Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007812

Physical Location & Seq

Genomic Coordinates Forward (+)

2205462 .. 2208092

Gene Structure 2631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g02820.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTCCAAAATGAAACTCTACAACTATCACCAAAAACACCTCCCTAGCCCAAGGAGAAGAAAAGCCCAAATAATAACCACCCAATTCCGGGAAACCACCACGCCGCCATTTTTCTGTCAATCAAAAACAAAAACAAAAAAAAACCGTTTCGACAAAGAAACTCGCAAACCAAAAAGAAACGTGCTTTCCTTTCCATTCTCCAATTTTAAATTCCCCGAAAGCACAAAGCCAGCGACTTTCCCGATTCCACGGCGAAGCTTCTTCCCGATGCAGAAGATGGCGCAGGAATGGTTTTCGCAGACCGGCAGCGGCGTCGACGACTCGCAGAAGCCGTCGTCGTCTTCTTTGCTGGCCGATTGGAACTCCTACGCCGCTTCACAATCCACTGACGAGAGCTCCTCTTTGGGACTCGGATTCGATCTCGAATCTGCGGTGCGCTCTGCTAACGACACCGTTTCCGGCACTTTCAGTGTGGTTTCAAAAGGAGTGAGAGATATACCTGGGAGCCTCCAGTCTGCTACTAGTAATGTCCCTTCAGGAAAAGCTCTCATGTATTTTGGCTTGTTTCTAGCCACTGGGGTGTTCTTTGTTTTTATCGCATTTACCATGTTCCTTCCTGTCATGGTGTTGATGCCTCAGAAGTTTGCTATCTGCTTTACACTTGGGTGTGCCTTTATTATCGCATCATTCTTTGCACTCAAGGGTCCAAAGAATCAGCTTGCTCACATGTCTTCAAAAGAGAGACTTCCGTTTACCGTTGGATTTTTAGGCAGTATGGTGGGTACCATATATGTATCCATGGTACTCCACAGTTACATCCTCTCTGTTTTCTTCTCTGTGTTACAGGTTCTGGCACTTGCATACTATGCTGTTTCATACTTTCCTGGTGGATCTGCGGGTTTGAAGTTCCTATCTTCTGCCCTTACATCTTCAGTAATGCGATGTTTTGGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031984 GO:0031985 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Got1

Protein Analysis

319

Amino Acids

35.29

Weight (kDa)

