Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007812

Physical Location & Seq

Genomic Coordinates Forward (+)

2480611 .. 2482773

Gene Structure 2163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g03200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCAGAAGATGGCGCAGGAATGGTTTTCGCAGACAGGCAGCGGCGTCGATGACTCGCAGAAATCGTCGTCGTCTTCCTTGTTAGCGGATTGGAACTCCTACGCCGCTTCACAATCTACGGACGAGAGCTCCTCTTTGGGACTTGGATTCGATCTCGAATCTGCGGTCCGTTCTGCTAACGATACCGTTTCCGGAACTTTCAGCGTGGTTTCCAAAGGAGTGAGAGATATACCTGGGAGCCTCCAGTCTGCTACTAGTAATGTCCCTTCAGGAAAAGCTCTCATGTATTTTGGCTTGTTTCTAGCAACGGGGATGTTCTTTGTTTTTATCGCATTTACCATGTTCCTTCCTGTCATGGTGTTGATGCCTCAGAAGTTTGCTATCTGCTTTACGCTTGGGTGTGCCTTTATTATCGCATCCTTCTTTGCACTCAAAGGTCCAAAGAATCAGCTTGCTCACATGTCTTCAAAAGAGAGACTTCCGTTTACTGTTGGATTTTTAGGCAGTATGGTGGGTACCATATATGTATCCATGGTGCTCCACAATTACATTCTATCTGTTGTCTTCTCTGTGTTACAGGTTCTGGCACTAGCTTACTATGCTGTTTCGTACTTTCCTGGTGGATCTGCGGGTTTGAAGTTCCTATCTTCTGCCCTTACATCTTCCGTAATGAGATGTTTTGGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031984 GO:0031985 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Got1

Protein Analysis

230

Amino Acids

24.55

Weight (kDa)

