Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000770.1

Orthogroup ID

OG0007812

Physical Location & Seq

Genomic Coordinates Forward (+)

9799 .. 11342

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000770.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgcagaaaatggcacaggaatggttctccggcggcagcaccggcgccggcggcgactctcagcagccggcgtcttctctcttagccgattggaactcctacgccgcttcccaatccgcagaggacagctcctcttcggccctcggcttcgatctcgaatccgcggtccgctccgcgaacgacaccgtttcgggcactttcagcgtggtttccaaaggagttagagatctacctgggaacctccagtctgccactagtagtgtcccttcaggaaaagctctcatgtattttggtttgtttctggcaactggggtgttctttgtttttattgcatttaccatgttccttccggttatggtattgatgccacagaagtttgctatctgctttacactcgggtgtgcctttattattggatccttctttgcacttaaaggtccaaagaatcagtttgttcacatgtcctcgaaagagagacttcctttcacacttggatttttaggcagtatggtatctaactttgtttctctcattcttcttcttagttctgttcttaggctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031984 GO:0031985 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Got1

Protein Analysis

187

Amino Acids

19.87

Weight (kDa)

7.77

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26550 AT4G26550 AT5G56020 AT5G56020
fragaria_vesca	FvH4_3g42200 FvH4_3g42200
malus_domestica	MD03G1036800.v1.1 MD11G1038000.v1.1 MD17G1169900.v1.1
prunus_persica	Prupe.6G028800_v2.0.a1 Prupe.8G243900_v2.0.a1
pyrus_communis	pycom03g02820 pycom11g03200
rosa_chinensis	RchiOBHm_Chr5g0075471
rosa_laevigata	RLG00000036566
rosa_multiflora	Rmu_sc0000770.1_g000003 Rmu_sc0042482.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006030
rosa_rugosa	Rorug05G0439800
rosa_samantha	Rh5AG496900 Rh5BG518200 Rh5CG541700 Rh5DG531100
rosa_wichuraiana	Rw5G046090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	171
AccII	CGCG	2 cut(s)	164, 176
AciI	CCGC	8 cut(s)	33, 51, 105, 117, 162, 164, 169, 174
AclWI	GGATC	2 cut(s)	411, 424
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	2 cut(s)	45, 71
AflIII	ACRYGT	1 cut(s)	459
AhlI	ACTAGT	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	232
AleI	CACNNNNGTG	1 cut(s)	397
AluBI	AGCT	2 cut(s)	129, 278
AluI	AGCT	2 cut(s)	129, 278
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	2 cut(s)	411, 424
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	36, 64
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	3 cut(s)	139, 166, 437
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	2 cut(s)	166, 437
BaeGI	GKGCMC	1 cut(s)	197
BamHI	GGATCC	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	44
BarI	GAAGNNNNNNTAC	2 cut(s)	250, 282
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	48, 76
BciT130I	CCWGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	469
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	48
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	5 cut(s)	34, 37, 52, 65, 105
BlsI	GCNGC	5 cut(s)	35, 38, 53, 66, 106
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	2 cut(s)	166, 437
BmeT110I	CYCGRG	1 cut(s)	395
BmgT120I	GGNCC	3 cut(s)	139, 166, 437
BmiI	GGNNCC	3 cut(s)	46, 239, 418
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BpmI	CTGGAG	1 cut(s)	227
BsaHI	GRCGYC	2 cut(s)	45, 71
BsaJI	CCNNGG	3 cut(s)	142, 162, 233
BsaWI	WCCGGW	1 cut(s)	349
Bse118I	RCCGGY	3 cut(s)	41, 47, 67
Bse1I	ACTGG	2 cut(s)	244, 313
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	142, 162, 233
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	2 cut(s)	244, 313
BseRI	GAGGAG	1 cut(s)	121
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	48, 76
Bsh1236I	CGCG	2 cut(s)	164, 176
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	5 cut(s)	30, 42, 48, 68, 350
BslFI	GGGAC	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	469
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	151, 226, 416
BspACI	CCGC	8 cut(s)	33, 51, 105, 117, 162, 164, 169, 174
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	2 cut(s)	164, 176
BspLI	GGNNCC	3 cut(s)	46, 239, 418
BspPI	GGATC	2 cut(s)	411, 424
BspT107I	GGYRCC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	171
BsrFI	RCCGGY	3 cut(s)	41, 47, 67
BsrI	ACTGG	2 cut(s)	244, 313
BssAI	RCCGGY	3 cut(s)	41, 47, 67
BssECI	CCNNGG	3 cut(s)	142, 162, 233
BssMI	GATC	3 cut(s)	151, 226, 416
BssNI	GRCGYC	2 cut(s)	45, 71
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	2 cut(s)	45, 71
BstC8I	GCNNGC	2 cut(s)	49, 69
BstDEI	CTNAG	4 cut(s)	60, 82, 542, 554
BstDSI	CCRYGG	1 cut(s)	162
BstFNI	CGCG	2 cut(s)	164, 176
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	154, 229, 419
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	3 cut(s)	151, 226, 416
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 51, 201