10.04

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26550 AT4G26550 AT5G56020 AT5G56020
fragaria_vesca	FvH4_3g42200 FvH4_3g42200
malus_domestica	MD03G1036800.v1.1 MD11G1038000.v1.1 MD17G1169900.v1.1
prunus_persica	Prupe.6G028800_v2.0.a1 Prupe.8G243900_v2.0.a1
pyrus_communis	pycom03g02820 pycom11g03200
rosa_chinensis	RchiOBHm_Chr5g0075471
rosa_laevigata	RLG00000036566
rosa_multiflora	Rmu_sc0000770.1_g000003 Rmu_sc0042482.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006030
rosa_rugosa	Rorug05G0439800
rosa_samantha	Rh5AG496900 Rh5BG518200 Rh5CG541700 Rh5DG531100
rosa_wichuraiana	Rw5G046090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	782
AccB1I	GGYRCC	1 cut(s)	782
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	5 cut(s)	104, 309, 372, 431, 896
AclWI	GGATC	1 cut(s)	898
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	2 cut(s)	519, 915
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	2 cut(s)	784, 804
AfiI	CCNNNNNNNGG	2 cut(s)	87, 88
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	3 cut(s)	480, 735, 904
AhlI	ACTAGT	1 cut(s)	521
AjnI	CCWGG	2 cut(s)	499, 883
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AleI	CACNNNNGTG	2 cut(s)	578, 664
AluBI	AGCT	4 cut(s)	258, 396, 545, 718
AluI	AGCT	4 cut(s)	258, 396, 545, 718
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	1 cut(s)	736
AlwI	GGATC	1 cut(s)	898
AlwNI	CAGNNNCTG	1 cut(s)	850
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	1 cut(s)	209
Asp718I	GGTACC	1 cut(s)	782
AspLEI	GCGC	2 cut(s)	283, 438
AspS9I	GGNCC	1 cut(s)	704
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	20
AvaII	GGWCC	1 cut(s)	704
BanI	GGYRCC	1 cut(s)	782
BanII	GRGCYC	1 cut(s)	398
BarI	GAAGNNNNNNTAC	2 cut(s)	517, 549
BbsI	GAAGAC	2 cut(s)	333, 723
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	2 cut(s)	266, 316
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	2 cut(s)	501, 885
BciVI	GTATCC	1 cut(s)	805
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	1 cut(s)	736
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	3 cut(s)	45, 522, 569
BfuI	GTATCC	1 cut(s)	805
BisI	GCNGC	4 cut(s)	104, 307, 310, 372
BlsI	GCNGC	4 cut(s)	105, 308, 311, 373
Bme1390I	CCNGG	3 cut(s)	89, 501, 885
Bme18I	GGWCC	1 cut(s)	704
BmgT120I	GGNCC	1 cut(s)	704
BmiI	GGNNCC	3 cut(s)	506, 705, 784
BmrFI	CCNGG	3 cut(s)	89, 501, 885
BmrI	ACTGGG	1 cut(s)	585
BmsI	GCATC	3 cut(s)	258, 621, 692
BmuI	ACTGGG	1 cut(s)	585
BpiI	GAAGAC	2 cut(s)	333, 723
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
BpmI	CTGGAG	1 cut(s)	494
BpuEI	CTTGAG	1 cut(s)	683
BpuMI	CCSGG	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	312
BsaJI	CCNNGG	4 cut(s)	50, 248, 500, 798
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 88
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	2 cut(s)	511, 580
BseBI	CCWGG	2 cut(s)	501, 885
BseDI	CCNNGG	4 cut(s)	50, 248, 500, 798
BseGI	GGATG	1 cut(s)	816
BseLI	CCNNNNNNNGG	2 cut(s)	87, 88
BseMII	CTCAG	1 cut(s)	650
BseNI	ACTGG	2 cut(s)	511, 580
BseRI	GAGGAG	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	318
BshFI	GGCC	1 cut(s)	353
BshNI	GGYRCC	1 cut(s)	782
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	3 cut(s)	88, 303, 459
BslFI	GGGAC	2 cut(s)	420, 515
BslI	CCNNNNNNNGG	2 cut(s)	87, 88
BsmAI	GTCTC	1 cut(s)	736