8.77

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26550 AT4G26550 AT5G56020 AT5G56020
fragaria_vesca	FvH4_3g42200 FvH4_3g42200
malus_domestica	MD03G1036800.v1.1 MD11G1038000.v1.1 MD17G1169900.v1.1
prunus_persica	Prupe.6G028800_v2.0.a1 Prupe.8G243900_v2.0.a1
pyrus_communis	pycom03g02820 pycom11g03200
rosa_chinensis	RchiOBHm_Chr5g0075471
rosa_laevigata	RLG00000036566
rosa_multiflora	Rmu_sc0000770.1_g000003 Rmu_sc0042482.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006030
rosa_rugosa	Rorug05G0439800
rosa_samantha	Rh5AG496900 Rh5BG518200 Rh5CG541700 Rh5DG531100
rosa_wichuraiana	Rw5G046090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	515
AccIII	TCCGGA	1 cut(s)	191
AciI	CCGC	5 cut(s)	42, 86, 105, 164, 629
AclWI	GGATC	1 cut(s)	631
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	517, 611
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	2 cut(s)	468, 637
AhlI	ACTAGT	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	232, 616
AluBI	AGCT	4 cut(s)	129, 278, 451, 593
AluI	AGCT	4 cut(s)	129, 278, 451, 593
Alw21I	GWGCWC	2 cut(s)	131, 540
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	631
AlwNI	CAGNNNCTG	1 cut(s)	583
Aor13HI	TCCGGA	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	39
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
Asp718I	GGTACC	1 cut(s)	515
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	2 cut(s)	166, 437
AvaII	GGWCC	2 cut(s)	166, 437
BanI	GGYRCC	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	131
BarI	GAAGNNNNNNTAC	2 cut(s)	250, 282
BbsI	GAAGAC	3 cut(s)	66, 456, 556
Bbv12I	GWGCWC	2 cut(s)	131, 540
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	1 cut(s)	4
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	2 cut(s)	234, 618
BciVI	GTATCC	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	469
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	3 cut(s)	255, 302, 590
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	3 cut(s)	40, 43, 105
BlsI	GCNGC	3 cut(s)	41, 44, 106
Bme1390I	CCNGG	2 cut(s)	234, 618
Bme18I	GGWCC	2 cut(s)	166, 437
BmgT120I	GGNCC	2 cut(s)	166, 437
BmiI	GGNNCC	2 cut(s)	239, 517
BmrFI	CCNGG	2 cut(s)	234, 618
BmsI	GCATC	2 cut(s)	354, 425
BpiI	GAAGAC	3 cut(s)	66, 456, 556
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	45
BsaJI	CCNNGG	2 cut(s)	233, 531
BsaWI	WCCGGW	1 cut(s)	191
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bse1I	ACTGG	1 cut(s)	244
BseAI	TCCGGA	1 cut(s)	191
BseBI	CCWGG	2 cut(s)	234, 618
BseDI	CCNNGG	2 cut(s)	233, 531
BseGI	GGATG	2 cut(s)	318, 416
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	515
BsiHKAI	GWGCWC	2 cut(s)	131, 540
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	153, 248
BsmAI	GTCTC	1 cut(s)	469
BsmFI	GGGAC	2 cut(s)	153, 248
Bsp1286I	GDGCHC	2 cut(s)	131, 540
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	151, 623
Bsp19I	CCATGG	1 cut(s)	531
BspACI	CCGC	5 cut(s)	42, 86, 105, 164, 629
BspCNI	CTCAG	1 cut(s)	382
BspEI	TCCGGA	1 cut(s)	191
BspLI	GGNNCC	2 cut(s)	239, 517
BspPI	GGATC	1 cut(s)	631
BspT107I	GGYRCC	1 cut(s)	515
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	233, 531
BssMI	GATC	2 cut(s)	151, 623
BssNI	GRCGYC	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	2 cut(s)	234, 618
Bst4CI	ACNGT	2 cut(s)	187, 490
BstACI	GRCGYC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	531
BstF5I	GGATG	2 cut(s)	318, 416
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	2 cut(s)	154, 626
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	2 cut(s)	151, 623
BstMWI	GCNNNNNNNGC	1 cut(s)	599
BstNI	CCWGG	2 cut(s)	234, 618
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	2 cut(s)	232, 616
BstV1I	GCAGC	1 cut(s)	51
BstV2I	GAAGAC	3 cut(s)	66, 456, 556
BstX2I	RGATCY	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	623
BsuI	GTATCC	1 cut(s)	538
BtgI	CCRYGG	1 cut(s)	531
BtsCI	GGATG	2 cut(s)	318, 416
Cac8I	GCNNGC	1 cut(s)	453
CaiI	CAGNNNCTG	1 cut(s)	583
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	2 cut(s)	166, 437
CpoI	CGGWCCG	1 cut(s)	166
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	516, 610
CspI	CGGWCCG	1 cut(s)	166
