 445
PkrI	GCNGC	5 cut(s)	35, 38, 41, 44, 106
PleI	GAGTC	1 cut(s)	50
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	50
PscI	ACATGT	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	232, 616
PspGI	CCWGG	2 cut(s)	232, 616
PspN4I	GGNNCC	4 cut(s)	46, 239, 418, 517
PspPI	GGNCC	3 cut(s)	139, 166, 437
PsrI	GAACNNNNNNTAC	2 cut(s)	564, 596
PstNI	CAGNNNCTG	1 cut(s)	583
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
RseI	CAYNNNNRTG	2 cut(s)	19, 397
Rsr2I	CGGWCCG	1 cut(s)	166
RsrII	CGGWCCG	1 cut(s)	166
SatI	GCNGC	5 cut(s)	34, 37, 40, 43, 105
Sau3AI	GATC	3 cut(s)	151, 416, 623
Sau96I	GGNCC	3 cut(s)	139, 166, 437
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	234, 618
SetI	ASST	7 cut(s)	235, 243, 280, 439, 548, 582, 689
SfaNI	GCATC	1 cut(s)	354
SfoI	GGCGCC	1 cut(s)	46
SgrAI	CRCCGGYG	1 cut(s)	47
SinI	GGWCC	2 cut(s)	166, 437
SmiMI	CAYNNNNRTG	2 cut(s)	19, 397
SpeI	ACTAGT	1 cut(s)	254
SsiI	CCGC	8 cut(s)	33, 42, 105, 117, 164, 169, 174, 651
SspDI	GGCGCC	1 cut(s)	44
SspMI	CTAG	3 cut(s)	83, 255, 302
StyD4I	CCNGG	2 cut(s)	232, 616
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	3 cut(s)	150, 156, 530
TauI	GCSGC	3 cut(s)	36, 45, 107
TfiI	GAWTC	2 cut(s)	158, 445
TseI	GCWGC	2 cut(s)	36, 39
TspDTI	ATGAA	2 cut(s)	597, 686
VpaK11BI	GGWCC	2 cut(s)	166, 437
XceI	RCATGY	1 cut(s)	463
XspI	CTAG	3 cut(s)	83, 255, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.