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	197
BstUI	CGCG	2 cut(s)	164, 176
BstV1I	GCAGC	2 cut(s)	48, 76
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	2 cut(s)	226, 416
BstYI	RGATCY	2 cut(s)	226, 416
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	49, 69
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	3 cut(s)	41, 47, 67
Cfr13I	GGNCC	3 cut(s)	139, 166, 437
Cfr42I	CCGCGG	1 cut(s)	165
CpoI	CGGWCCG	1 cut(s)	166
CseI	GACGC	1 cut(s)	60
CspI	CGGWCCG	1 cut(s)	166
CviAII	CATG	3 cut(s)	283, 340, 460
CviJI	RGCY	7 cut(s)	67, 86, 129, 140, 147, 278, 559
CviKI_1	RGCY	7 cut(s)	67, 86, 129, 140, 147, 278, 559
DdeI	CTNAG	4 cut(s)	60, 82, 542, 554
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	3 cut(s)	153, 228, 418
DpnII	GATC	3 cut(s)	151, 226, 416
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	166, 437
Eco57I	CTGAAG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	232
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
FaeI	CATG	3 cut(s)	286, 343, 463
FaiI	YATR	5 cut(s)	284, 341, 356, 461, 509
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	282, 339, 459
Fnu4HI	GCNGC	5 cut(s)	34, 37, 52, 65, 105
Fsp4HI	GCNGC	5 cut(s)	34, 37, 52, 65, 105
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	5 cut(s)	34, 37, 52, 65, 105
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	5 cut(s)	30, 42, 48, 68, 350
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	2 cut(s)	45, 71
Hin1II	CATG	3 cut(s)	286, 343, 463
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	3 cut(s)	56, 158, 445
HpaII	CCGG	5 cut(s)	30, 42, 48, 68, 350
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188III	TCNNGA	2 cut(s)	155, 270
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	3 cut(s)	276, 356, 430
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	3 cut(s)	4, 332, 428
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 51, 201
HpyF3I	CTNAG	4 cut(s)	60, 82, 542, 554
Hsp92I	GRCGYC	2 cut(s)	45, 71
Hsp92II	CATG	3 cut(s)	286, 343, 463
HspAI	GCGC	1 cut(s)	45
KasI	GGCGCC	1 cut(s)	44
KroI	GCCGGC	2 cut(s)	47, 67
KroNI	GCCGGC	2 cut(s)	49, 69
KspI	CCGCGG	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	151, 226, 416
LmnI	GCTCC	2 cut(s)	134, 176
Lsp1109I	GCAGC	2 cut(s)	48, 76
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	1 cut(s)	255
MalI	GATC	3 cut(s)	153, 228, 418
MbiI	CCGCTC	1 cut(s)	171
MboI	GATC	3 cut(s)	151, 226, 416
MboII	GAAGA	4 cut(s)	66, 126, 527, 530
MflI	RGATCY	2 cut(s)	226, 416
MhlI	GDGCHC	1 cut(s)	197
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	5 cut(s)	115, 142, 152, 251, 475
MreI	CGCCGGCG	1 cut(s)	47
MroNI	GCCGGC	2 cut(s)	47, 67
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	2 cut(s)	19, 397
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	5 cut(s)	30, 42, 48, 68, 350
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	2 cut(s)	164, 176
MwoI	GCNNNNNNNGC	3 cut(s)	42, 51, 201
NaeI	GCCGGC	2 cut(s)	49, 69
NarI	GGCGCC	1 cut(s)	45
NdeII	GATC	3 cut(s)	151, 226, 416
NgoMIV	GCCGGC	2 cut(s)	47, 67
NlaIII	CATG	3 cut(s)	286, 343, 463
NlaIV	GGNNCC	3 cut(s)	46, 239, 418
NmeAIII	GCCGAG	1 cut(s)	123
NspI	RCATGY	1 cut(s)	463
OliI	CACNNNNGTG	1 cut(s)	397
PciI	ACATGT	1 cut(s)	459
PdiI	GCCGGC	2 cut(s)	49, 69
PfeI	GAWTC	2 cut(s)	158, 445
PkrI	GCNGC	5 cut(s)	35, 38, 53, 66, 106
PleI	GAGTC	1 cut(s)	50
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	50
PscI	ACATGT	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	3 cut(s)	46, 239, 418
PspPI	GGNCC	3 cut(s)	139, 166, 437
PsuI	RGATCY	2 cut(s)	226, 416
RseI	CAYNNNNRTG	2 cut(s)	19, 397
Rsr2I	CGGWCCG	1 cut(s)	166
RsrII	CGGWCCG	1 cut(s)	166
SacII	CCGCGG	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	5 cut(s)	34, 37, 52, 65, 105
Sau3AI	GATC	3 cut(s)	151, 226, 416
Sau96I	GGNCC	3 cut(s)	139, 166, 437
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	5 cut(s)	131, 235, 243, 280, 439
SfaNI	GCATC	1 cut(s)	354
SfoI	GGCGCC	1 cut(s)	46
Sfr303I	CCGCGG	1 cut(s)	165
SgrAI	CRCCGGYG	2 cut(s)	41, 47
SgrBI	CCGCGG	1 cut(s)	165
SinI	GGWCC	2 cut(s)	166, 437
SmiMI	CAYNNNNRTG	2 cut(s)	19, 397
SpeI	ACTAGT	1 cut(s)	254
SsiI	CCGC	8 cut(s)	33, 51, 105, 117, 162, 164, 169, 174
SspDI	GGCGCC	1 cut(s)	44
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	3 cut(s)	150, 156, 467
TauI	GCSGC	3 cut(s)	36, 54, 107
TfiI	GAWTC	2 cut(s)	158, 445
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TseI	GCWGC	2 cut(s)	36, 64
VpaK11BI	GGWCC	2 cut(s)	166, 437
XceI	RCATGY	1 cut(s)	463
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.