CviAII	CATG	5 cut(s)	283, 340, 355, 460, 532
CviJI	RGCY	6 cut(s)	129, 240, 278, 294, 451, 593
CviKI_1	RGCY	6 cut(s)	129, 240, 278, 294, 451, 593
CviQI	GTAC	2 cut(s)	516, 610
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	2 cut(s)	153, 625
DpnII	GATC	2 cut(s)	151, 623
Ecl136II	GAGCTC	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	531
Eco24I	GRGCYC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	166, 437
Eco53kI	GAGCTC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	129
EcoRII	CCWGG	2 cut(s)	232, 616
EcoT14I	CCWWGG	1 cut(s)	531
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	5 cut(s)	286, 343, 358, 463, 535
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FaqI	GGGAC	2 cut(s)	153, 248
FatI	CATG	5 cut(s)	282, 339, 354, 459, 531
FauI	CCCGC	1 cut(s)	622
Fnu4HI	GCNGC	3 cut(s)	40, 43, 105
FokI	GGATG	2 cut(s)	325, 403
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	3 cut(s)	40, 43, 105
FspBI	CTAG	3 cut(s)	255, 302, 590
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	3 cut(s)	40, 43, 105
GsuI	CTGGAG	1 cut(s)	227
HapII	CCGG	1 cut(s)	192
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	5 cut(s)	286, 343, 358, 463, 535
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	4 cut(s)	53, 147, 158, 445
HpaII	CCGG	1 cut(s)	192
Hpy166II	GTNNAC	1 cut(s)	486
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	3 cut(s)	155, 192, 270
Hpy8I	GTNNAC	1 cut(s)	486
Hpy99I	CGWCG	3 cut(s)	50, 70, 73
HpyAV	CCTTC	3 cut(s)	276, 356, 430
HpyCH4III	ACNGT	2 cut(s)	187, 490
HpyCH4V	TGCA	2 cut(s)	4, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	599
HpyF3I	CTNAG	1 cut(s)	369
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	5 cut(s)	286, 343, 358, 463, 535
HspAI	GCGC	1 cut(s)	14
Kpn2I	TCCGGA	1 cut(s)	191
KpnI	GGTACC	1 cut(s)	519
Kzo9I	GATC	2 cut(s)	151, 623
LmnI	GCTCC	3 cut(s)	134, 237, 543
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	2 cut(s)	354, 425
MaeI	CTAG	3 cut(s)	255, 302, 590
MaeIII	GTNAC	1 cut(s)	573
MalI	GATC	2 cut(s)	153, 625
MboI	GATC	2 cut(s)	151, 623
MboII	GAAGA	6 cut(s)	19, 66, 456, 556, 639, 654
MflI	RGATCY	1 cut(s)	623
MhlI	GDGCHC	2 cut(s)	131, 540
MluCI	AATT	1 cut(s)	544
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	4 cut(s)	142, 251, 378, 678
MroI	TCCGGA	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	42
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	234, 618
MvaI	CCWGG	2 cut(s)	234, 618
MwoI	GCNNNNNNNGC	1 cut(s)	599
NcoI	CCATGG	1 cut(s)	531
NdeII	GATC	2 cut(s)	151, 623
NlaIII	CATG	5 cut(s)	286, 343, 358, 463, 535
NlaIV	GGNNCC	2 cut(s)	239, 517
NspI	RCATGY	1 cut(s)	463
PciI	ACATGT	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PfeI	GAWTC	3 cut(s)	147, 158, 445
PkrI	GCNGC	3 cut(s)	41, 44, 106
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PscI	ACATGT	1 cut(s)	459
Psp124BI	GAGCTC	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	232, 616
PspGI	CCWGG	2 cut(s)	232, 616
PspN4I	GGNNCC	2 cut(s)	239, 517
PspPI	GGNCC	2 cut(s)	166, 437
PstNI	CAGNNNCTG	1 cut(s)	583
PsuI	RGATCY	1 cut(s)	623
RsaI	GTAC	2 cut(s)	517, 611
RsaNI	GTAC	2 cut(s)	516, 610
Rsr2I	CGGWCCG	1 cut(s)	166
RsrII	CGGWCCG	1 cut(s)	166
SacI	GAGCTC	1 cut(s)	131
SatI	GCNGC	3 cut(s)	40, 43, 105
Sau3AI	GATC	2 cut(s)	151, 623
Sau96I	GGNCC	2 cut(s)	166, 437
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	2 cut(s)	234, 618
SduI	GDGCHC	2 cut(s)	131, 540
SetI	ASST	8 cut(s)	131, 235, 280, 439, 453, 582, 595, 689
SfaNI	GCATC	2 cut(s)	354, 425
SinI	GGWCC	2 cut(s)	166, 437
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	1 cut(s)	544
SsiI	CCGC	5 cut(s)	42, 86, 105, 164, 629
SspMI	CTAG	3 cut(s)	255, 302, 590
SstI	GAGCTC	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	232, 616
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	2 cut(s)	187, 490
TaqI	TCGA	3 cut(s)	48, 150, 156
TasI	AATT	1 cut(s)	544
TauI	GCSGC	2 cut(s)	45, 107
TfiI	GAWTC	3 cut(s)	147, 158, 445
TseI	GCWGC	1 cut(s)	39
TspGWI	ACGGA	4 cut(s)	134, 158, 471, 655
VpaK11BI	GGWCC	2 cut(s)	166, 437
XceI	RCATGY	1 cut(s)	463
XspI	CTAG	3 cut(s)	255, 302, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.