Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007812

Physical Location & Seq

Genomic Coordinates Forward (+)

2238965 .. 2241862

Gene Structure 2898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G028800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCAAAAGATGGCACAGGAATGGTTTTCGCAGAGCGGTAGCGGCGCTGACGACTCGCAGAATACCTCGTCTTCCTTGTTAGCCGATTGGAACTCTTATGCCGCTTCACAATCTACAGATGAGAGCTCCTCCTTGGGCCTGGGCTTCGATCTCGAATCTGCGGTCCGTTCTGCTAACGATACCGTTTCAGGGACTTTCAGCGTGGTTTCCAAAGGAGTGAGAGATCTACCTGGGAACCTCCAATCTGCCACTAGCACTGTCCCTTCAGGAAAAGCTCTCATGTATTTTGGCTTGTTTCTAGCAACTGGGGTGTTCTTTGTTTTTATCGCATTTACCATGTTCCTTCCTGTCATGGTGTTGATGCCTCAGAAGTTTGCTATCTGCTTTACACTTGGGTGTGCTTTTATTATTGCATCATTCTTTGCACTCAAAGGCCCGAAGAATCAGCTTGCTCACATGTCTTCAAGAGAGAGACTTCCATTTACATTTGGATTTTTAGGCAGTATGGCGGGCACCATATATGTATCCATGGTGCTCCACAGCTACATTCTCTCTGTGCTCTTCTCTGTGATACAGGTTCTGGCACTTGCATACTATGCTGTTTCATACTTTCCCGGTGGATCTGCGGGTTTGAAGTTCCTATCTTCTGCTCTTACTTCTTCAGTCATGAGATGTTTTGGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031984 GO:0031985 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Got1

Protein Analysis

229

Amino Acids

24.44

Weight (kDa)