BsmFI	GGGAC	2 cut(s)	420, 515
BsnI	GGCC	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp143I	GATC	2 cut(s)	418, 890
Bsp19I	CCATGG	1 cut(s)	798
BspACI	CCGC	5 cut(s)	104, 309, 372, 431, 896
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	649
BspLI	GGNNCC	3 cut(s)	506, 705, 784
BspPI	GGATC	1 cut(s)	898
BspT107I	GGYRCC	1 cut(s)	782
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	511, 580
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	4 cut(s)	50, 248, 500, 798
BssMI	GATC	2 cut(s)	418, 890
BssNI	GRCGYC	1 cut(s)	312
BssT1I	CCWWGG	2 cut(s)	50, 798
Bst2UI	CCWGG	2 cut(s)	501, 885
Bst4CI	ACNGT	4 cut(s)	146, 454, 757, 812
BstACI	GRCGYC	1 cut(s)	312
BstAPI	GCANNNNNTGC	1 cut(s)	866
BstC8I	GCNNGC	3 cut(s)	231, 351, 720
BstDEI	CTNAG	1 cut(s)	636
BstDSI	CCRYGG	2 cut(s)	248, 798
BstF5I	GGATG	1 cut(s)	816
BstHHI	GCGC	2 cut(s)	283, 438
BstKTI	GATC	2 cut(s)	421, 893
BstMAI	GTCTC	1 cut(s)	736
BstMBI	GATC	2 cut(s)	418, 890
BstMWI	GCNNNNNNNGC	1 cut(s)	866
BstNI	CCWGG	2 cut(s)	501, 885
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	3 cut(s)	87, 499, 883
BstV1I	GCAGC	1 cut(s)	318
BstV2I	GAAGAC	2 cut(s)	333, 723
BstX2I	RGATCY	1 cut(s)	890
BstYI	RGATCY	1 cut(s)	890
BsuI	GTATCC	1 cut(s)	805
BsuRI	GGCC	1 cut(s)	353
BtgI	CCRYGG	2 cut(s)	248, 798
BtsCI	GGATG	1 cut(s)	816
BtsIMutI	CAGTG	3 cut(s)	384, 475, 573
Cac8I	GCNNGC	3 cut(s)	231, 351, 720
CaiI	CAGNNNCTG	1 cut(s)	850
CfoI	GCGC	2 cut(s)	283, 438
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	704
CseI	GACGC	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	783, 803
CviAII	CATG	5 cut(s)	550, 607, 622, 727, 799
CviQI	GTAC	2 cut(s)	783, 803
DdeI	CTNAG	1 cut(s)	636
DpnI	GATC	2 cut(s)	420, 892
DpnII	GATC	2 cut(s)	418, 890
DraI	TTTAAA	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	351
Ecl136II	GAGCTC	1 cut(s)	396
Eco130I	CCWWGG	2 cut(s)	50, 798
Eco24I	GRGCYC	1 cut(s)	398
Eco47I	GGWCC	1 cut(s)	704
Eco53kI	GAGCTC	1 cut(s)	396
Eco57I	CTGAAG	2 cut(s)	519, 915
EcoICRI	GAGCTC	1 cut(s)	396
EcoRII	CCWGG	2 cut(s)	499, 883
EcoT14I	CCWWGG	2 cut(s)	50, 798
EcoT38I	GRGCYC	1 cut(s)	398
ErhI	CCWWGG	2 cut(s)	50, 798
FaeI	CATG	5 cut(s)	553, 610, 625, 730, 802
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FaqI	GGGAC	2 cut(s)	420, 515
FatI	CATG	5 cut(s)	549, 606, 621, 726, 798
FauI	CCCGC	1 cut(s)	889
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	4 cut(s)	104, 307, 310, 372
FokI	GGATG	1 cut(s)	803
FriOI	GRGCYC	1 cut(s)	398
Fsp4HI	GCNGC	4 cut(s)	104, 307, 310, 372
FspBI	CTAG	3 cut(s)	45, 522, 569
GlaI	GCGC	2 cut(s)	282, 437
GluI	GCNGC	4 cut(s)	104, 307, 310, 372
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	3 cut(s)	88, 303, 459
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	2 cut(s)	283, 438
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	5 cut(s)	553, 610, 625, 730, 802
Hin6I	GCGC	2 cut(s)	281, 436
HinP1I	GCGC	2 cut(s)	281, 436
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	6 cut(s)	244, 320, 408, 414, 425, 712
HpaII	CCGG	3 cut(s)	88, 303, 459
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	2 cut(s)	316, 753
Hpy188I	TCNGA	2 cut(s)	413, 639
Hpy188III	TCNNGA	4 cut(s)	241, 265, 422, 537
Hpy8I	GTNNAC	2 cut(s)	316, 753
Hpy99I	CGWCG	4 cut(s)	317, 320, 337, 340
HpyAV	CCTTC	2 cut(s)	543, 623
HpyCH4III	ACNGT	4 cut(s)	146, 454, 757, 812
