Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042482.1

Orthogroup ID

OG0007812

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 826

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042482.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

gtcccttcaggaaaagctctcatgtattttggtttgtttctggcaactggggtgttctttgtttttattgcatttaccatgttccttccggttatggtattgatgccacagaagtttgctatctgctttacactcgggtgtgcctttattattggatccttctttgcacttaaaggtccaaagaatcagtttgttcacatgtcctcgaaagagagacttcctttcacacttggatttttaggcagtatggtgggtaccatatatgtctcgatggtgcttcacagctatattctctctgtgtttttctctgtattacaggttctggcgcttgcatactatgctgtttcatactttcctggtggatcagcgggtttgaagttcctatcttctgcccttacgtcttcagtaatgaaatgttttgggaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031984 GO:0031985 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Got1

Protein Analysis

142

Amino Acids

15.53

Weight (kDa)

9.72

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26550 AT4G26550 AT5G56020 AT5G56020
fragaria_vesca	FvH4_3g42200 FvH4_3g42200
malus_domestica	MD03G1036800.v1.1 MD11G1038000.v1.1 MD17G1169900.v1.1
prunus_persica	Prupe.6G028800_v2.0.a1 Prupe.8G243900_v2.0.a1
pyrus_communis	pycom03g02820 pycom11g03200
rosa_chinensis	RchiOBHm_Chr5g0075471
rosa_laevigata	RLG00000036566
rosa_multiflora	Rmu_sc0000770.1_g000003 Rmu_sc0042482.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006030
rosa_rugosa	Rorug05G0439800
rosa_samantha	Rh5AG496900 Rh5BG518200 Rh5CG541700 Rh5DG531100
rosa_wichuraiana	Rw5G046090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	254
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	3 cut(s)	150, 163, 370
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	256
AflIII	ACRYGT	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	376
AjnI	CCWGG	1 cut(s)	355
AleI	CACNNNNGTG	1 cut(s)	136
AluBI	AGCT	2 cut(s)	17, 285
AluI	AGCT	2 cut(s)	17, 285
Alw26I	GTCTC	2 cut(s)	208, 271
AlwI	GGATC	3 cut(s)	150, 163, 370
AlwNI	CAGNNNCTG	1 cut(s)	322
Ama87I	CYCGRG	1 cut(s)	134
Asp718I	GGTACC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	176
BamHI	GGATCC	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	393
BccI	CCATC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	357
BcoDI	GTCTC	2 cut(s)	208, 271
BfoI	RGCGCY	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	176
BmeT110I	CYCGRG	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	157, 256
BmrFI	CCNGG	1 cut(s)	357
BmrI	ACTGGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	393
BsaWI	WCCGGW	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	208, 271
BsoBI	CYCGRG	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	155, 362
BspACI	CCGC	1 cut(s)	368
BspLI	GGNNCC	2 cut(s)	157, 256
BspPI	GGATC	3 cut(s)	150, 163, 370
BspT107I	GGYRCC	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	52
BssMI	GATC	2 cut(s)	155, 362
Bst2UI	CCWGG	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	2 cut(s)	158, 365
BstMAI	GTCTC	2 cut(s)	208, 271
BstMBI	GATC	2 cut(s)	155, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	1 cut(s)	355
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	330
CaiI	CAGNNNCTG	1 cut(s)	322
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	3 cut(s)	22, 79, 199
CviJI	RGCY	2 cut(s)	17, 285
CviKI_1	RGCY	2 cut(s)	17, 285
CviQI	GTAC	1 cut(s)	255
DpnI	GATC	2 cut(s)	157, 364
DpnII	GATC	2 cut(s)	155, 362
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	355
FaeI	CATG	3 cut(s)	25, 82, 202
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	3 cut(s)	21, 78, 198
FauI	CCCGC	1 cut(s)	361
GlaI	GCGC	1 cut(s)	327
HaeII	RGCGCY	1 cut(s)	329
HapII	CCGG	1 cut(s)	89
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	3 cut(s)	25, 82, 202
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188III	TCNNGA	2 cut(s)	9, 268
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	15, 95, 169
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	3 cut(s)	71, 167, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	3 cut(s)	25, 82, 202
HspAI	GCGC	1 cut(s)	326
KpnI	GGTACC	1 cut(s)	258
Kzo9I	GATC	2 cut(s)	155, 362
LpnPI	CCDG	7 cut(s)	26, 33, 102, 302, 308, 342, 369
LweI	GCATC	1 cut(s)	93
MaeII	ACGT	1 cut(s)	398
MalI	GATC	2 cut(s)	157, 364
MboI	GATC	2 cut(s)	155, 362
MboII	GAAGA	2 cut(s)	378, 393
MflI	RGATCY	1 cut(s)	155
MnlI	CCTC	2 cut(s)	214, 417
MseI	TTAA	1 cut(s)	171
MslI	CAYNNNNRTG	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeII	GATC	2 cut(s)	155, 362
NlaIII	CATG	3 cut(s)	25, 82, 202
NlaIV	GGNNCC	2 cut(s)	157, 256
NspI	RCATGY	1 cut(s)	202
OliI	CACNNNNGTG	1 cut(s)	136
PciI	ACATGT	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	184
PscI	ACATGT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	157, 256
PspPI	GGNCC	1 cut(s)	176
PsrI	GAACNNNNNNTAC	2 cut(s)	303, 335
PstNI	CAGNNNCTG	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
RseI	CAYNNNNRTG	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	171
Sau3AI	GATC	2 cut(s)	155, 362
Sau96I	GGNCC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	357
SetI	ASST	6 cut(s)	19, 178, 287, 321, 401, 428
SfaNI	GCATC	1 cut(s)	93
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	136
SsiI	CCGC	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	355
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	2 cut(s)	206, 269
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TspDTI	ATGAA	2 cut(s)	336, 425
VpaK11BI	GGWCC	1 cut(s)	176
XceI	RCATGY	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.