8.45

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26550 AT4G26550 AT5G56020 AT5G56020
fragaria_vesca	FvH4_3g42200 FvH4_3g42200
malus_domestica	MD03G1036800.v1.1 MD11G1038000.v1.1 MD17G1169900.v1.1
prunus_persica	Prupe.6G028800_v2.0.a1 Prupe.8G243900_v2.0.a1
pyrus_communis	pycom03g02820 pycom11g03200
rosa_chinensis	RchiOBHm_Chr5g0075471
rosa_laevigata	RLG00000036566
rosa_multiflora	Rmu_sc0000770.1_g000003 Rmu_sc0042482.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006030
rosa_rugosa	Rorug05G0439800
rosa_samantha	Rh5AG496900 Rh5BG518200 Rh5CG541700 Rh5DG531100
rosa_wichuraiana	Rw5G046090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	512
AccBSI	CCGCTC	1 cut(s)	36
AciI	CCGC	6 cut(s)	36, 42, 102, 161, 509, 626
AclWI	GGATC	1 cut(s)	628
AcuI	CTGAAG	2 cut(s)	249, 645
AfiI	CCNNNNNNNGG	1 cut(s)	189
AflIII	ACRYGT	1 cut(s)	456
AgsI	TTSAA	2 cut(s)	465, 634
AjnI	CCWGG	2 cut(s)	138, 229
AleI	CACNNNNGTG	1 cut(s)	394
AluBI	AGCT	4 cut(s)	126, 275, 448, 543
AluI	AGCT	4 cut(s)	126, 275, 448, 543
Alw21I	GWGCWC	3 cut(s)	128, 537, 561
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	1 cut(s)	628
AlwNI	CAGNNNCTG	1 cut(s)	580
AoxI	GGCC	2 cut(s)	136, 433
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	3 cut(s)	136, 163, 434
AsuC2I	CCSGG	1 cut(s)	615
AvaII	GGWCC	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	515
BanI	GGYRCC	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	128
BbsI	GAAGAC	2 cut(s)	63, 453
Bbv12I	GWGCWC	3 cut(s)	128, 537, 561
BccI	CCATC	1 cut(s)	4
BciT130I	CCWGG	2 cut(s)	140, 231
BciVI	GTATCC	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	2 cut(s)	252, 299
BfmI	CTRYAG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	535
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	2 cut(s)	43, 102
BlsI	GCNGC	2 cut(s)	44, 103
Bme1390I	CCNGG	3 cut(s)	140, 231, 615
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	3 cut(s)	136, 163, 434
BmiI	GGNNCC	2 cut(s)	236, 514
BmrFI	CCNGG	3 cut(s)	140, 231, 615
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	351, 422
BmuI	ACTGGG	1 cut(s)	315
BpiI	GAAGAC	2 cut(s)	63, 453
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpuMI	CCSGG	1 cut(s)	615
BsaJI	CCNNGG	4 cut(s)	132, 139, 230, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	2 cut(s)	140, 231
BseDI	CCNNGG	4 cut(s)	132, 139, 230, 528
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	1 cut(s)	310
BseRI	GAGGAG	1 cut(s)	118
BseSI	GKGCMC	1 cut(s)	515
BshFI	GGCC	2 cut(s)	138, 435
BshNI	GGYRCC	1 cut(s)	512
BsiHKAI	GWGCWC	3 cut(s)	128, 537, 561
BsiSI	CCGG	1 cut(s)	615
BslFI	GGGAC	2 cut(s)	205, 245
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	466
BsmFI	GGGAC	2 cut(s)	205, 245
BsnI	GGCC	2 cut(s)	138, 435
Bsp1286I	GDGCHC	4 cut(s)	128, 515, 537, 561
Bsp143I	GATC	3 cut(s)	148, 223, 620
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	6 cut(s)	36, 42, 102, 161, 509, 626
BspANI	GGCC	2 cut(s)	138, 435
BspCNI	CTCAG	1 cut(s)	379
BspHI	TCATGA	1 cut(s)	666
BspLI	GGNNCC	2 cut(s)	236, 514
BspPI	GGATC	1 cut(s)	628
BspQI	GCTCTTC	1 cut(s)	566
BspT107I	GGYRCC	1 cut(s)	512
BsrBI	CCGCTC	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	4 cut(s)	132, 139, 230, 528
BssMI	GATC	3 cut(s)	148, 223, 620
BssT1I	CCWWGG	2 cut(s)	132, 528
Bst2UI	CCWGG	2 cut(s)	140, 231
Bst4CI	ACNGT	2 cut(s)	184, 259
Bst6I	CTCTTC	1 cut(s)	566
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstC8I	GCNNGC	2 cut(s)	450, 511
BstDEI	CTNAG	1 cut(s)	366
BstDSI	CCRYGG	1 cut(s)	528
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	151, 226, 623
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	3 cut(s)	148, 223, 620
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 596
BstNI	CCWGG	2 cut(s)	140, 231
BstNSI	RCATGY	1 cut(s)	460
BstSCI	CCNGG	3 cut(s)	138, 229, 613
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	515
BstV2I	GAAGAC	2 cut(s)	63, 453
BstX2I	RGATCY	2 cut(s)	223, 620
BstYI	RGATCY	2 cut(s)	223, 620
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	138, 435
BtgI	CCRYGG	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	450, 511
CaiI	CAGNNNCTG	1 cut(s)	580
CciI	TCATGA	1 cut(s)	666