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	3 cut(s)	271, 695, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	866
HpyF3I	CTNAG	1 cut(s)	636
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	5 cut(s)	553, 610, 625, 730, 802
HspAI	GCGC	2 cut(s)	281, 436
KpnI	GGTACC	1 cut(s)	786
Kzo9I	GATC	2 cut(s)	418, 890
LmnI	GCTCC	2 cut(s)	401, 504
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	3 cut(s)	258, 621, 692
MaeI	CTAG	3 cut(s)	45, 522, 569
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	812, 840
MalI	GATC	2 cut(s)	420, 892
MboI	GATC	2 cut(s)	418, 890
MboII	GAAGA	8 cut(s)	69, 253, 286, 333, 723, 823, 906, 921
MflI	RGATCY	1 cut(s)	890
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	3 cut(s)	83, 202, 209
MlyI	GAGTC	2 cut(s)	314, 402
MmeI	TCCRAC	1 cut(s)	739
MnlI	CCTC	6 cut(s)	50, 409, 518, 645, 830, 945
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	2 cut(s)	578, 664
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	3 cut(s)	88, 303, 459
MspR9I	CCNGG	3 cut(s)	89, 501, 885
MvaI	CCWGG	2 cut(s)	501, 885
MwoI	GCNNNNNNNGC	1 cut(s)	866
NciI	CCSGG	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	798
NdeII	GATC	2 cut(s)	418, 890
NlaIII	CATG	5 cut(s)	553, 610, 625, 730, 802
NlaIV	GGNNCC	3 cut(s)	506, 705, 784
NspI	RCATGY	1 cut(s)	730
OliI	CACNNNNGTG	2 cut(s)	578, 664
PciI	ACATGT	1 cut(s)	726
PcsI	WCGNNNNNNNCGW	1 cut(s)	329
PfeI	GAWTC	4 cut(s)	244, 414, 425, 712
PfoI	TCCNGGA	1 cut(s)	87
PkrI	GCNGC	4 cut(s)	105, 308, 311, 373
PleI	GAGTC	2 cut(s)	314, 402
PpsI	GAGTC	2 cut(s)	314, 402
PscI	ACATGT	1 cut(s)	726
Psp124BI	GAGCTC	1 cut(s)	398
Psp6I	CCWGG	2 cut(s)	499, 883
PspGI	CCWGG	2 cut(s)	499, 883
PspN4I	GGNNCC	3 cut(s)	506, 705, 784
PspPI	GGNCC	1 cut(s)	704
PstNI	CAGNNNCTG	1 cut(s)	850
PsuI	RGATCY	1 cut(s)	890
RsaI	GTAC	2 cut(s)	784, 804
RsaNI	GTAC	2 cut(s)	783, 803
RseI	CAYNNNNRTG	2 cut(s)	578, 664
SacI	GAGCTC	1 cut(s)	398
SalI	GTCGAC	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	4 cut(s)	104, 307, 310, 372
Sau3AI	GATC	2 cut(s)	418, 890
Sau96I	GGNCC	1 cut(s)	704
SchI	GAGTC	2 cut(s)	314, 402
ScrFI	CCNGG	3 cut(s)	89, 501, 885
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	9 cut(s)	42, 183, 260, 398, 502, 547, 720, 849, 956
SfaNI	GCATC	3 cut(s)	258, 621, 692
SgrDI	CGTCGACG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	704
SmiMI	CAYNNNNRTG	2 cut(s)	578, 664
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
SpeI	ACTAGT	1 cut(s)	521
Sse9I	AATT	3 cut(s)	83, 202, 209
SsiI	CCGC	5 cut(s)	104, 309, 372, 431, 896
SspMI	CTAG	3 cut(s)	45, 522, 569
SstI	GAGCTC	1 cut(s)	398
StyD4I	CCNGG	3 cut(s)	87, 499, 883
StyI	CCWWGG	2 cut(s)	50, 798
TaaI	ACNGT	4 cut(s)	146, 454, 757, 812
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	4 cut(s)	150, 315, 417, 423
TasI	AATT	3 cut(s)	83, 202, 209
TauI	GCSGC	3 cut(s)	106, 312, 374
TfiI	GAWTC	4 cut(s)	244, 414, 425, 712
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	3 cut(s)	391, 475, 580
TseI	GCWGC	1 cut(s)	306
TspDTI	ATGAA	2 cut(s)	26, 864
TspGWI	ACGGA	1 cut(s)	738
TspRI	CASTG	3 cut(s)	391, 475, 580
VpaK11BI	GGWCC	1 cut(s)	704
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	730
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	3 cut(s)	45, 522, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.