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	3 cut(s)	136, 163, 434
CpoI	CGGWCCG	1 cut(s)	163
CspI	CGGWCCG	1 cut(s)	163
CviAII	CATG	6 cut(s)	280, 337, 352, 457, 529, 667
CviJI	RGCY	9 cut(s)	83, 126, 138, 144, 275, 291, 435, 448, 543
CviKI_1	RGCY	9 cut(s)	83, 126, 138, 144, 275, 291, 435, 448, 543
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	3 cut(s)	150, 225, 622
DpnII	GATC	3 cut(s)	148, 223, 620
Eam1104I	CTCTTC	1 cut(s)	566
EarI	CTCTTC	1 cut(s)	566
Ecl136II	GAGCTC	1 cut(s)	126
Eco130I	CCWWGG	2 cut(s)	132, 528
Eco24I	GRGCYC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	126
Eco57I	CTGAAG	2 cut(s)	249, 645
EcoICRI	GAGCTC	1 cut(s)	126
EcoRII	CCWGG	2 cut(s)	138, 229
EcoT14I	CCWWGG	2 cut(s)	132, 528
EcoT38I	GRGCYC	1 cut(s)	128
ErhI	CCWWGG	2 cut(s)	132, 528
FaeI	CATG	6 cut(s)	283, 340, 355, 460, 532, 670
FaqI	GGGAC	2 cut(s)	205, 245
FatI	CATG	6 cut(s)	279, 336, 351, 456, 528, 666
FauI	CCCGC	2 cut(s)	502, 619
Fnu4HI	GCNGC	2 cut(s)	43, 102
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	2 cut(s)	43, 102
FspBI	CTAG	2 cut(s)	252, 299
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	2 cut(s)	43, 102
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	138, 435
HapII	CCGG	1 cut(s)	615
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	6 cut(s)	283, 340, 355, 460, 532, 670
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	3 cut(s)	53, 155, 442
HpaII	CCGG	1 cut(s)	615
Hpy188I	TCNGA	1 cut(s)	369
Hpy188III	TCNNGA	4 cut(s)	152, 267, 465, 667
HpyAV	CCTTC	2 cut(s)	273, 353
HpyCH4III	ACNGT	2 cut(s)	184, 259
HpyCH4V	TGCA	4 cut(s)	4, 413, 425, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 596
HpyF3I	CTNAG	1 cut(s)	366
Hsp92II	CATG	6 cut(s)	283, 340, 355, 460, 532, 670
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	148, 223, 620
LguI	GCTCTTC	1 cut(s)	566
LmnI	GCTCC	2 cut(s)	131, 540
LweI	GCATC	2 cut(s)	351, 422
MaeI	CTAG	2 cut(s)	252, 299
MalI	GATC	3 cut(s)	150, 225, 622
MbiI	CCGCTC	1 cut(s)	36
MboI	GATC	3 cut(s)	148, 223, 620
MboII	GAAGA	6 cut(s)	63, 451, 453, 553, 636, 651
MflI	RGATCY	2 cut(s)	223, 620
MhlI	GDGCHC	4 cut(s)	128, 515, 537, 561
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	5 cut(s)	76, 139, 248, 375, 675
MslI	CAYNNNNRTG	2 cut(s)	19, 394
MspI	CCGG	1 cut(s)	615
MspR9I	CCNGG	3 cut(s)	140, 231, 615
MvaI	CCWGG	2 cut(s)	140, 231
MwoI	GCNNNNNNNGC	2 cut(s)	42, 596
NciI	CCSGG	1 cut(s)	615
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	3 cut(s)	148, 223, 620
NlaIII	CATG	6 cut(s)	283, 340, 355, 460, 532, 670
NlaIV	GGNNCC	2 cut(s)	236, 514
NspI	RCATGY	1 cut(s)	460
OliI	CACNNNNGTG	1 cut(s)	394
PagI	TCATGA	1 cut(s)	666
PciI	ACATGT	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	566
PfeI	GAWTC	2 cut(s)	155, 442
PkrI	GCNGC	2 cut(s)	44, 103
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PscI	ACATGT	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	138, 229
PspGI	CCWGG	2 cut(s)	138, 229
PspN4I	GGNNCC	2 cut(s)	236, 514
PspPI	GGNCC	3 cut(s)	136, 163, 434
PstNI	CAGNNNCTG	1 cut(s)	580
PsuI	RGATCY	2 cut(s)	223, 620
RseI	CAYNNNNRTG	2 cut(s)	19, 394
Rsr2I	CGGWCCG	1 cut(s)	163
RsrII	CGGWCCG	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	566
SatI	GCNGC	2 cut(s)	43, 102
Sau3AI	GATC	3 cut(s)	148, 223, 620
Sau96I	GGNCC	3 cut(s)	136, 163, 434
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	3 cut(s)	140, 231, 615
SduI	GDGCHC	4 cut(s)	128, 515, 537, 561
SetI	ASST	9 cut(s)	68, 128, 232, 240, 277, 450, 545, 579, 686
SfaNI	GCATC	2 cut(s)	351, 422
SfcI	CTRYAG	1 cut(s)	114
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	2 cut(s)	19, 394
SsiI	CCGC	6 cut(s)	36, 42, 102, 161, 509, 626
SspMI	CTAG	2 cut(s)	252, 299
SstI	GAGCTC	1 cut(s)	128
StyD4I	CCNGG	3 cut(s)	138, 229, 613
StyI	CCWWGG	2 cut(s)	132, 528
TaaI	ACNGT	2 cut(s)	184, 259
TaqI	TCGA	2 cut(s)	147, 153
TauI	GCSGC	2 cut(s)	45, 104
TfiI	GAWTC	2 cut(s)	155, 442
TscAI	CASTG	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	594
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	163
XceI	RCATGY	1 cut(s)	460
XspI	CTAG	2 cut(s)	252, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.